Wall clock time and date at job start Thu Apr 9 2020 12:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.53005 * 109.46864 * 240.00024 * 2 1 3 5 5 C 1.52997 * 109.47452 * 299.99825 * 4 2 1 6 6 C 1.53002 * 109.46817 * 300.00239 * 5 4 2 7 7 C 1.53000 * 109.47233 * 60.00194 * 6 5 4 8 8 C 1.52997 * 109.47060 * 299.99657 * 7 6 5 9 9 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 10 10 C 1.52992 * 109.47482 * 180.02562 * 8 7 6 11 11 C 1.53001 * 109.47279 * 65.00040 * 10 8 7 12 12 N 1.46497 * 109.47669 * 180.02562 * 11 10 8 13 13 C 1.34776 * 120.00452 * 180.02562 * 12 11 10 14 14 O 1.21691 * 119.99724 * 359.97438 * 13 12 11 15 15 C 1.46373 * 120.00424 * 180.02562 * 13 12 11 16 16 H 1.08002 * 119.99627 * 359.97438 * 15 13 12 17 17 C 1.40045 * 120.00203 * 180.02562 * 15 13 12 18 18 N 1.30670 * 119.99876 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00145 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46824 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47418 * 119.99065 * 19 17 15 22 22 H 1.48503 * 109.47210 * 239.99385 * 19 17 15 23 23 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47261 * 299.99608 * 1 2 3 25 25 H 1.09001 * 109.47377 * 60.00149 * 1 2 3 26 26 H 1.09002 * 109.46935 * 179.97438 * 4 2 1 27 27 H 1.09001 * 109.46812 * 60.00041 * 4 2 1 28 28 H 1.08993 * 109.47194 * 179.97438 * 5 4 2 29 29 H 1.09002 * 109.46695 * 59.99734 * 5 4 2 30 30 H 1.08992 * 109.47063 * 299.99823 * 6 5 4 31 31 H 1.09004 * 109.46733 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.47398 * 59.99826 * 7 6 5 33 33 H 1.09001 * 109.47194 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.47729 * 184.99759 * 10 8 7 35 35 H 1.09001 * 109.47563 * 305.00337 * 10 8 7 36 36 H 1.09001 * 109.46924 * 300.00271 * 11 10 8 37 37 H 1.09000 * 109.47104 * 59.99686 * 11 10 8 38 38 H 0.97003 * 119.99611 * 359.97438 * 12 11 10 39 39 H 0.97000 * 120.00278 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5301 -2.1638 -1.2493 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2492 8 6 2.0400 -0.7213 1.2492 9 1 3.1300 -0.7213 1.2492 10 6 1.5306 -0.0002 2.4987 11 6 2.1412 -0.6454 3.7445 12 7 1.6529 0.0446 4.9410 13 6 2.0603 -0.3540 6.1623 14 8 2.8334 -1.2875 6.2711 15 6 1.5720 0.3351 7.3578 16 1 0.8856 1.1633 7.2612 17 6 1.9958 -0.0788 8.6268 18 7 2.8267 -1.0805 8.7436 19 14 1.3732 0.8010 10.1525 20 1 0.4501 1.8931 9.7519 21 1 0.6518 -0.1639 11.0207 22 1 2.5231 1.3736 10.8976 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 3.1300 -0.7209 -1.2495 27 1 1.6766 -0.2074 -2.1392 28 1 1.8930 -2.6774 -2.1395 29 1 0.4401 -2.1637 -1.2493 30 1 3.1301 -2.8849 -0.0001 31 1 1.6764 -3.9125 0.0001 32 1 0.4401 -2.1638 1.2492 33 1 1.8938 -2.6773 2.1392 34 1 1.8189 1.0500 2.4552 35 1 0.4443 -0.0772 2.5452 36 1 1.8528 -1.6956 3.7881 37 1 3.2275 -0.5685 3.6981 38 1 1.0370 0.7890 4.8542 39 1 3.1200 -1.3675 9.6225 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357045115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:29 Heat of formation + Delta-G solvation = -81.805801 kcal Electronic energy + Delta-G solvation = -17301.528516 eV Core-core repulsion = 14628.185803 eV Total energy + Delta-G solvation = -2673.342713 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.53374 -37.17741 -34.24968 -32.48938 -32.03917 -31.38322 -28.23344 -26.66961 -25.67013 -23.22258 -22.04836 -20.61192 -19.61175 -18.36385 -17.05580 -15.83632 -15.27352 -15.10654 -14.57927 -14.23638 -13.96205 -13.82700 -13.54226 -12.94553 -12.73137 -12.29434 -12.25336 -11.90184 -11.56687 -11.47388 -11.21259 -11.09488 -11.03499 -10.99744 -10.82893 -10.44101 -10.32057 -10.16252 -10.13738 -9.90566 -9.74980 -8.81852 -7.55105 -7.40473 -6.14110 -4.59281 3.15397 3.23305 3.27974 4.14089 4.61895 4.63891 4.65646 4.69484 5.00517 5.17609 5.19158 5.31024 5.34810 5.45743 5.53072 5.65368 5.65875 5.66708 5.78981 5.87876 5.90798 5.96310 5.99770 6.05538 6.10847 6.14347 6.22181 6.33539 6.37374 6.43973 6.55227 6.74300 6.76743 7.47539 8.00075 8.18772 8.39118 9.07018 9.61393 10.65386 10.84720 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.054388 B = 0.004282 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.693220 B = 6538.055089 C = 6843.519743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 H 0.067 0.933 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.077 4.077 9 H 0.070 0.930 10 C -0.124 4.124 11 C 0.132 3.868 12 N -0.769 5.769 13 C 0.553 3.447 14 O -0.582 6.582 15 C -0.546 4.546 16 H 0.067 0.933 17 C 0.087 3.913 18 N -0.769 5.769 19 Si 0.907 3.093 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.379 0.621 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.196 1.438 -17.522 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.096 4.096 9 H 0.088 0.912 10 C -0.162 4.162 11 C 0.007 3.993 12 N -0.425 5.425 13 C 0.357 3.643 14 O -0.465 6.465 15 C -0.584 4.584 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.398 5.398 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.210 0.790 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.503 0.608 -17.324 17.685 hybrid contribution -0.561 0.805 0.704 1.208 sum -4.065 1.413 -16.620 17.168 Atomic orbital electron populations 1.21986 0.95507 1.02067 1.01361 1.21112 0.95912 0.98938 0.94471 0.91477 1.21556 1.00468 0.95691 0.97401 1.21568 1.00889 0.95663 0.97659 1.21533 1.00746 0.98665 0.94732 1.21697 1.00889 0.95303 0.97852 1.21079 1.00217 0.94753 0.93544 0.91196 1.21873 1.00793 0.99574 0.93980 1.20923 0.97669 0.96181 0.84506 1.46136 1.52674 1.37933 1.05716 1.18228 0.80829 0.83623 0.81630 1.90591 1.38466 1.31487 1.86003 1.20940 1.29728 1.17851 0.89841 0.91454 1.25710 0.93457 0.94045 1.00009 1.70038 1.24476 1.21320 1.23987 0.86333 0.79156 0.79894 0.81448 1.18807 1.20188 1.20195 0.92094 0.92320 0.93360 0.92156 0.92429 0.92626 0.91850 0.92137 0.92333 0.91782 0.91257 0.91973 0.91624 0.93362 0.93810 0.79028 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.15 37.16 0.30 -1.19 16 2 C -0.09 -0.89 2.72 -90.61 -0.25 -1.14 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -1.06 5.45 -26.73 -0.15 -1.21 16 5 C -0.12 -1.11 5.65 -26.73 -0.15 -1.26 16 6 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 7 C -0.12 -1.47 4.69 -26.73 -0.13 -1.59 16 8 C -0.08 -0.95 1.96 -90.63 -0.18 -1.12 16 9 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 10 C -0.12 -1.78 4.29 -26.73 -0.11 -1.90 16 11 C 0.13 2.60 5.43 -4.04 -0.02 2.58 16 12 N -0.77 -17.79 5.55 -61.72 -0.34 -18.13 16 13 C 0.55 16.26 7.75 -12.99 -0.10 16.16 16 14 O -0.58 -19.47 15.02 5.20 0.08 -19.39 16 15 C -0.55 -15.82 9.54 -35.63 -0.34 -16.16 16 16 H 0.07 1.79 7.85 -52.49 -0.41 1.37 16 17 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 18 N -0.77 -23.57 11.83 55.55 0.66 -22.91 16 19 Si 0.91 20.46 29.56 -169.99 -5.02 15.43 16 20 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H 0.06 0.60 4.81 -51.93 -0.25 0.35 16 24 H 0.06 0.60 6.55 -51.93 -0.34 0.26 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.77 6.43 -51.93 -0.33 0.43 16 33 H 0.07 0.98 6.56 -51.93 -0.34 0.63 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.91 6.71 -51.93 -0.35 0.56 16 36 H 0.05 1.01 6.56 -51.93 -0.34 0.67 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.38 7.67 8.45 -40.82 -0.35 7.32 16 39 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 LS Contribution 300.39 15.07 4.53 4.53 Total: -1.00 -33.97 300.39 -7.89 -41.85 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.41 Total: 4.47 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -1.37 Total: -5.85 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.31 Total: -41.04 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.08 Total: -19.39 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.97 -7.89 -41.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357045115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.953 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds