Wall clock time and date at job start Thu Apr 9 2020 12:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47415 * 2 1 4 4 H 1.09004 * 109.47300 * 55.81610 * 3 2 1 5 5 C 1.50701 * 109.47351 * 175.81758 * 3 2 1 6 6 H 1.07998 * 119.99911 * 119.99326 * 5 3 2 7 7 C 1.37878 * 120.00093 * 300.00297 * 5 3 2 8 8 N 1.31517 * 119.99679 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00155 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46944 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46809 * 119.99610 * 9 7 5 12 12 H 1.48499 * 109.46907 * 239.99789 * 9 7 5 13 13 N 1.46903 * 109.47067 * 295.81716 * 3 2 1 14 14 C 1.46846 * 110.99923 * 294.36910 * 13 3 2 15 15 C 1.53040 * 109.52411 * 174.15972 * 14 13 3 16 16 C 1.53118 * 109.31042 * 59.15862 * 15 14 13 17 17 C 1.53122 * 109.16033 * 302.40818 * 16 15 14 18 18 H 1.09005 * 109.49876 * 297.63463 * 17 16 15 19 19 C 1.50692 * 109.50427 * 177.55692 * 17 16 15 20 20 C 1.50700 * 120.00130 * 90.07607 * 19 17 16 21 21 O 1.20762 * 119.99915 * 270.07298 * 19 17 16 22 22 C 1.46846 * 111.00055 * 170.16204 * 13 3 2 23 23 H 1.09003 * 109.46845 * 59.99721 * 1 2 3 24 24 H 1.08998 * 109.47574 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46946 * 300.00375 * 1 2 3 26 26 H 1.09000 * 109.47341 * 239.99499 * 2 1 3 27 27 H 1.09003 * 109.46845 * 120.00279 * 2 1 3 28 28 H 0.97002 * 119.99852 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.46753 * 294.17496 * 14 13 3 30 30 H 1.09007 * 109.46489 * 54.15686 * 14 13 3 31 31 H 1.09002 * 109.50363 * 179.12393 * 15 14 13 32 32 H 1.09006 * 109.49807 * 299.19897 * 15 14 13 33 33 H 1.08996 * 109.55587 * 182.48197 * 16 15 14 34 34 H 1.08997 * 109.49108 * 62.29024 * 16 15 14 35 35 H 1.09001 * 109.46883 * 60.00176 * 20 19 17 36 36 H 1.08998 * 109.47308 * 299.99971 * 20 19 17 37 37 H 1.09005 * 109.46989 * 179.97438 * 20 19 17 38 38 H 1.08994 * 109.46407 * 65.82605 * 22 13 3 39 39 H 1.08995 * 109.45864 * 305.85152 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6168 1.9775 0.8501 5 6 3.5435 1.4437 0.1036 6 1 4.1383 1.8919 -0.6785 7 6 4.1597 0.8725 1.1968 8 7 3.4353 0.3270 2.1494 9 14 6.0233 0.8734 1.3249 10 1 6.6011 1.5433 0.1322 11 1 6.4347 1.6033 2.5510 12 1 6.5154 -0.5260 1.3932 13 7 1.6346 2.1052 -1.2468 14 6 2.2940 1.4924 -2.4070 15 6 1.7405 2.1080 -3.6941 16 6 1.9897 3.6187 -3.6808 17 6 1.3347 4.2252 -2.4368 18 1 0.2569 4.0682 -2.4799 19 6 1.6261 5.7028 -2.3844 20 6 0.6871 6.6799 -3.0435 21 8 2.6122 6.1038 -1.8141 22 6 1.9000 3.5482 -1.1861 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8687 -0.0745 2.9187 29 1 3.3677 1.6717 -2.3512 30 1 2.1046 0.4189 -2.4074 31 1 2.2412 1.6640 -4.5545 32 1 0.6693 1.9164 -3.7576 33 1 1.5581 4.0676 -4.5753 34 1 3.0625 3.8101 -3.6575 35 1 -0.3028 6.5907 -2.5960 36 1 0.6250 6.4614 -4.1096 37 1 1.0597 7.6943 -2.9013 38 1 2.9755 3.7179 -1.1361 39 1 1.4246 3.9679 -0.2996 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174697.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:57 Heat of formation + Delta-G solvation = -70.754307 kcal Electronic energy + Delta-G solvation = -18228.057633 eV Core-core repulsion = 15555.194148 eV Total energy + Delta-G solvation = -2672.863484 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05212 -39.34686 -36.33620 -33.94300 -32.47125 -32.17578 -30.37169 -28.46398 -25.67184 -24.76656 -23.73163 -21.85388 -20.64571 -20.05583 -18.29378 -17.36987 -16.65807 -16.37054 -16.10966 -15.81818 -15.29089 -14.99274 -14.93442 -14.43809 -14.13993 -13.79938 -13.47351 -13.18566 -13.11149 -12.95895 -12.90500 -12.75952 -12.54655 -12.22778 -12.15507 -11.88257 -11.63192 -11.54970 -11.39095 -11.11754 -10.93731 -10.48061 -10.31433 -8.96394 -8.07525 -6.29734 1.04342 1.29581 1.32484 1.42457 2.35309 3.02872 3.10919 3.57808 3.89162 3.92480 4.12974 4.37758 4.38218 4.54482 4.61584 4.67523 4.73567 4.76208 4.77295 4.89931 4.96345 4.98344 5.02614 5.09662 5.19417 5.20835 5.26207 5.35308 5.44058 5.49035 5.51846 5.63746 5.78720 6.06780 6.18142 6.35128 6.61884 6.67966 6.92048 7.40713 8.87268 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.008209 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.111472 B = 3409.866963 C = 3978.849187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.218 3.782 4 H -0.001 1.001 5 C -0.552 4.552 6 H 0.042 0.958 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.942 3.058 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.520 5.520 14 C 0.057 3.943 15 C -0.105 4.105 16 C -0.099 4.099 17 C -0.130 4.130 18 H 0.128 0.872 19 C 0.358 3.642 20 C -0.192 4.192 21 O -0.512 6.512 22 C 0.080 3.920 23 H 0.062 0.938 24 H 0.047 0.953 25 H 0.030 0.970 26 H 0.034 0.966 27 H 0.060 0.940 28 H 0.262 0.738 29 H 0.004 0.996 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.037 0.963 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.001 0.999 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.260 6.185 -13.204 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.017 0.983 5 C -0.591 4.591 6 H 0.060 0.940 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.244 5.244 14 C -0.072 4.072 15 C -0.142 4.142 16 C -0.136 4.136 17 C -0.150 4.150 18 H 0.146 0.854 19 C 0.237 3.763 20 C -0.248 4.248 21 O -0.389 6.389 22 C -0.049 4.049 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.022 0.978 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.056 0.944 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.095 0.905 38 H 0.019 0.981 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.240 6.232 -12.784 16.437 hybrid contribution 2.376 -0.062 1.066 2.605 sum -5.863 6.170 -11.718 14.483 Atomic orbital electron populations 1.21563 0.95858 0.99933 1.00850 1.21415 0.94838 0.97597 1.00375 1.19061 0.91409 0.91889 0.86570 0.98336 1.22006 0.94397 1.37221 1.05490 0.94024 1.25576 1.01722 0.95001 0.95488 1.69997 1.36103 1.38821 1.09884 0.85754 0.81756 0.77983 0.77646 1.20349 1.20722 1.19812 1.62383 1.56714 1.01508 1.03765 1.22020 0.95117 0.98938 0.91089 1.21583 1.02648 0.94240 0.95755 1.21460 0.99258 0.96462 0.96457 1.21865 1.04133 0.92803 0.96150 0.85438 1.25358 0.84045 0.92666 0.74267 1.22327 1.00454 0.98075 1.03984 1.90413 1.29281 1.82311 1.36858 1.21608 0.96914 0.89720 0.96688 0.91864 0.93412 0.95078 0.94718 0.92161 0.92843 0.97787 0.91646 0.89912 0.89521 0.87459 0.94446 0.86585 0.85926 0.90511 0.98072 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 9.79 71.98 0.70 -4.19 16 2 C -0.10 -4.98 5.14 30.59 0.16 -4.82 16 3 C 0.22 11.22 1.71 44.17 0.08 11.29 16 4 H 0.00 -0.08 7.99 -2.38 -0.02 -0.09 16 5 C -0.55 -31.45 7.23 25.60 0.19 -31.27 16 6 H 0.04 2.45 5.84 -2.91 -0.02 2.44 16 7 C 0.02 1.26 5.29 84.65 0.45 1.71 16 8 N -0.91 -53.34 11.30 21.45 0.24 -53.09 16 9 Si 0.94 45.77 29.54 68.60 2.03 47.80 16 10 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 12 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 13 N -0.52 -21.98 4.02 -875.50 -3.52 -25.51 16 14 C 0.06 2.17 4.78 86.33 0.41 2.58 16 15 C -0.10 -2.75 6.09 30.65 0.19 -2.57 16 16 C -0.10 -2.46 5.27 30.67 0.16 -2.30 16 17 C -0.13 -3.67 2.62 -11.49 -0.03 -3.70 16 18 H 0.13 2.87 8.12 -2.38 -0.02 2.85 16 19 C 0.36 9.80 6.33 29.10 0.18 9.98 16 20 C -0.19 -2.92 10.24 71.24 0.73 -2.19 16 21 O -0.51 -19.61 16.89 -1.46 -0.02 -19.63 16 22 C 0.08 3.28 4.08 86.33 0.35 3.63 16 23 H 0.06 2.28 7.73 -2.39 -0.02 2.26 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.03 1.61 6.25 -2.39 -0.01 1.60 16 27 H 0.06 3.29 5.97 -2.39 -0.01 3.27 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.00 0.17 6.38 -2.39 -0.02 0.16 16 30 H 0.07 2.55 6.13 -2.38 -0.01 2.53 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.99 8.14 -2.38 -0.02 1.98 16 33 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.23 8.12 -2.38 -0.02 1.21 16 38 H 0.00 0.05 6.97 -2.39 -0.02 0.03 16 39 H 0.04 1.89 8.02 -2.39 -0.02 1.87 16 Total: -1.00 -69.43 302.62 3.30 -66.13 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.01 Total: 6.13 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 3.57 Total: -21.83 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -3.28 Total: -78.60 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.02 Total: -19.63 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -69.43 3.30 -66.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174697.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.625 kcal (2) G-P(sol) polarization free energy of solvation -69.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds