Wall clock time and date at job start Thu Apr 9 2020 12:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46878 * 2 1 4 4 C 1.53009 * 109.46864 * 119.99352 * 2 1 3 5 5 C 1.53003 * 109.46864 * 180.02562 * 4 2 1 6 6 H 1.08995 * 109.47007 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.46939 * 60.00044 * 5 4 2 8 8 C 1.34775 * 119.99964 * 166.12881 * 7 5 4 9 9 O 1.21691 * 119.99965 * 0.02562 * 8 7 5 10 10 C 1.46368 * 120.00198 * 180.02562 * 8 7 5 11 11 H 1.08004 * 120.00314 * 0.02562 * 10 8 7 12 12 C 1.40051 * 120.00269 * 180.02562 * 10 8 7 13 13 N 1.30672 * 119.99580 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00262 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47002 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46674 * 120.00026 * 14 12 10 17 17 H 1.48496 * 109.47383 * 240.00314 * 14 12 10 18 18 C 1.52996 * 109.47024 * 300.00406 * 5 4 2 19 19 C 1.52995 * 109.47605 * 60.00117 * 18 5 4 20 20 C 1.53004 * 109.47203 * 179.97438 * 19 18 5 21 21 C 1.52997 * 109.47045 * 59.99625 * 19 18 5 22 22 C 1.52991 * 109.47312 * 239.99336 * 2 1 3 23 23 H 1.09004 * 109.47074 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47517 * 300.00232 * 1 2 3 25 25 H 1.09001 * 109.47093 * 60.00811 * 1 2 3 26 26 H 1.08998 * 109.46921 * 300.00276 * 4 2 1 27 27 H 1.08996 * 109.46805 * 60.00103 * 4 2 1 28 28 H 0.96996 * 120.00110 * 346.13613 * 7 5 4 29 29 H 0.97008 * 119.99765 * 179.97438 * 13 12 10 30 30 H 1.09001 * 109.47462 * 299.99541 * 18 5 4 31 31 H 1.09006 * 109.46900 * 180.02562 * 18 5 4 32 32 H 1.09002 * 109.46682 * 180.02562 * 20 19 18 33 33 H 1.08995 * 109.46958 * 299.99898 * 20 19 18 34 34 H 1.08996 * 109.47161 * 60.00245 * 20 19 18 35 35 H 1.09000 * 109.47449 * 283.50756 * 21 19 18 36 36 H 1.09004 * 109.47160 * 43.51312 * 21 19 18 37 37 H 1.09007 * 109.46995 * 163.51391 * 21 19 18 38 38 H 1.09001 * 109.47662 * 299.99840 * 22 2 1 39 39 H 1.09001 * 109.47162 * 59.99894 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5700 -0.7206 1.2497 6 1 3.9333 -1.2347 2.1395 7 7 4.0578 0.6608 1.2499 8 6 5.3506 0.9189 1.5300 9 8 6.1128 0.0045 1.7823 10 6 5.8379 2.2991 1.5307 11 1 5.1614 3.1108 1.3072 12 6 7.1814 2.5673 1.8213 13 7 8.0001 1.5852 2.0912 14 14 7.8035 4.3287 1.8215 15 1 6.6864 5.2482 1.4869 16 1 8.3353 4.6656 3.1665 17 1 8.8829 4.4727 0.8120 18 6 4.0805 -1.4415 0.0006 19 6 3.5706 -0.7204 -1.2487 20 6 4.0817 -1.4411 -2.4979 21 6 4.0800 0.7223 -1.2485 22 6 2.0400 -0.7213 -1.2491 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.6766 -0.2072 2.1393 27 1 1.6766 -1.7488 1.2495 28 1 3.4503 1.3897 1.0485 29 1 8.9308 1.7709 2.2921 30 1 3.7176 -2.4694 0.0004 31 1 5.1706 -1.4415 0.0010 32 1 3.7187 -0.9270 -3.3879 33 1 5.1717 -1.4403 -2.4974 34 1 3.7191 -2.4689 -2.4983 35 1 3.4980 1.3130 -0.5411 36 1 5.1301 0.7367 -0.9565 37 1 3.9748 1.1449 -2.2478 38 1 1.6768 -1.7490 -1.2490 39 1 1.6767 -0.2076 -2.1391 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000143837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:37 Heat of formation + Delta-G solvation = -56.195022 kcal Electronic energy + Delta-G solvation = -18604.261016 eV Core-core repulsion = 15932.028870 eV Total energy + Delta-G solvation = -2672.232146 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.91922 -36.54709 -33.78482 -33.04085 -32.14951 -29.70594 -26.70590 -26.26869 -25.91339 -25.88557 -21.48781 -20.34395 -19.43990 -17.65607 -17.30012 -15.33610 -15.14706 -14.79020 -14.12675 -13.94561 -13.68102 -13.39581 -12.83752 -12.45460 -12.44280 -12.19632 -11.98171 -11.68421 -11.48281 -11.29772 -11.14553 -11.11346 -10.93103 -10.71619 -10.49541 -10.35915 -10.26626 -10.10838 -9.87500 -9.66751 -9.39618 -8.79671 -7.49180 -7.20131 -6.12672 -4.57365 3.15035 3.23578 3.27549 4.14688 4.65271 4.89452 4.95543 5.05849 5.09868 5.39073 5.50379 5.61028 5.74337 5.79589 5.82812 5.88873 5.93075 6.02963 6.04846 6.08062 6.15179 6.25110 6.26934 6.35206 6.39911 6.48539 6.60239 6.62178 6.74103 6.88728 6.91708 7.08380 7.25246 7.48471 8.01142 8.22727 8.41485 9.08804 9.64194 10.66831 10.88222 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.030571 B = 0.007382 C = 0.007108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.666073 B = 3792.315839 C = 3938.272519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.076 0.924 4 C -0.118 4.118 5 C 0.160 3.840 6 H 0.063 0.937 7 N -0.757 5.757 8 C 0.559 3.441 9 O -0.580 6.580 10 C -0.546 4.546 11 H 0.065 0.935 12 C 0.089 3.911 13 N -0.769 5.769 14 Si 0.902 3.098 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.277 1.277 18 C -0.117 4.117 19 C -0.059 4.059 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.097 4.097 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.379 0.621 29 H 0.266 0.734 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.054 0.946 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.776 -2.398 -5.899 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.094 0.906 4 C -0.156 4.156 5 C 0.053 3.947 6 H 0.081 0.919 7 N -0.415 5.415 8 C 0.363 3.637 9 O -0.463 6.463 10 C -0.583 4.583 11 H 0.083 0.917 12 C -0.130 4.130 13 N -0.398 5.398 14 Si 0.727 3.273 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.156 4.156 19 C -0.059 4.059 20 C -0.195 4.195 21 C -0.194 4.194 22 C -0.135 4.135 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.214 0.786 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.028 -3.139 -5.652 12.783 hybrid contribution 0.061 1.187 -0.114 1.194 sum -10.967 -1.952 -5.765 12.543 Atomic orbital electron populations 1.21830 0.95881 1.01287 1.01224 1.21196 0.94519 1.00444 0.95244 0.90592 1.21838 0.95911 1.00436 0.97403 1.20408 0.91269 0.86027 0.96960 0.91890 1.46533 1.12140 1.05040 1.77770 1.18083 0.79156 0.90199 0.76289 1.90591 1.55078 1.47288 1.53380 1.20925 0.94975 0.91596 1.50789 0.91693 1.25673 0.96713 0.97809 0.92852 1.70036 1.04229 1.31806 1.33713 0.86406 0.79213 0.83477 0.78182 1.18848 1.20281 1.20265 1.21965 1.02246 0.97115 0.94251 1.20461 0.94046 0.96678 0.94729 1.21857 1.01190 0.99382 0.97107 1.22273 1.03127 0.94630 0.99351 1.21613 0.95316 0.99676 0.96885 0.93096 0.92940 0.93078 0.92026 0.91755 0.78648 0.92344 0.93233 0.90629 0.93380 0.92741 0.93470 0.91139 0.91464 0.95385 0.92682 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.10 -1.26 2.37 -90.62 -0.21 -1.47 16 3 H 0.08 1.08 5.14 -51.93 -0.27 0.81 16 4 C -0.12 -1.71 4.84 -26.72 -0.13 -1.84 16 5 C 0.16 3.02 2.74 -67.93 -0.19 2.83 16 6 H 0.06 1.35 7.93 -51.93 -0.41 0.94 16 7 N -0.76 -16.29 2.84 -55.22 -0.16 -16.45 16 8 C 0.56 15.38 6.10 -12.99 -0.08 15.30 16 9 O -0.58 -18.34 14.03 5.20 0.07 -18.27 16 10 C -0.55 -15.19 9.54 -35.63 -0.34 -15.53 16 11 H 0.06 1.68 7.85 -52.48 -0.41 1.26 16 12 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 13 N -0.77 -23.04 11.83 55.55 0.66 -22.39 16 14 Si 0.90 20.25 29.56 -169.99 -5.02 15.22 16 15 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 C -0.12 -2.14 4.32 -26.74 -0.12 -2.26 16 19 C -0.06 -0.94 0.77 -154.48 -0.12 -1.06 16 20 C -0.14 -2.01 8.41 37.16 0.31 -1.70 16 21 C -0.14 -2.47 7.06 37.16 0.26 -2.20 16 22 C -0.10 -1.30 4.02 -26.71 -0.11 -1.41 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.38 7.38 5.63 -40.82 -0.23 7.15 16 29 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.70 7.24 -51.93 -0.38 1.33 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.25 3.28 -51.93 -0.17 1.08 16 36 H 0.07 1.50 6.71 -51.93 -0.35 1.15 16 37 H 0.03 0.45 8.03 -51.92 -0.42 0.04 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 294.10 15.07 4.43 4.43 Total: -1.00 -31.88 294.10 -6.91 -38.79 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.42 Total: 6.85 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -0.47 Total: -8.19 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.50 Total: -38.83 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.07 Total: -18.27 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.88 -6.91 -38.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000143837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.407 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds