Wall clock time and date at job start Thu Apr 9 2020 12:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46881 * 2 1 4 4 H 1.08997 * 109.46662 * 304.99189 * 3 2 1 5 5 C 1.50705 * 109.46565 * 184.99683 * 3 2 1 6 6 H 1.07997 * 119.99946 * 239.99597 * 5 3 2 7 7 C 1.37880 * 119.99802 * 60.00198 * 5 3 2 8 8 N 1.31519 * 120.00227 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99804 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47059 * 59.99709 * 9 7 5 11 11 H 1.48496 * 109.46825 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46923 * 299.99889 * 9 7 5 13 13 N 1.46496 * 109.47378 * 65.00200 * 3 2 1 14 14 C 1.34774 * 119.99544 * 274.99692 * 13 3 2 15 15 O 1.21279 * 120.00472 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00020 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46925 * 300.00031 * 16 14 13 18 18 C 1.52997 * 109.47103 * 59.99861 * 16 14 13 19 19 C 1.52997 * 109.47238 * 180.02562 * 16 14 13 20 20 C 1.52998 * 117.49757 * 248.74658 * 19 16 14 21 21 C 1.53003 * 117.49978 * 180.08472 * 19 16 14 22 22 H 1.09002 * 109.46908 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47271 * 300.00478 * 1 2 3 24 24 H 1.08995 * 109.46871 * 60.00368 * 1 2 3 25 25 H 1.08991 * 109.47312 * 239.99492 * 2 1 3 26 26 H 1.09004 * 109.46781 * 119.99920 * 2 1 3 27 27 H 0.97000 * 119.99779 * 180.02562 * 8 7 5 28 28 H 0.96994 * 120.00700 * 94.99812 * 13 3 2 29 29 H 1.09004 * 109.47059 * 59.99503 * 17 16 14 30 30 H 1.08992 * 109.47060 * 179.97438 * 17 16 14 31 31 H 1.09004 * 109.46930 * 299.99901 * 17 16 14 32 32 H 1.08992 * 109.47280 * 59.99899 * 18 16 14 33 33 H 1.09002 * 109.46777 * 180.02562 * 18 16 14 34 34 H 1.09000 * 109.47140 * 300.00046 * 18 16 14 35 35 H 1.09001 * 115.55272 * 34.41359 * 19 16 14 36 36 H 1.09004 * 117.50171 * 359.97438 * 20 19 16 37 37 H 1.09001 * 117.50114 * 145.02267 * 20 19 16 38 38 H 1.08997 * 117.49922 * 214.97679 * 21 19 16 39 39 H 1.08998 * 117.49430 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3365 -2.1729 9 14 6.0050 0.8811 -1.3817 10 1 6.5974 0.1472 -0.2347 11 1 6.3978 0.2165 -2.6502 12 1 6.4995 2.2813 -1.3820 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3668 15 8 -0.3396 2.6319 0.4343 16 6 0.0366 3.3388 2.6543 17 6 0.0806 2.3225 3.7972 18 6 1.0071 4.4834 2.9522 19 6 -1.3827 3.8944 2.5210 20 6 -1.5461 5.4153 2.4923 21 6 -1.9728 4.6225 3.7303 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8294 -0.0619 -2.9494 28 1 2.2718 2.1233 1.9977 29 1 1.0916 1.9262 3.8923 30 1 -0.2072 2.8102 4.7284 31 1 -0.6108 1.5069 3.5850 32 1 0.9758 5.2074 2.1380 33 1 0.7191 4.9709 3.8836 34 1 2.0180 4.0872 3.0473 35 1 -2.0632 3.3035 1.9080 36 1 -0.6425 6.0202 2.5689 37 1 -2.3344 5.8251 1.8608 38 1 -3.0416 4.5110 3.9126 39 1 -1.3501 4.7053 4.6210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356049269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:27 Heat of formation + Delta-G solvation = -49.451153 kcal Electronic energy + Delta-G solvation = -18133.460992 eV Core-core repulsion = 15461.521282 eV Total energy + Delta-G solvation = -2671.939710 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.29100 -38.74731 -36.77102 -34.66190 -33.79325 -32.29430 -28.87548 -28.32428 -25.52964 -24.89436 -23.04860 -22.69797 -21.24760 -19.92113 -18.52325 -17.59616 -17.27227 -16.63063 -16.22025 -15.70223 -15.40595 -14.93491 -14.58833 -14.10922 -13.73469 -13.56194 -13.30699 -13.18467 -13.05161 -12.94264 -12.88419 -12.64518 -12.40871 -12.16851 -12.06129 -11.93171 -11.66729 -11.57635 -11.19390 -11.04107 -10.83224 -10.55199 -10.29337 -9.56613 -8.15139 -6.32801 1.44679 1.46590 1.54371 1.95761 2.36836 2.64505 3.05080 3.13996 3.67885 3.86218 4.04227 4.16638 4.23562 4.39585 4.48239 4.55925 4.56504 4.74788 4.76583 4.83163 4.90943 4.96030 5.01738 5.05658 5.09508 5.25025 5.28583 5.33625 5.36206 5.44110 5.44914 5.56965 5.67030 5.80758 5.96229 6.18489 6.75928 7.07182 7.35041 7.67010 8.90012 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.034960 B = 0.006482 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.713368 B = 4318.847812 C = 4659.027176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.007 1.007 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.703 5.703 14 C 0.506 3.494 15 O -0.591 6.591 16 C -0.045 4.045 17 C -0.132 4.132 18 C -0.139 4.139 19 C -0.152 4.152 20 C -0.188 4.188 21 C -0.149 4.149 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.022 0.978 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.264 0.736 28 H 0.400 0.600 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.758 6.350 14.376 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.011 0.989 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.352 5.352 14 C 0.293 3.707 15 O -0.472 6.472 16 C -0.048 4.048 17 C -0.189 4.189 18 C -0.196 4.196 19 C -0.170 4.170 20 C -0.225 4.225 21 C -0.186 4.186 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.235 0.765 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.270 6.219 13.528 15.794 hybrid contribution 0.971 -0.265 -0.725 1.240 sum -4.300 5.954 12.803 14.760 Atomic orbital electron populations 1.21669 0.97135 0.98995 1.00160 1.21773 0.93610 0.99315 1.01191 1.18319 0.93550 0.89068 0.81575 0.98866 1.21558 0.91464 1.38888 1.06675 0.91083 1.25784 1.03326 0.94380 0.95007 1.70053 1.37151 1.38377 1.09893 0.85431 0.79102 0.78439 0.77562 1.18841 1.21254 1.19665 1.46230 1.15663 1.56074 1.17222 1.21151 0.81475 0.78002 0.90066 1.90619 1.52599 1.61283 1.42697 1.20260 0.95304 0.97000 0.92274 1.21817 1.02511 0.97579 0.97015 1.21975 0.98239 0.96612 1.02790 1.21925 0.95790 0.95476 1.03857 1.23203 1.03793 0.93385 1.02081 1.23069 1.01763 1.01716 0.92050 0.93650 0.93738 0.95845 0.91135 0.94058 0.92649 0.76481 0.91540 0.88750 0.93418 0.93161 0.88649 0.91537 0.90058 0.87516 0.89455 0.87982 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.51 71.98 0.61 -5.07 16 2 C -0.12 -6.03 5.45 30.60 0.17 -5.87 16 3 C 0.28 14.52 2.24 44.25 0.10 14.62 16 4 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 5 C -0.55 -29.19 8.73 25.60 0.22 -28.97 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.81 5.29 84.65 0.45 1.26 16 8 N -0.92 -53.08 11.29 21.45 0.24 -52.84 16 9 Si 0.97 42.21 29.54 68.60 2.03 44.23 16 10 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 13 N -0.70 -29.32 4.81 -446.10 -2.14 -31.47 16 14 C 0.51 20.27 5.05 87.66 0.44 20.72 16 15 O -0.59 -29.01 12.78 -3.02 -0.04 -29.04 16 16 C -0.05 -1.26 0.72 -52.93 -0.04 -1.30 16 17 C -0.13 -2.97 8.21 71.98 0.59 -2.38 16 18 C -0.14 -3.19 6.97 71.98 0.50 -2.69 16 19 C -0.15 -4.16 4.75 -10.79 -0.05 -4.21 16 20 C -0.19 -4.30 9.57 30.62 0.29 -4.00 16 21 C -0.15 -2.77 9.39 30.62 0.29 -2.49 16 22 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.04 1.99 5.64 -2.39 -0.01 1.98 16 24 H 0.02 1.17 7.85 -2.39 -0.02 1.15 16 25 H 0.07 3.97 5.95 -2.39 -0.01 3.95 16 26 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.40 14.26 7.37 -92.71 -0.68 13.57 16 29 H 0.07 1.42 7.56 -2.39 -0.02 1.40 16 30 H 0.09 1.52 7.29 -2.39 -0.02 1.50 16 31 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.05 1.29 6.97 -2.39 -0.02 1.28 16 33 H 0.09 1.56 7.08 -2.39 -0.02 1.54 16 34 H 0.07 1.48 7.56 -2.39 -0.02 1.46 16 35 H 0.08 2.75 7.47 -2.39 -0.02 2.73 16 36 H 0.11 2.25 5.85 -2.38 -0.01 2.24 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 38 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 39 H 0.12 1.63 7.07 -2.39 -0.02 1.62 16 Total: -1.00 -66.35 302.64 4.01 -62.35 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.35 Total: 27.14 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 3.58 Total: -20.37 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -1.90 Total: -84.30 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.04 Total: -29.04 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -66.35 4.01 -62.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356049269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.895 kcal (2) G-P(sol) polarization free energy of solvation -66.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds