Wall clock time and date at job start Thu Apr 9 2020 12:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.53005 * 109.46864 * 240.00024 * 2 1 3 5 5 C 1.52997 * 109.47452 * 299.99825 * 4 2 1 6 6 C 1.53002 * 109.46817 * 300.00239 * 5 4 2 7 7 C 1.53000 * 109.47233 * 60.00194 * 6 5 4 8 8 C 1.52997 * 109.47060 * 299.99657 * 7 6 5 9 9 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 10 10 C 1.52992 * 109.47482 * 180.02562 * 8 7 6 11 11 C 1.53001 * 109.47279 * 65.00040 * 10 8 7 12 12 N 1.46497 * 109.47669 * 180.02562 * 11 10 8 13 13 C 1.34776 * 120.00452 * 180.02562 * 12 11 10 14 14 O 1.21691 * 119.99724 * 359.97438 * 13 12 11 15 15 C 1.46373 * 120.00424 * 180.02562 * 13 12 11 16 16 H 1.08002 * 119.99627 * 359.97438 * 15 13 12 17 17 C 1.40045 * 120.00203 * 180.02562 * 15 13 12 18 18 N 1.30670 * 119.99876 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00145 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46824 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47418 * 119.99065 * 19 17 15 22 22 H 1.48503 * 109.47210 * 239.99385 * 19 17 15 23 23 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47261 * 299.99608 * 1 2 3 25 25 H 1.09001 * 109.47377 * 60.00149 * 1 2 3 26 26 H 1.09002 * 109.46935 * 179.97438 * 4 2 1 27 27 H 1.09001 * 109.46812 * 60.00041 * 4 2 1 28 28 H 1.08993 * 109.47194 * 179.97438 * 5 4 2 29 29 H 1.09002 * 109.46695 * 59.99734 * 5 4 2 30 30 H 1.08992 * 109.47063 * 299.99823 * 6 5 4 31 31 H 1.09004 * 109.46733 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.47398 * 59.99826 * 7 6 5 33 33 H 1.09001 * 109.47194 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.47729 * 184.99759 * 10 8 7 35 35 H 1.09001 * 109.47563 * 305.00337 * 10 8 7 36 36 H 1.09001 * 109.46924 * 300.00271 * 11 10 8 37 37 H 1.09000 * 109.47104 * 59.99686 * 11 10 8 38 38 H 0.97003 * 119.99611 * 359.97438 * 12 11 10 39 39 H 0.97000 * 120.00278 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5301 -2.1638 -1.2493 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2492 8 6 2.0400 -0.7213 1.2492 9 1 3.1300 -0.7213 1.2492 10 6 1.5306 -0.0002 2.4987 11 6 2.1412 -0.6454 3.7445 12 7 1.6529 0.0446 4.9410 13 6 2.0603 -0.3540 6.1623 14 8 2.8334 -1.2875 6.2711 15 6 1.5720 0.3351 7.3578 16 1 0.8856 1.1633 7.2612 17 6 1.9958 -0.0788 8.6268 18 7 2.8267 -1.0805 8.7436 19 14 1.3732 0.8010 10.1525 20 1 0.4501 1.8931 9.7519 21 1 0.6518 -0.1639 11.0207 22 1 2.5231 1.3736 10.8976 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 3.1300 -0.7209 -1.2495 27 1 1.6766 -0.2074 -2.1392 28 1 1.8930 -2.6774 -2.1395 29 1 0.4401 -2.1637 -1.2493 30 1 3.1301 -2.8849 -0.0001 31 1 1.6764 -3.9125 0.0001 32 1 0.4401 -2.1638 1.2492 33 1 1.8938 -2.6773 2.1392 34 1 1.8189 1.0500 2.4552 35 1 0.4443 -0.0772 2.5452 36 1 1.8528 -1.6956 3.7881 37 1 3.2275 -0.5685 3.6981 38 1 1.0370 0.7890 4.8542 39 1 3.1200 -1.3675 9.6225 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357045115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:29 Heat of formation + Delta-G solvation = -104.330165 kcal Electronic energy + Delta-G solvation = -17302.505246 eV Core-core repulsion = 14628.185803 eV Total energy + Delta-G solvation = -2674.319443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51655 -39.26645 -35.90901 -34.58156 -33.27102 -32.62378 -29.65172 -28.18581 -27.04331 -24.54492 -22.99801 -21.75395 -21.68139 -19.31455 -19.08661 -17.45027 -16.84108 -16.30289 -16.07528 -15.85835 -15.30091 -15.05355 -14.71946 -14.36408 -14.05821 -13.71547 -13.55872 -13.22352 -12.93488 -12.78980 -12.65756 -12.48745 -12.45502 -12.35790 -12.02100 -11.96808 -11.89650 -11.46938 -11.04401 -10.95471 -10.82180 -10.71478 -9.87022 -9.46791 -8.29724 -6.86678 1.40185 1.40594 1.58903 2.24988 2.46541 3.13434 3.60951 3.74769 3.79354 3.88668 4.13908 4.24747 4.41166 4.45799 4.51221 4.54313 4.55831 4.66519 4.75415 4.81741 4.86654 5.03573 5.07092 5.13549 5.15429 5.22303 5.27484 5.30614 5.31461 5.39013 5.46101 5.49972 5.57786 5.73131 5.87610 6.24693 6.28614 6.85902 7.56089 8.48900 8.67132 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.054388 B = 0.004282 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.693220 B = 6538.055089 C = 6843.519743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.074 4.074 9 H 0.060 0.940 10 C -0.108 4.108 11 C 0.135 3.865 12 N -0.757 5.757 13 C 0.533 3.467 14 O -0.636 6.636 15 C -0.574 4.574 16 H 0.089 0.911 17 C 0.026 3.974 18 N -0.824 5.824 19 Si 1.001 2.999 20 H -0.246 1.246 21 H -0.268 1.268 22 H -0.268 1.268 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.031 0.969 37 H 0.022 0.978 38 H 0.395 0.605 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.766 3.116 -18.326 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.093 4.093 9 H 0.078 0.922 10 C -0.146 4.146 11 C 0.010 3.990 12 N -0.411 5.411 13 C 0.337 3.663 14 O -0.524 6.524 15 C -0.611 4.611 16 H 0.107 0.893 17 C -0.188 4.188 18 N -0.454 5.454 19 Si 0.820 3.180 20 H -0.169 1.169 21 H -0.193 1.193 22 H -0.193 1.193 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.041 0.959 38 H 0.229 0.771 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.104 2.319 -18.187 19.032 hybrid contribution -0.051 0.248 0.902 0.937 sum -5.154 2.567 -17.285 18.219 Atomic orbital electron populations 1.21979 0.94808 1.02176 1.01872 1.21079 0.96425 0.98919 0.93581 0.91010 1.21557 1.00393 0.95678 0.97340 1.21554 1.01177 0.95547 0.97147 1.21524 1.00468 0.98969 0.94616 1.21669 1.01101 0.95279 0.97677 1.21052 0.99662 0.94855 0.93722 0.92174 1.21771 1.01009 0.99789 0.91998 1.21029 0.96739 0.95667 0.85564 1.45846 1.52044 1.38012 1.05202 1.18702 0.80566 0.83284 0.83741 1.90543 1.40846 1.33747 1.87222 1.21491 1.30428 1.18635 0.90525 0.89312 1.27033 0.93022 0.94569 1.04216 1.70207 1.26099 1.23441 1.25611 0.84924 0.78820 0.78666 0.75546 1.16868 1.19283 1.19305 0.92185 0.92848 0.91847 0.92381 0.90778 0.91312 0.91327 0.92621 0.91886 0.91315 0.94122 0.90844 0.90494 0.95101 0.95929 0.77110 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.15 71.98 0.59 -1.99 16 2 C -0.08 -1.51 2.72 -10.79 -0.03 -1.54 16 3 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.11 -1.81 5.45 30.60 0.17 -1.64 16 5 C -0.12 -1.89 5.65 30.59 0.17 -1.72 16 6 C -0.12 -2.39 5.92 30.60 0.18 -2.21 16 7 C -0.12 -2.93 4.69 30.59 0.14 -2.79 16 8 C -0.07 -1.77 1.96 -10.80 -0.02 -1.79 16 9 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 10 C -0.11 -3.03 4.29 30.59 0.13 -2.90 16 11 C 0.13 5.47 5.43 86.38 0.47 5.94 16 12 N -0.76 -35.57 5.55 -467.41 -2.59 -38.16 16 13 C 0.53 32.25 7.75 86.36 0.67 32.92 16 14 O -0.64 -44.50 15.02 -4.32 -0.06 -44.57 16 15 C -0.57 -33.44 9.54 24.83 0.24 -33.20 16 16 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 17 C 0.03 1.50 5.50 85.30 0.47 1.97 16 18 N -0.82 -51.73 11.83 21.83 0.26 -51.47 16 19 Si 1.00 41.57 29.56 68.60 2.03 43.59 16 20 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 22 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 23 H 0.06 1.04 4.81 -2.39 -0.01 1.03 16 24 H 0.05 0.96 6.55 -2.39 -0.02 0.95 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.06 6.43 -2.39 -0.02 1.05 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.60 6.43 -2.39 -0.02 1.59 16 33 H 0.04 1.21 6.56 -2.39 -0.02 1.19 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 2.01 6.71 -2.39 -0.02 2.00 16 36 H 0.03 1.36 6.56 -2.39 -0.02 1.35 16 37 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.40 15.79 8.45 -92.71 -0.78 15.01 16 39 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 Total: -1.00 -75.96 300.39 3.05 -72.91 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.25 Total: 26.65 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 3.18 Total: -8.96 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -2.34 Total: -89.63 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.06 Total: -44.57 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -75.96 3.05 -72.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357045115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.419 kcal (2) G-P(sol) polarization free energy of solvation -75.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds