Wall clock time and date at job start Thu Apr 9 2020 12:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47288 * 2 1 4 4 H 1.08999 * 109.46886 * 55.00262 * 3 2 1 5 5 C 1.52992 * 109.47400 * 295.00303 * 3 2 1 6 6 C 1.53000 * 109.47046 * 174.99846 * 3 2 1 7 7 H 1.08999 * 109.46939 * 60.00448 * 6 3 2 8 8 C 1.53001 * 109.46828 * 180.02562 * 6 3 2 9 9 C 1.50701 * 109.47338 * 300.00414 * 6 3 2 10 10 O 1.21285 * 120.00248 * 0.02562 * 9 6 3 11 11 N 1.34778 * 119.99524 * 179.97438 * 9 6 3 12 12 C 1.37105 * 119.99483 * 179.97438 * 11 9 6 13 13 H 1.08001 * 119.99436 * 131.65221 * 12 11 9 14 14 C 1.38946 * 120.00069 * 311.64867 * 12 11 9 15 15 N 1.31411 * 120.00192 * 167.45847 * 14 12 11 16 16 Si 1.86802 * 120.00209 * 347.45613 * 14 12 11 17 17 H 1.48500 * 109.46985 * 94.74218 * 16 14 12 18 18 H 1.48493 * 109.47321 * 214.74243 * 16 14 12 19 19 H 1.48506 * 109.47072 * 334.74334 * 16 14 12 20 20 C 1.46492 * 120.00348 * 0.02562 * 11 9 6 21 21 C 1.53010 * 117.49954 * 187.94383 * 20 11 9 22 22 C 1.53005 * 117.49990 * 119.28168 * 20 11 9 23 23 H 1.08999 * 109.47401 * 59.99866 * 1 2 3 24 24 H 1.08999 * 109.47545 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47461 * 299.99727 * 1 2 3 26 26 H 1.09007 * 109.47028 * 240.00572 * 2 1 3 27 27 H 1.09003 * 109.47163 * 120.00596 * 2 1 3 28 28 H 1.09004 * 109.47352 * 59.99874 * 5 3 2 29 29 H 1.08999 * 109.47246 * 179.97438 * 5 3 2 30 30 H 1.08999 * 109.47068 * 299.99848 * 5 3 2 31 31 H 1.08999 * 109.47259 * 60.00320 * 8 6 3 32 32 H 1.09004 * 109.46754 * 180.02562 * 8 6 3 33 33 H 1.09002 * 109.47224 * 299.99748 * 8 6 3 34 34 H 0.96993 * 120.00686 * 179.97438 * 15 14 12 35 35 H 1.08995 * 115.55235 * 333.60868 * 20 11 9 36 36 H 1.08996 * 117.49180 * 359.97438 * 21 20 11 37 37 H 1.08998 * 117.49927 * 145.02156 * 21 20 11 38 38 H 1.08996 * 117.49770 * 214.97769 * 22 20 11 39 39 H 1.08991 * 117.49724 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3072 6 6 3.5648 1.4443 0.1258 7 1 3.9994 0.9053 -0.7161 8 6 4.0747 2.8868 0.1264 9 6 3.9635 0.7704 1.4134 10 8 3.1119 0.3315 2.1572 11 7 5.2664 0.6546 1.7380 12 6 5.6291 0.0421 2.9097 13 1 6.3985 -0.7158 2.9071 14 6 5.0069 0.3963 4.1005 15 7 5.1677 -0.3467 5.1723 16 14 3.9416 1.9289 4.1778 17 1 2.5218 1.5568 3.9523 18 1 4.0813 2.5620 5.5137 19 1 4.3750 2.8864 3.1286 20 6 6.2950 1.1843 0.8394 21 6 7.7542 0.8607 1.1672 22 6 7.2160 2.2771 1.3860 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.5488 2.1253 -1.3968 29 1 1.9982 3.1544 -1.3070 30 1 2.0698 1.5876 -2.1491 31 1 3.6401 3.4254 0.9685 32 1 5.1611 2.8880 0.2155 33 1 3.7864 3.3745 -0.8048 34 1 4.7336 -0.0992 6.0037 35 1 6.0163 1.2409 -0.2128 36 1 7.9486 0.2541 2.0516 37 1 8.4353 0.7049 0.3306 38 1 7.5434 3.0523 0.6933 39 1 7.0562 2.6021 2.4140 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355490039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:21 Heat of formation + Delta-G solvation = -11.036109 kcal Electronic energy + Delta-G solvation = -18707.953445 eV Core-core repulsion = 16037.679536 eV Total energy + Delta-G solvation = -2670.273909 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.65672 -36.98590 -35.73563 -32.84382 -32.24568 -31.06225 -28.37759 -25.57192 -24.80968 -22.45903 -21.87574 -20.94057 -19.99985 -18.81488 -16.82782 -16.35353 -15.37159 -14.72250 -14.68137 -14.09449 -13.77845 -13.34608 -13.10596 -13.01795 -12.55362 -12.31102 -12.13921 -11.85270 -11.52648 -11.40787 -11.32957 -11.16245 -10.89995 -10.59303 -10.29831 -10.25020 -10.09312 -9.98475 -9.91893 -9.86120 -9.53973 -8.60721 -8.27283 -7.35016 -6.16039 -4.01069 3.31648 3.46434 3.63688 3.80255 4.38020 4.49736 4.66659 5.06721 5.11177 5.24069 5.33950 5.47473 5.55584 5.61009 5.68316 5.73806 5.79011 5.79884 5.84741 5.90797 6.00646 6.11217 6.19223 6.26006 6.29000 6.32709 6.36250 6.42072 6.55479 6.65155 6.72261 6.85543 6.89895 7.09878 7.87703 8.07794 8.80868 8.97110 9.44333 9.86226 10.89049 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.011447 C = 0.009028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.198960 B = 2445.544115 C = 3100.836503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C -0.069 4.069 4 H 0.070 0.930 5 C -0.148 4.148 6 C -0.104 4.104 7 H 0.083 0.917 8 C -0.157 4.157 9 C 0.468 3.532 10 O -0.537 6.537 11 N -0.441 5.441 12 C -0.341 4.341 13 H 0.093 0.907 14 C 0.090 3.910 15 N -0.874 5.874 16 Si 0.907 3.093 17 H -0.259 1.259 18 H -0.310 1.310 19 H -0.274 1.274 20 C 0.067 3.933 21 C -0.177 4.177 22 C -0.199 4.199 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.271 0.729 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.942 5.983 -12.320 13.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C -0.088 4.088 4 H 0.089 0.911 5 C -0.205 4.205 6 C -0.126 4.126 7 H 0.101 0.899 8 C -0.214 4.214 9 C 0.258 3.742 10 O -0.419 6.419 11 N -0.162 5.162 12 C -0.467 4.467 13 H 0.111 0.889 14 C -0.118 4.118 15 N -0.509 5.509 16 Si 0.737 3.263 17 H -0.184 1.184 18 H -0.240 1.240 19 H -0.199 1.199 20 C -0.038 4.038 21 C -0.215 4.215 22 C -0.238 4.238 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.411 5.687 -11.741 13.266 hybrid contribution -0.354 0.799 0.154 0.887 sum -2.765 6.486 -11.587 13.563 Atomic orbital electron populations 1.21754 0.96850 1.00782 1.00909 1.21841 0.95090 0.96526 1.03578 1.20888 0.93377 0.97034 0.97507 0.91138 1.21951 1.00931 1.00209 0.97408 1.21291 0.96812 0.97008 0.97450 0.89873 1.22110 1.02668 0.95053 1.01586 1.20367 0.83387 0.82674 0.87747 1.90456 1.48773 1.50565 1.52091 1.43159 1.02574 1.51380 1.19087 1.18725 1.25345 1.20123 0.82485 0.88925 1.25352 0.95155 0.96820 0.94513 1.69696 1.42536 1.37023 1.01646 0.86374 0.82982 0.81502 0.75402 1.18408 1.23994 1.19883 1.21865 0.87194 1.00827 0.93955 1.23176 0.95612 0.98927 1.03753 1.23275 1.05755 0.91913 1.02861 0.93543 0.93431 0.93045 0.93357 0.88240 0.92752 0.92796 0.93023 0.92743 0.90810 0.92329 0.91909 0.87063 0.87228 0.89623 0.89659 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.67 37.15 0.36 -1.78 16 2 C -0.13 -2.28 5.14 -26.74 -0.14 -2.42 16 3 C -0.07 -1.15 1.61 -90.62 -0.15 -1.30 16 4 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 5 C -0.15 -1.89 8.60 37.15 0.32 -1.57 16 6 C -0.10 -1.85 1.53 -91.77 -0.14 -1.99 16 7 H 0.08 1.33 7.57 -51.93 -0.39 0.93 16 8 C -0.16 -2.49 8.46 37.16 0.31 -2.17 16 9 C 0.47 10.91 4.87 -10.98 -0.05 10.85 16 10 O -0.54 -14.44 9.61 5.55 0.05 -14.39 16 11 N -0.44 -10.47 2.43 -107.73 -0.26 -10.73 16 12 C -0.34 -9.51 8.45 -14.93 -0.13 -9.64 16 13 H 0.09 2.73 7.18 -52.49 -0.38 2.35 16 14 C 0.09 2.64 5.02 -17.47 -0.09 2.56 16 15 N -0.87 -26.86 13.96 55.50 0.77 -26.08 16 16 Si 0.91 24.35 24.67 -169.99 -4.19 20.15 16 17 H -0.26 -7.29 6.50 56.52 0.37 -6.93 16 18 H -0.31 -8.26 7.11 56.52 0.40 -7.86 16 19 H -0.27 -6.96 6.87 56.52 0.39 -6.57 16 20 C 0.07 1.26 4.31 -67.93 -0.29 0.96 16 21 C -0.18 -3.06 9.84 -26.68 -0.26 -3.33 16 22 C -0.20 -3.43 9.41 -26.68 -0.25 -3.68 16 23 H 0.05 0.58 6.57 -51.93 -0.34 0.24 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.10 2.11 5.41 -51.93 -0.28 1.83 16 28 H 0.05 0.64 6.57 -51.93 -0.34 0.30 16 29 H 0.05 0.64 6.43 -51.93 -0.33 0.30 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.96 7.93 -51.93 -0.41 0.54 16 32 H 0.07 1.15 4.38 -51.93 -0.23 0.92 16 33 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 34 H 0.27 7.89 8.31 -40.82 -0.34 7.55 16 35 H 0.11 1.75 6.22 -51.93 -0.32 1.43 16 36 H 0.11 2.19 6.60 -51.93 -0.34 1.84 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 LS Contribution 292.74 15.07 4.41 4.41 Total: -1.00 -31.79 292.74 -5.99 -37.78 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.27 Total: 2.36 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.50 Total: -13.50 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.51 Total: -36.81 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.05 Total: -14.39 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -4.19 Total: 20.15 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.79 -5.99 -37.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355490039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.744 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds