Wall clock time and date at job start Thu Apr 9 2020 12:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47191 * 2 1 4 4 H 1.08999 * 109.49736 * 305.06222 * 3 2 1 5 5 C 1.53041 * 109.49784 * 185.00000 * 3 2 1 6 6 C 1.53038 * 109.53768 * 178.65386 * 5 3 2 7 7 C 1.53187 * 109.31606 * 61.36503 * 6 5 3 8 8 N 1.46926 * 108.77227 * 305.36475 * 7 6 5 9 9 C 1.34787 * 120.62918 * 233.33389 * 8 7 6 10 10 O 1.21282 * 119.99956 * 180.02562 * 9 8 7 11 11 C 1.50697 * 119.99793 * 0.02562 * 9 8 7 12 12 C 1.53003 * 109.47058 * 180.02562 * 11 9 8 13 13 C 1.50692 * 109.47386 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99711 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00053 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00194 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99830 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47214 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47379 * 119.99945 * 17 15 13 20 20 H 1.48499 * 109.47156 * 239.99830 * 17 15 13 21 21 C 1.46924 * 118.73991 * 53.60881 * 8 7 6 22 22 H 1.08997 * 109.46872 * 59.99973 * 1 2 3 23 23 H 1.09004 * 109.47099 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47415 * 300.00197 * 1 2 3 25 25 H 1.08994 * 109.46939 * 239.99716 * 2 1 3 26 26 H 1.08997 * 109.46872 * 120.00027 * 2 1 3 27 27 H 1.09003 * 109.46022 * 58.62772 * 5 3 2 28 28 H 1.09007 * 109.45589 * 298.67202 * 5 3 2 29 29 H 1.08999 * 109.49677 * 301.40907 * 6 5 3 30 30 H 1.09001 * 109.52131 * 181.33314 * 6 5 3 31 31 H 1.09002 * 109.58471 * 185.57893 * 7 6 5 32 32 H 1.08996 * 109.58894 * 65.14790 * 7 6 5 33 33 H 1.08997 * 109.47228 * 299.99525 * 11 9 8 34 34 H 1.08997 * 109.47248 * 60.00068 * 11 9 8 35 35 H 1.09003 * 109.46906 * 300.00171 * 12 11 9 36 36 H 1.09002 * 109.47351 * 59.99533 * 12 11 9 37 37 H 0.96993 * 120.00266 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.58516 * 66.18182 * 21 8 7 39 39 H 1.09002 * 109.58479 * 186.60340 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9822 -0.8410 5 6 3.5653 1.4450 -0.1257 6 6 4.0736 2.8881 -0.1596 7 6 3.6952 3.5894 1.1487 8 7 2.2451 3.4650 1.3495 9 6 1.4864 4.5568 1.5714 10 8 0.2905 4.4409 1.7362 11 6 2.1243 5.9215 1.6147 12 6 1.0502 6.9783 1.8802 13 6 1.6881 8.3428 1.9241 14 1 2.7532 8.4460 1.7777 15 6 0.9120 9.4596 2.1512 16 7 -0.3850 9.3341 2.3289 17 14 1.7029 11.1510 2.2063 18 1 3.1647 11.0216 1.9792 19 1 1.1111 12.0090 1.1484 20 1 1.4617 11.7672 3.5357 21 6 1.6386 2.1274 1.3101 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8547 0.9363 -1.0453 28 1 4.0009 0.9264 0.7285 29 1 3.6193 3.4142 -0.9991 30 1 5.1577 2.8898 -0.2729 31 1 3.9670 4.6434 1.0901 32 1 4.2208 3.1200 1.9802 33 1 2.8668 5.9503 2.4121 34 1 2.6083 6.1267 0.6599 35 1 0.3073 6.9495 1.0831 36 1 0.5665 6.7728 2.8352 37 1 -0.9309 10.1196 2.4890 38 1 1.9965 1.5389 2.1548 39 1 0.5533 2.2168 1.3580 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359980562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:59 Heat of formation + Delta-G solvation = -90.753990 kcal Electronic energy + Delta-G solvation = -17432.978557 eV Core-core repulsion = 14759.247822 eV Total energy + Delta-G solvation = -2673.730735 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.23610 -38.83065 -35.70442 -35.48745 -33.17155 -32.97241 -30.28554 -28.06385 -26.12435 -25.12028 -23.43419 -22.32040 -21.06605 -19.79799 -18.82998 -17.68579 -16.96161 -16.62628 -16.43485 -15.75634 -15.28685 -14.85312 -14.79558 -14.43463 -14.39322 -14.14806 -13.74630 -13.57988 -13.32060 -12.92915 -12.84898 -12.56037 -12.44846 -12.06695 -11.96239 -11.88846 -11.59377 -11.58045 -11.45197 -11.29023 -11.16819 -10.63975 -10.58693 -9.58892 -8.18581 -6.33137 1.42050 1.43855 1.57209 1.67048 2.07625 2.43184 3.14439 3.63448 3.80713 3.88613 4.00855 4.12234 4.27679 4.37172 4.41464 4.45274 4.50093 4.53029 4.64108 4.72611 4.85539 4.89262 5.01667 5.02990 5.05006 5.12390 5.19568 5.22242 5.32698 5.40820 5.47335 5.52774 5.60098 5.68496 5.83822 6.16355 6.42285 6.85325 7.26101 7.37450 8.94607 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.041209 B = 0.004832 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.306716 B = 5793.397011 C = 6302.320275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.108 4.108 3 C -0.099 4.099 4 H 0.052 0.948 5 C -0.109 4.109 6 C -0.132 4.132 7 C 0.096 3.904 8 N -0.614 5.614 9 C 0.507 3.493 10 O -0.594 6.594 11 C -0.114 4.114 12 C 0.043 3.957 13 C -0.542 4.542 14 H 0.077 0.923 15 C -0.007 4.007 16 N -0.939 5.939 17 Si 0.976 3.024 18 H -0.251 1.251 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.110 3.890 22 H 0.044 0.956 23 H 0.068 0.932 24 H 0.041 0.959 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.101 0.899 35 H -0.020 1.020 36 H -0.019 1.019 37 H 0.263 0.737 38 H 0.078 0.922 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.738 -18.636 -5.460 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.146 4.146 3 C -0.118 4.118 4 H 0.071 0.929 5 C -0.146 4.146 6 C -0.170 4.170 7 C -0.025 4.025 8 N -0.347 5.347 9 C 0.297 3.703 10 O -0.474 6.474 11 C -0.154 4.154 12 C 0.005 3.995 13 C -0.580 4.580 14 H 0.095 0.905 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.800 3.200 18 H -0.174 1.174 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.012 4.012 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.119 0.881 35 H -0.002 1.002 36 H -0.001 1.001 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.983 -18.616 -5.342 22.775 hybrid contribution -0.652 1.071 0.172 1.266 sum 11.331 -17.545 -5.170 21.516 Atomic orbital electron populations 1.21857 0.96726 1.01986 1.01106 1.21484 0.95166 0.94529 1.03397 1.21536 0.97595 0.96645 0.96014 0.92931 1.21573 0.93080 0.96465 1.03489 1.21931 1.02701 0.96113 0.96272 1.22082 0.78140 1.03104 0.99188 1.48310 1.09480 1.06023 1.70877 1.21436 0.86546 0.87687 0.74641 1.90626 1.17708 1.87327 1.51771 1.21620 0.99937 0.89674 1.04156 1.18696 0.93274 0.93125 0.94402 1.21729 0.95184 0.92083 1.48974 0.90489 1.26164 0.95244 1.04463 0.94594 1.70191 1.06689 1.31121 1.49904 0.85243 0.79311 0.77882 0.77611 1.17448 1.20606 1.20586 1.21756 0.98509 0.82229 0.98704 0.93700 0.91297 0.94023 0.90086 0.90583 0.90063 0.90299 0.92826 0.87837 0.89061 0.89346 0.87942 0.88107 1.00207 1.00102 0.92843 0.90361 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.67 71.98 0.70 -2.30 16 2 C -0.11 -1.69 5.41 30.59 0.17 -1.52 16 3 C -0.10 -1.97 2.33 -10.72 -0.03 -2.00 16 4 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 5 C -0.11 -1.57 5.17 30.62 0.16 -1.41 16 6 C -0.13 -2.12 6.08 30.67 0.19 -1.94 16 7 C 0.10 2.01 6.34 86.36 0.55 2.56 16 8 N -0.61 -18.68 2.97 -818.91 -2.43 -21.11 16 9 C 0.51 21.30 7.70 87.65 0.67 21.97 16 10 O -0.59 -31.18 15.40 -3.04 -0.05 -31.23 16 11 C -0.11 -4.85 3.99 29.85 0.12 -4.73 16 12 C 0.04 2.46 4.26 29.85 0.13 2.59 16 13 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 14 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 15 C -0.01 -0.44 5.46 84.66 0.46 0.03 16 16 N -0.94 -60.60 13.29 21.45 0.28 -60.31 16 17 Si 0.98 44.72 29.54 68.60 2.03 46.75 16 18 H -0.25 -10.54 7.11 99.48 0.71 -9.84 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 C 0.11 2.94 5.33 86.36 0.46 3.40 16 22 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.04 0.92 6.70 -2.39 -0.02 0.91 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.92 5.94 -2.39 -0.01 1.91 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 3.82 7.95 -2.39 -0.02 3.81 16 34 H 0.10 3.79 7.69 -2.39 -0.02 3.78 16 35 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 36 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 37 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.06 2.01 5.73 -2.39 -0.01 1.99 16 Total: -1.00 -77.51 309.17 4.63 -72.88 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.99 Total: 7.58 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 3.81 Total: -14.55 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -2.15 Total: -81.43 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.05 Total: -31.23 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -77.51 4.63 -72.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359980562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.878 kcal (2) G-P(sol) polarization free energy of solvation -77.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds