Wall clock time and date at job start Thu Apr 9 2020 12:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46800 * 2 1 4 4 N 1.46504 * 109.46817 * 179.97438 * 3 2 1 5 5 C 1.37097 * 120.00087 * 273.55848 * 4 3 2 6 6 H 1.07999 * 120.00292 * 147.91840 * 5 4 3 7 7 C 1.38954 * 119.99893 * 327.91720 * 5 4 3 8 8 N 1.31408 * 119.99945 * 335.79416 * 7 5 4 9 9 Si 1.86805 * 119.99682 * 155.79153 * 7 5 4 10 10 H 1.48500 * 109.47275 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46734 * 120.00391 * 9 7 5 12 12 H 1.48501 * 109.46911 * 240.00258 * 9 7 5 13 13 C 1.34770 * 119.99782 * 93.55757 * 4 3 2 14 14 O 1.21294 * 119.99919 * 179.97438 * 13 4 3 15 15 C 1.50703 * 120.00401 * 359.97438 * 13 4 3 16 16 H 1.09006 * 115.54701 * 64.35148 * 15 13 4 17 17 C 1.52998 * 117.49654 * 278.68738 * 15 13 4 18 18 C 1.53001 * 117.52009 * 210.05676 * 15 13 4 19 19 H 1.08997 * 117.49603 * 214.96913 * 18 15 13 20 20 C 1.52996 * 117.49774 * 359.97438 * 18 15 13 21 21 C 1.53001 * 109.47348 * 62.23702 * 20 18 15 22 22 C 1.53009 * 109.46990 * 182.23794 * 20 18 15 23 23 H 1.09001 * 109.47319 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47434 * 299.99658 * 1 2 3 25 25 H 1.08995 * 109.47653 * 59.99955 * 1 2 3 26 26 H 1.08999 * 109.47039 * 240.00427 * 2 1 3 27 27 H 1.09000 * 109.46954 * 120.00123 * 2 1 3 28 28 H 1.08999 * 109.46976 * 60.00388 * 3 2 1 29 29 H 1.08993 * 109.47112 * 299.99877 * 3 2 1 30 30 H 0.97001 * 119.99483 * 179.97438 * 8 7 5 31 31 H 1.08997 * 117.50129 * 359.97136 * 17 15 13 32 32 H 1.09000 * 117.49653 * 144.97511 * 17 15 13 33 33 H 1.09001 * 109.47094 * 302.23086 * 20 18 15 34 34 H 1.08995 * 109.46826 * 60.83617 * 21 20 18 35 35 H 1.09004 * 109.46924 * 180.84067 * 21 20 18 36 36 H 1.08998 * 109.46729 * 300.83665 * 21 20 18 37 37 H 1.08992 * 109.46765 * 55.84448 * 22 20 18 38 38 H 1.08996 * 109.46487 * 175.84997 * 22 20 18 39 39 H 1.08997 * 109.46642 * 295.84604 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.3691 1.1859 6 1 5.1462 0.8688 1.2269 7 6 3.6538 1.9382 2.3346 8 7 2.7850 2.9193 2.2378 9 14 4.1683 1.3085 4.0164 10 1 5.1513 0.2075 3.8534 11 1 4.7877 2.4140 4.7906 12 1 2.9750 0.8039 4.7422 13 6 4.1792 1.5148 -1.1640 14 8 5.3922 1.5153 -1.1635 15 6 3.4263 1.5950 -2.4670 16 1 2.8223 2.4917 -2.6065 17 6 2.8964 0.2872 -3.0583 18 6 4.0907 0.9910 -3.7058 19 1 3.9239 1.4902 -4.6603 20 6 5.4694 0.3520 -3.5272 21 6 5.3623 -0.8308 -2.5626 22 6 5.9829 -0.1397 -4.8821 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 2.4105 3.3163 3.0397 31 1 3.0927 -0.6312 -2.5052 32 1 1.9436 0.3234 -3.5866 33 1 6.1620 1.0897 -3.1222 34 1 4.6811 -1.5752 -2.9748 35 1 6.3472 -1.2768 -2.4239 36 1 4.9823 -0.4829 -1.6021 37 1 5.9893 0.6886 -5.5905 38 1 6.9949 -0.5280 -4.7678 39 1 5.3303 -0.9300 -5.2529 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355284614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:08 Heat of formation + Delta-G solvation = -34.564137 kcal Electronic energy + Delta-G solvation = -18414.508507 eV Core-core repulsion = 15743.214347 eV Total energy + Delta-G solvation = -2671.294161 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.15454 -38.38680 -36.83307 -34.49998 -33.81189 -32.89259 -28.03147 -27.90623 -26.59528 -24.37547 -24.28116 -22.40543 -20.62058 -19.63635 -18.71262 -17.86341 -17.02705 -16.31124 -16.05194 -15.75384 -15.31281 -15.07284 -14.72492 -14.14571 -13.86680 -13.58735 -13.29876 -13.27200 -13.10510 -12.86878 -12.59439 -12.56480 -12.28031 -12.07600 -12.02866 -11.94477 -11.73330 -11.62071 -11.44750 -11.05232 -10.95057 -10.60424 -9.99830 -9.36961 -8.29776 -5.98153 1.33427 1.39256 1.52546 2.08531 2.29926 2.85257 3.03710 3.23942 3.77538 3.97278 4.06207 4.19739 4.29479 4.37652 4.42929 4.47193 4.58902 4.65768 4.81777 4.84188 4.85274 4.90720 5.00574 5.05577 5.14788 5.17757 5.19169 5.28951 5.32549 5.41130 5.46706 5.50844 5.55668 5.70588 5.72955 6.24147 6.60893 7.25093 7.58097 8.19533 8.69682 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.025280 B = 0.008546 C = 0.007223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.343055 B = 3275.431936 C = 3875.425239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.100 3.900 4 N -0.453 5.453 5 C -0.336 4.336 6 H 0.061 0.939 7 C 0.003 3.997 8 N -0.886 5.886 9 Si 0.973 3.027 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.264 1.264 13 C 0.478 3.522 14 O -0.615 6.615 15 C -0.193 4.193 16 H 0.122 0.878 17 C -0.143 4.143 18 C -0.114 4.114 19 H 0.131 0.869 20 C -0.066 4.066 21 C -0.140 4.140 22 C -0.133 4.133 23 H 0.068 0.932 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.272 0.728 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.034 0.966 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.401 -6.097 -9.683 12.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C -0.023 4.023 4 N -0.171 5.171 5 C -0.464 4.464 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.524 5.524 9 Si 0.797 3.203 10 H -0.198 1.198 11 H -0.205 1.205 12 H -0.188 1.188 13 C 0.268 3.732 14 O -0.501 6.501 15 C -0.214 4.214 16 H 0.140 0.860 17 C -0.180 4.180 18 C -0.132 4.132 19 H 0.149 0.851 20 C -0.085 4.085 21 C -0.197 4.197 22 C -0.190 4.190 23 H 0.087 0.913 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.145 0.855 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.933 -5.971 -9.525 12.276 hybrid contribution 0.478 0.210 1.347 1.445 sum -4.454 -5.761 -8.178 10.950 Atomic orbital electron populations 1.21617 0.93532 1.02222 1.01993 1.21823 0.97116 0.96864 1.00921 1.21754 0.80199 0.97022 1.03340 1.43773 1.05995 1.63022 1.04268 1.19345 1.05443 1.35251 0.86378 0.92149 1.25941 0.97364 0.93929 1.02649 1.69966 1.31363 1.20385 1.30733 0.85207 0.78588 0.78392 0.78160 1.19817 1.20468 1.18844 1.20200 0.87337 0.80049 0.85570 1.90454 1.15888 1.56049 1.87754 1.22114 1.05727 1.00472 0.93061 0.86036 1.23254 0.98834 0.93921 1.01952 1.22539 0.93535 1.01770 0.95354 0.85116 1.20570 0.95206 0.96664 0.96027 1.21948 1.00612 0.97802 0.99373 1.21761 1.00640 1.01460 0.95145 0.91318 0.93594 0.91370 0.91931 0.94530 0.89301 0.91821 0.91812 0.89106 0.85461 0.92820 0.91734 0.94129 0.94733 0.91759 0.93038 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.91 71.98 0.71 -3.06 16 2 C -0.13 -4.69 6.25 30.59 0.19 -4.50 16 3 C 0.10 4.40 4.92 86.38 0.42 4.83 16 4 N -0.45 -23.54 2.56 -635.53 -1.63 -25.17 16 5 C -0.34 -19.46 8.99 84.04 0.76 -18.70 16 6 H 0.06 3.78 7.68 -2.91 -0.02 3.76 16 7 C 0.00 0.18 4.97 84.93 0.42 0.60 16 8 N -0.89 -48.51 11.22 21.66 0.24 -48.26 16 9 Si 0.97 43.27 29.62 68.60 2.03 45.30 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 C 0.48 23.83 5.46 87.66 0.48 24.31 16 14 O -0.61 -34.96 12.63 -3.07 -0.04 -35.00 16 15 C -0.19 -7.15 4.43 -11.54 -0.05 -7.20 16 16 H 0.12 4.20 7.79 -2.38 -0.02 4.18 16 17 C -0.14 -4.09 8.20 30.59 0.25 -3.83 16 18 C -0.11 -3.47 5.71 -10.79 -0.06 -3.53 16 19 H 0.13 3.18 8.10 -2.39 -0.02 3.16 16 20 C -0.07 -2.23 2.44 -10.79 -0.03 -2.26 16 21 C -0.14 -5.07 7.29 71.98 0.52 -4.54 16 22 C -0.13 -3.27 9.17 71.99 0.66 -2.61 16 23 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.06 2.13 5.86 -2.39 -0.01 2.12 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 4.40 5.23 -2.39 -0.01 4.39 16 29 H 0.06 2.52 6.52 -2.39 -0.02 2.50 16 30 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 31 H 0.09 2.83 4.88 -2.39 -0.01 2.82 16 32 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.05 2.26 6.63 -2.39 -0.02 2.24 16 34 H 0.06 1.95 7.15 -2.39 -0.02 1.93 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.03 1.53 4.57 -2.39 -0.01 1.52 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -67.10 301.08 5.91 -61.19 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 1.02 Total: 22.45 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 4.28 Total: -20.51 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.38 Total: -73.43 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.04 Total: -35.00 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -67.10 5.91 -61.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355284614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.629 kcal (2) G-P(sol) polarization free energy of solvation -67.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds