Wall clock time and date at job start Thu Apr 9 2020 12:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46770 * 2 1 4 4 N 1.46504 * 109.46914 * 180.02562 * 3 2 1 5 5 C 1.37094 * 119.99908 * 270.99738 * 4 3 2 6 6 H 1.07998 * 120.00072 * 142.29160 * 5 4 3 7 7 C 1.38956 * 120.00245 * 322.28729 * 5 4 3 8 8 N 1.31408 * 119.99802 * 338.80941 * 7 5 4 9 9 Si 1.86797 * 119.99853 * 158.80589 * 7 5 4 10 10 H 1.48500 * 109.47239 * 60.00440 * 9 7 5 11 11 H 1.48503 * 109.47153 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47541 * 300.00318 * 9 7 5 13 13 C 1.34777 * 119.99975 * 90.99714 * 4 3 2 14 14 O 1.21292 * 120.00230 * 0.02562 * 13 4 3 15 15 C 1.50698 * 119.99866 * 179.97438 * 13 4 3 16 16 C 1.53787 * 113.61588 * 200.06698 * 15 13 4 17 17 C 1.53955 * 87.01904 * 89.23060 * 16 15 13 18 18 C 1.53006 * 113.53433 * 270.81263 * 17 16 15 19 19 C 1.52996 * 113.74195 * 139.94931 * 17 16 15 20 20 C 1.53773 * 87.11224 * 25.36351 * 17 16 15 21 21 H 1.08995 * 109.47080 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47059 * 299.99844 * 1 2 3 23 23 H 1.08993 * 109.47165 * 59.99984 * 1 2 3 24 24 H 1.08998 * 109.47291 * 240.00209 * 2 1 3 25 25 H 1.08997 * 109.47152 * 119.99512 * 2 1 3 26 26 H 1.09001 * 109.47868 * 60.00417 * 3 2 1 27 27 H 1.09001 * 109.47566 * 299.99889 * 3 2 1 28 28 H 0.97001 * 119.99909 * 179.97438 * 8 7 5 29 29 H 1.09001 * 112.85198 * 68.87032 * 15 13 4 30 30 H 1.09000 * 113.61686 * 203.74908 * 16 15 13 31 31 H 1.08998 * 113.60770 * 334.65294 * 16 15 13 32 32 H 1.09000 * 109.47058 * 163.18720 * 18 17 16 33 33 H 1.09000 * 109.47157 * 283.18054 * 18 17 16 34 34 H 1.09000 * 109.47401 * 43.18421 * 18 17 16 35 35 H 1.08998 * 109.47003 * 322.39815 * 19 17 16 36 36 H 1.08999 * 109.47494 * 82.39767 * 19 17 16 37 37 H 1.08999 * 109.47383 * 202.39809 * 19 17 16 38 38 H 1.09003 * 113.61766 * 220.08720 * 20 17 16 39 39 H 1.09004 * 113.61450 * 89.18632 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.4217 1.1862 6 1 5.1018 0.8480 1.2735 7 6 3.7144 2.1388 2.2769 8 7 2.8837 3.1402 2.0926 9 14 4.2545 1.6791 4.0050 10 1 5.7304 1.8027 4.1117 11 1 3.6089 2.5900 4.9841 12 1 3.8530 0.2787 4.2931 13 6 4.1784 1.4630 -1.1679 14 8 3.5715 1.4819 -2.2179 15 6 5.6854 1.4637 -1.1685 16 6 6.3007 1.9702 -2.4837 17 6 6.2494 3.3815 -1.8705 18 6 4.9357 4.1178 -2.1412 19 6 7.4823 4.2328 -2.1801 20 6 6.3012 2.7003 -0.4929 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 2.5507 3.6405 2.8540 29 1 6.1092 0.5208 -0.8229 30 1 7.3133 1.6075 -2.6603 31 1 5.6483 1.8446 -3.3478 32 1 4.8412 4.9572 -1.4523 33 1 4.9308 4.4871 -3.1667 34 1 4.0994 3.4337 -1.9973 35 1 8.3722 3.6037 -2.1616 36 1 7.3753 4.6818 -3.1676 37 1 7.5779 5.0195 -1.4318 38 1 5.6493 3.1631 0.2480 39 1 7.3139 2.5374 -0.1241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350684254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:01 Heat of formation + Delta-G solvation = -29.994029 kcal Electronic energy + Delta-G solvation = -18540.429087 eV Core-core repulsion = 15869.333102 eV Total energy + Delta-G solvation = -2671.095986 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.92586 -37.19058 -34.93688 -32.78380 -31.28194 -30.09883 -26.79421 -26.04711 -24.83301 -24.73544 -22.49558 -20.47965 -19.04491 -17.76145 -16.43852 -15.86287 -14.84111 -14.61681 -14.38414 -14.02252 -13.58369 -13.44136 -13.11360 -12.69491 -12.19562 -12.06708 -11.82108 -11.51954 -11.50243 -11.29992 -11.12808 -10.94981 -10.84423 -10.63539 -10.39364 -10.30310 -10.26969 -10.00437 -9.69707 -9.33471 -9.22486 -9.02107 -8.29897 -7.44006 -6.34714 -4.03313 3.12614 3.21218 3.23357 3.93823 4.13125 4.76382 5.00262 5.15060 5.31758 5.48341 5.65166 5.80491 5.84713 5.87947 6.00868 6.11874 6.15152 6.29624 6.30279 6.37684 6.41665 6.52643 6.55014 6.57915 6.60575 6.69755 6.72207 6.83726 6.95026 7.11006 7.14270 7.17477 7.31383 7.39056 7.52216 7.99577 8.41532 9.10954 9.57527 10.00778 10.66205 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.019283 B = 0.010741 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.713182 B = 2606.320102 C = 3541.189329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.112 3.888 4 N -0.436 5.436 5 C -0.332 4.332 6 H 0.087 0.913 7 C 0.046 3.954 8 N -0.857 5.857 9 Si 0.908 3.092 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.493 3.507 14 O -0.605 6.605 15 C -0.109 4.109 16 C -0.120 4.120 17 C -0.089 4.089 18 C -0.138 4.138 19 C -0.131 4.131 20 C -0.113 4.113 21 H 0.044 0.956 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.269 0.731 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 -0.828 -1.920 4.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.011 4.011 4 N -0.153 5.153 5 C -0.460 4.460 6 H 0.104 0.896 7 C -0.160 4.160 8 N -0.493 5.493 9 Si 0.734 3.266 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.282 3.718 14 O -0.492 6.492 15 C -0.130 4.130 16 C -0.158 4.158 17 C -0.089 4.089 18 C -0.195 4.195 19 C -0.188 4.188 20 C -0.151 4.151 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.094 -0.657 -2.279 3.898 hybrid contribution 0.347 -0.252 1.108 1.188 sum 3.441 -0.909 -1.171 3.746 Atomic orbital electron populations 1.21659 0.96687 1.00382 1.01350 1.21820 0.94584 0.99539 1.01218 1.21419 0.81835 0.94529 1.03331 1.43397 1.04491 1.62888 1.04542 1.19275 1.09887 1.29016 0.87808 0.89561 1.25299 0.97068 0.93656 1.00005 1.69926 1.31926 1.15782 1.31690 0.86306 0.79115 0.78670 0.82462 1.19720 1.21002 1.19925 1.19829 0.88524 0.79477 0.83924 1.90496 1.70124 1.56517 1.32043 1.21960 0.94166 0.99239 0.97661 1.22984 0.99628 0.95570 0.97603 1.21821 0.95356 0.94103 0.97574 1.21791 0.97509 1.00646 0.99545 1.21704 0.97001 0.99471 1.00630 1.22950 1.00162 0.95483 0.96481 0.93694 0.93010 0.93187 0.93154 0.92278 0.87925 0.92876 0.92089 0.90211 0.90950 0.90673 0.93368 0.93898 0.89495 0.93184 0.93365 0.93015 0.88698 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.91 37.16 0.37 -2.07 16 2 C -0.13 -2.75 6.26 -26.73 -0.17 -2.91 16 3 C 0.11 2.68 5.03 -4.04 -0.02 2.65 16 4 N -0.44 -10.78 2.52 -114.81 -0.29 -11.07 16 5 C -0.33 -8.16 6.83 -14.93 -0.10 -8.26 16 6 H 0.09 2.07 7.35 -52.49 -0.39 1.69 16 7 C 0.05 1.12 4.97 -17.47 -0.09 1.03 16 8 N -0.86 -22.02 11.45 55.50 0.64 -21.38 16 9 Si 0.91 19.14 29.60 -169.99 -5.03 14.11 16 10 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.49 11.91 5.23 -10.99 -0.06 11.85 16 14 O -0.60 -15.80 14.02 5.55 0.08 -15.72 16 15 C -0.11 -2.25 3.26 -90.96 -0.30 -2.55 16 16 C -0.12 -2.19 6.76 -25.82 -0.17 -2.37 16 17 C -0.09 -1.60 1.39 -153.61 -0.21 -1.82 16 18 C -0.14 -2.76 8.99 37.16 0.33 -2.42 16 19 C -0.13 -1.94 9.20 37.16 0.34 -1.60 16 20 C -0.11 -2.20 6.21 -25.92 -0.16 -2.36 16 21 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.10 2.58 5.52 -51.93 -0.29 2.29 16 27 H 0.05 1.32 7.39 -51.93 -0.38 0.93 16 28 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.08 1.57 8.10 -51.93 -0.42 1.14 16 30 H 0.07 1.13 7.98 -51.93 -0.41 0.71 16 31 H 0.07 1.49 7.31 -51.93 -0.38 1.11 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 2.05 4.18 -51.93 -0.22 1.83 16 35 H 0.05 0.67 7.96 -51.93 -0.41 0.26 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 2.16 6.69 -51.93 -0.35 1.81 16 39 H 0.07 1.21 8.10 -51.93 -0.42 0.78 16 LS Contribution 305.10 15.07 4.60 4.60 Total: -1.00 -26.90 305.10 -6.85 -33.75 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.61 Total: 6.53 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -0.24 Total: -10.82 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.35 Total: -32.45 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.08 Total: -15.72 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.90 -6.85 -33.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350684254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.757 kcal (2) G-P(sol) polarization free energy of solvation -26.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds