Wall clock time and date at job start Thu Apr 9 2020 12:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 108.98090 * 2 1 4 4 C 1.50734 * 108.99534 * 118.85199 * 2 1 3 5 5 N 1.47608 * 108.45196 * 213.99969 * 4 2 1 6 6 C 1.46900 * 110.99904 * 152.97379 * 5 4 2 7 7 C 1.52995 * 109.47403 * 53.02332 * 6 5 4 8 8 C 1.50697 * 115.55116 * 280.71427 * 7 6 5 9 9 H 1.08006 * 120.00070 * 144.47123 * 8 7 6 10 10 C 1.37874 * 120.00262 * 324.46613 * 8 7 6 11 11 N 1.31519 * 119.99903 * 338.88581 * 10 8 7 12 12 Si 1.86797 * 120.00101 * 158.87636 * 10 8 7 13 13 H 1.48503 * 109.47018 * 90.00491 * 12 10 8 14 14 H 1.48493 * 109.47290 * 210.00502 * 12 10 8 15 15 H 1.48499 * 109.47544 * 330.00643 * 12 10 8 16 16 C 1.53008 * 117.49792 * 135.00419 * 7 6 5 17 17 C 1.53006 * 117.49779 * 66.38303 * 7 6 5 18 18 C 1.40462 * 114.42679 * 279.55305 * 5 4 2 19 19 C 1.54399 * 111.44315 * 61.24619 * 18 5 4 20 20 C 1.50724 * 109.19624 * 284.54088 * 19 18 5 21 21 O 1.43931 * 109.00044 * 241.22328 * 2 1 3 22 22 H 1.09000 * 109.47044 * 301.14746 * 1 2 3 23 23 H 1.09004 * 109.46973 * 61.14733 * 1 2 3 24 24 H 1.08991 * 109.47104 * 181.14483 * 1 2 3 25 25 H 1.08994 * 109.64201 * 94.30695 * 4 2 1 26 26 H 1.09003 * 109.81371 * 333.78873 * 4 2 1 27 27 H 1.09005 * 109.46962 * 173.02716 * 6 5 4 28 28 H 1.09006 * 109.46875 * 293.02415 * 6 5 4 29 29 H 0.96991 * 119.99747 * 185.32006 * 11 10 8 30 30 H 1.09003 * 117.49641 * 0.02562 * 16 7 6 31 31 H 1.08994 * 117.49806 * 145.02352 * 16 7 6 32 32 H 1.08996 * 117.50135 * 214.97777 * 17 7 6 33 33 H 1.09003 * 117.49728 * 0.02562 * 17 7 6 34 34 H 1.08996 * 109.08695 * 300.74112 * 18 5 4 35 35 H 1.09001 * 109.03303 * 181.71263 * 18 5 4 36 36 H 1.08996 * 109.52532 * 44.47757 * 19 18 5 37 37 H 1.09001 * 109.52254 * 164.60610 * 19 18 5 38 38 H 1.08996 * 108.80679 * 212.42589 * 20 19 18 39 39 H 1.08998 * 108.80630 * 330.68878 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8846 1.0308 0.0000 4 6 2.0207 -0.6878 1.2483 5 7 3.2704 -0.0328 1.6821 6 6 3.4606 -0.1700 3.1323 7 6 3.3575 -1.6456 3.5229 8 6 1.9577 -2.1926 3.6330 9 1 1.7506 -3.2102 3.3362 10 6 0.9412 -1.3940 4.1126 11 7 1.2237 -0.3401 4.8468 12 14 -0.8372 -1.8089 3.7193 13 1 -1.3807 -2.7051 4.7713 14 1 -1.6380 -0.5593 3.6713 15 1 -0.9066 -2.4922 2.4027 16 6 4.4095 -2.1960 4.4881 17 6 4.4467 -2.5899 3.0100 18 6 4.4161 -0.4466 0.9828 19 6 4.3039 -0.1272 -0.5236 20 6 3.3665 -1.1142 -1.1710 21 8 1.9987 -0.6551 -1.1928 22 1 -0.3633 0.5316 0.8795 23 1 -0.3633 0.4959 -0.9001 24 1 -0.3633 -1.0274 0.0205 25 1 2.2128 -1.7394 1.0358 26 1 1.2710 -0.6041 2.0352 27 1 4.4443 0.2109 3.4073 28 1 2.6916 0.3989 3.6550 29 1 0.5081 0.1772 5.2482 30 1 5.1748 -1.5067 4.8450 31 1 4.0891 -2.9539 5.2029 32 1 4.1508 -3.6069 2.7526 33 1 5.2369 -2.1597 2.3946 34 1 4.5429 -1.5215 1.1107 35 1 5.2867 0.0661 1.3918 36 1 3.9160 0.8830 -0.6540 37 1 5.2880 -0.2020 -0.9862 38 1 3.6959 -1.2921 -2.1947 39 1 3.4117 -2.0543 -0.6212 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259490.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:08 Heat of formation + Delta-G solvation = -4.537270 kcal Electronic energy + Delta-G solvation = -19088.443684 eV Core-core repulsion = 16418.451586 eV Total energy + Delta-G solvation = -2669.992098 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.51327 -37.07295 -34.42274 -33.04766 -32.22312 -29.95001 -26.64852 -26.06637 -25.20658 -22.99770 -21.43457 -20.16233 -19.61530 -19.06319 -16.54323 -16.33096 -15.42635 -15.14801 -14.69940 -14.23912 -13.71917 -13.36420 -12.98368 -12.70372 -12.64123 -12.38485 -12.00323 -11.75651 -11.18791 -11.12982 -11.03375 -10.94067 -10.70503 -10.47417 -10.21612 -10.12968 -10.06279 -9.91491 -9.66191 -9.13660 -8.85218 -8.79348 -8.04123 -7.14103 -6.18756 -4.10731 3.17701 3.28562 3.33788 4.19162 4.27295 4.73691 4.91404 5.22584 5.29532 5.48477 5.54369 5.66862 5.82956 5.90858 5.95737 6.00684 6.15570 6.22854 6.27251 6.28857 6.35423 6.39261 6.54250 6.55660 6.60065 6.62141 6.72568 6.79136 6.95805 7.15978 7.23111 7.34420 7.54557 7.71139 7.93383 8.09674 8.27473 8.49580 8.79163 9.39619 10.83411 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.013298 C = 0.009187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.509626 B = 2105.004327 C = 3047.111830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.084 3.916 3 H 0.064 0.936 4 C 0.046 3.954 5 N -0.548 5.548 6 C 0.085 3.915 7 C 0.028 3.972 8 C -0.492 4.492 9 H 0.059 0.941 10 C 0.077 3.923 11 N -0.864 5.864 12 Si 0.867 3.133 13 H -0.280 1.280 14 H -0.279 1.279 15 H -0.265 1.265 16 C -0.201 4.201 17 C -0.219 4.219 18 C 0.056 3.944 19 C -0.154 4.154 20 C 0.066 3.934 21 O -0.400 6.400 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.110 0.890 27 H 0.035 0.965 28 H 0.124 0.876 29 H 0.265 0.735 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 1.371 -7.636 8.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 H 0.082 0.918 4 C -0.081 4.081 5 N -0.270 5.270 6 C -0.041 4.041 7 C 0.026 3.974 8 C -0.529 4.529 9 H 0.077 0.923 10 C -0.126 4.126 11 N -0.500 5.500 12 Si 0.693 3.307 13 H -0.206 1.206 14 H -0.204 1.204 15 H -0.190 1.190 16 C -0.240 4.240 17 C -0.257 4.257 18 C -0.074 4.074 19 C -0.192 4.192 20 C -0.010 4.010 21 O -0.320 6.320 22 H 0.088 0.912 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.128 0.872 27 H 0.054 0.946 28 H 0.142 0.858 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.436 2.029 -7.853 8.469 hybrid contribution -0.420 -1.211 0.364 1.333 sum 2.016 0.818 -7.489 7.799 Atomic orbital electron populations 1.21837 0.94300 1.02481 1.01666 1.22132 0.93868 0.96348 0.84958 0.91850 1.22506 0.93213 0.95887 0.96508 1.59605 1.02250 1.59272 1.05918 1.22004 1.01274 0.95944 0.84906 1.19690 0.89728 0.91752 0.96188 1.20424 0.90485 0.98116 1.43860 0.92326 1.24879 0.98690 0.94872 0.94200 1.69863 1.32599 1.18594 1.28969 0.86980 0.85382 0.78518 0.79784 1.20584 1.20408 1.18970 1.22916 1.05116 1.04451 0.91494 1.23080 1.04600 1.00677 0.97300 1.21437 0.94022 0.99314 0.92655 1.22105 0.99525 1.00915 0.96704 1.22232 0.82097 0.96527 1.00181 1.88166 1.27133 1.78373 1.38371 0.91243 0.92586 0.92251 0.93267 0.87178 0.94604 0.85831 0.92463 0.91895 0.90684 0.91118 0.90804 0.94095 0.92277 0.90544 0.91142 0.90558 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.29 37.16 0.35 -2.15 16 2 C 0.08 1.58 2.86 -27.86 -0.08 1.50 16 3 H 0.06 1.19 7.26 -51.93 -0.38 0.81 16 4 C 0.05 0.97 3.17 -4.57 -0.01 0.95 16 5 N -0.55 -11.22 4.21 -239.60 -1.01 -12.23 16 6 C 0.09 1.94 5.18 -3.83 -0.02 1.92 16 7 C 0.03 0.67 1.40 -155.66 -0.22 0.45 16 8 C -0.49 -12.71 6.90 -34.44 -0.24 -12.95 16 9 H 0.06 1.56 7.90 -52.48 -0.41 1.15 16 10 C 0.08 1.97 3.48 -17.82 -0.06 1.91 16 11 N -0.86 -22.72 11.07 55.43 0.61 -22.11 16 12 Si 0.87 19.76 28.80 -169.99 -4.89 14.87 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 16 C -0.20 -4.55 9.88 -26.72 -0.26 -4.82 16 17 C -0.22 -4.70 8.44 -26.72 -0.23 -4.93 16 18 C 0.06 0.99 4.13 -6.43 -0.03 0.97 16 19 C -0.15 -2.36 5.66 -27.14 -0.15 -2.52 16 20 C 0.07 1.06 6.27 36.02 0.23 1.28 16 21 O -0.40 -7.36 10.54 -35.23 -0.37 -7.73 16 22 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.05 1.12 6.42 -51.93 -0.33 0.79 16 26 H 0.11 2.56 3.81 -51.93 -0.20 2.37 16 27 H 0.04 0.78 7.57 -51.93 -0.39 0.39 16 28 H 0.12 3.14 5.38 -51.93 -0.28 2.86 16 29 H 0.27 6.67 8.32 -40.82 -0.34 6.33 16 30 H 0.06 1.34 8.09 -51.93 -0.42 0.92 16 31 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 32 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.07 1.46 5.83 -51.93 -0.30 1.15 16 34 H 0.04 0.78 4.23 -51.93 -0.22 0.56 16 35 H 0.06 1.02 7.78 -51.93 -0.40 0.61 16 36 H 0.08 1.22 7.25 -51.93 -0.38 0.85 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.80 6.62 -51.93 -0.34 0.46 16 LS Contribution 285.99 15.07 4.31 4.31 Total: -1.00 -25.95 285.99 -8.24 -34.18 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.15 Total: 7.08 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -0.73 Total: -18.37 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.40 Total: -34.34 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.37 Total: -7.73 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.89 Total: 14.87 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -25.95 -8.24 -34.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259490.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.643 kcal (2) G-P(sol) polarization free energy of solvation -25.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds