Wall clock time and date at job start Thu Apr 9 2020 12:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46881 * 2 1 4 4 H 1.08997 * 109.46662 * 304.99189 * 3 2 1 5 5 C 1.50705 * 109.46565 * 184.99683 * 3 2 1 6 6 H 1.07997 * 119.99946 * 239.99597 * 5 3 2 7 7 C 1.37880 * 119.99802 * 60.00198 * 5 3 2 8 8 N 1.31519 * 120.00227 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99804 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47059 * 59.99709 * 9 7 5 11 11 H 1.48496 * 109.46825 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46923 * 299.99889 * 9 7 5 13 13 N 1.46496 * 109.47378 * 65.00200 * 3 2 1 14 14 C 1.34774 * 119.99544 * 274.99692 * 13 3 2 15 15 O 1.21279 * 120.00472 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00020 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46925 * 300.00031 * 16 14 13 18 18 C 1.52997 * 109.47103 * 59.99861 * 16 14 13 19 19 C 1.52997 * 109.47238 * 180.02562 * 16 14 13 20 20 C 1.52998 * 117.49757 * 248.74658 * 19 16 14 21 21 C 1.53003 * 117.49978 * 180.08472 * 19 16 14 22 22 H 1.09002 * 109.46908 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47271 * 300.00478 * 1 2 3 24 24 H 1.08995 * 109.46871 * 60.00368 * 1 2 3 25 25 H 1.08991 * 109.47312 * 239.99492 * 2 1 3 26 26 H 1.09004 * 109.46781 * 119.99920 * 2 1 3 27 27 H 0.97000 * 119.99779 * 180.02562 * 8 7 5 28 28 H 0.96994 * 120.00700 * 94.99812 * 13 3 2 29 29 H 1.09004 * 109.47059 * 59.99503 * 17 16 14 30 30 H 1.08992 * 109.47060 * 179.97438 * 17 16 14 31 31 H 1.09004 * 109.46930 * 299.99901 * 17 16 14 32 32 H 1.08992 * 109.47280 * 59.99899 * 18 16 14 33 33 H 1.09002 * 109.46777 * 180.02562 * 18 16 14 34 34 H 1.09000 * 109.47140 * 300.00046 * 18 16 14 35 35 H 1.09001 * 115.55272 * 34.41359 * 19 16 14 36 36 H 1.09004 * 117.50171 * 359.97438 * 20 19 16 37 37 H 1.09001 * 117.50114 * 145.02267 * 20 19 16 38 38 H 1.08997 * 117.49922 * 214.97679 * 21 19 16 39 39 H 1.08998 * 117.49430 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3365 -2.1729 9 14 6.0050 0.8811 -1.3817 10 1 6.5974 0.1472 -0.2347 11 1 6.3978 0.2165 -2.6502 12 1 6.4995 2.2813 -1.3820 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3668 15 8 -0.3396 2.6319 0.4343 16 6 0.0366 3.3388 2.6543 17 6 0.0806 2.3225 3.7972 18 6 1.0071 4.4834 2.9522 19 6 -1.3827 3.8944 2.5210 20 6 -1.5461 5.4153 2.4923 21 6 -1.9728 4.6225 3.7303 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8294 -0.0619 -2.9494 28 1 2.2718 2.1233 1.9977 29 1 1.0916 1.9262 3.8923 30 1 -0.2072 2.8102 4.7284 31 1 -0.6108 1.5069 3.5850 32 1 0.9758 5.2074 2.1380 33 1 0.7191 4.9709 3.8836 34 1 2.0180 4.0872 3.0473 35 1 -2.0632 3.3035 1.9080 36 1 -0.6425 6.0202 2.5689 37 1 -2.3344 5.8251 1.8608 38 1 -3.0416 4.5110 3.9126 39 1 -1.3501 4.7053 4.6210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356049269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:27 Heat of formation + Delta-G solvation = -31.755475 kcal Electronic energy + Delta-G solvation = -18132.693650 eV Core-core repulsion = 15461.521282 eV Total energy + Delta-G solvation = -2671.172368 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.86300 -37.40791 -34.89730 -33.23936 -32.00542 -30.53421 -27.32902 -26.88806 -24.24779 -23.04610 -22.13181 -21.11083 -19.40112 -18.41589 -17.06656 -15.97904 -15.62913 -14.97042 -14.58827 -14.23669 -14.12277 -13.42065 -12.82616 -12.63726 -12.56326 -12.21149 -11.91462 -11.75281 -11.49407 -11.32410 -11.21311 -10.99778 -10.93667 -10.79241 -10.56858 -10.29352 -10.26694 -10.05608 -9.81766 -9.58703 -9.01805 -8.73975 -8.45833 -7.73634 -6.09803 -4.19155 3.26347 3.31791 3.32765 3.50927 3.89251 4.19450 4.40966 4.73274 5.03012 5.11801 5.17874 5.21364 5.30585 5.46311 5.65053 5.67790 5.72233 5.87037 5.94564 6.04074 6.08249 6.20742 6.33353 6.35739 6.42529 6.49183 6.52275 6.70408 7.08091 7.24098 7.41538 7.53510 7.65400 7.78401 7.94634 8.22054 8.75114 8.82421 9.23483 9.48863 10.95426 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.034960 B = 0.006482 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.713368 B = 4318.847812 C = 4659.027176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.707 5.707 14 C 0.513 3.487 15 O -0.547 6.547 16 C -0.056 4.056 17 C -0.135 4.135 18 C -0.141 4.141 19 C -0.121 4.121 20 C -0.183 4.183 21 C -0.183 4.183 22 H 0.021 0.979 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.098 0.902 26 H 0.030 0.970 27 H 0.264 0.736 28 H 0.386 0.614 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.566 5.582 11.503 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.298 3.702 15 O -0.426 6.426 16 C -0.060 4.060 17 C -0.192 4.192 18 C -0.199 4.199 19 C -0.139 4.139 20 C -0.219 4.219 21 C -0.220 4.220 22 H 0.040 0.960 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.116 0.884 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.218 0.782 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.132 0.868 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.080 5.439 10.611 13.384 hybrid contribution 1.298 -0.052 0.208 1.315 sum -4.782 5.387 10.819 12.997 Atomic orbital electron populations 1.21838 0.98403 0.97915 1.01262 1.21926 0.92580 0.99913 1.02154 1.18748 0.94039 0.89131 0.81210 0.93435 1.21206 0.90823 1.38954 1.06208 0.92242 1.24884 0.98500 0.94857 0.95411 1.69890 1.35160 1.37599 1.09361 0.86534 0.85008 0.78276 0.77429 1.20199 1.21148 1.20223 1.46457 1.14701 1.56009 1.18292 1.20105 0.82640 0.78938 0.88546 1.90639 1.51523 1.59914 1.40511 1.20298 0.94560 0.96232 0.94872 1.21789 1.02365 0.98319 0.96743 1.21952 0.98596 0.97658 1.01672 1.22043 0.96359 0.94544 1.00995 1.23101 1.03301 0.94659 1.00881 1.22959 1.00783 1.05611 0.92647 0.95980 0.94209 0.93214 0.88397 0.95135 0.92552 0.78158 0.92054 0.92043 0.92166 0.91785 0.92079 0.91910 0.86838 0.88364 0.89214 0.89186 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.67 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.85 11.29 55.43 0.63 -24.22 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.71 -14.62 4.81 -54.93 -0.26 -14.88 16 14 C 0.51 10.13 5.05 -10.98 -0.06 10.08 16 15 O -0.55 -12.81 12.78 5.56 0.07 -12.74 16 16 C -0.06 -0.83 0.72 -155.66 -0.11 -0.94 16 17 C -0.13 -1.70 8.21 37.16 0.31 -1.40 16 18 C -0.14 -1.81 6.97 37.16 0.26 -1.55 16 19 C -0.12 -1.72 4.75 -90.62 -0.43 -2.15 16 20 C -0.18 -2.25 9.57 -26.69 -0.26 -2.51 16 21 C -0.18 -2.02 9.39 -26.69 -0.25 -2.27 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 24 H 0.05 1.20 7.85 -51.93 -0.41 0.80 16 25 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.39 7.05 7.37 -40.82 -0.30 6.75 16 29 H 0.06 0.75 7.56 -51.93 -0.39 0.35 16 30 H 0.06 0.64 7.29 -51.93 -0.38 0.26 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.88 6.97 -51.93 -0.36 0.51 16 33 H 0.06 0.64 7.08 -51.93 -0.37 0.27 16 34 H 0.06 0.78 7.56 -51.93 -0.39 0.39 16 35 H 0.11 1.86 7.47 -51.93 -0.39 1.47 16 36 H 0.10 1.15 5.85 -51.93 -0.30 0.85 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.90 7.07 -51.93 -0.37 0.54 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -29.29 302.64 -7.26 -36.55 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.31 Total: 7.93 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -0.92 Total: -12.81 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.36 Total: -39.10 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.29 -7.26 -36.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356049269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.797 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds