Wall clock time and date at job start Thu Apr 9 2020 12:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47338 * 2 1 4 4 N 1.46498 * 109.47020 * 119.99599 * 2 1 3 5 5 C 1.46500 * 120.00377 * 300.00422 * 4 2 1 6 6 C 1.50700 * 109.46870 * 269.99803 * 5 4 2 7 7 H 1.07995 * 120.00403 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99856 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99870 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99935 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46879 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47182 * 119.99684 * 10 8 6 13 13 H 1.48500 * 109.46620 * 239.99907 * 10 8 6 14 14 C 1.34777 * 119.99898 * 120.00182 * 4 2 1 15 15 O 1.21287 * 120.00172 * 180.02562 * 14 4 2 16 16 C 1.50701 * 119.99848 * 359.97438 * 14 4 2 17 17 C 1.53005 * 109.47219 * 180.02562 * 16 14 4 18 18 H 1.09006 * 115.55762 * 29.31225 * 17 16 14 19 19 C 1.53069 * 117.51518 * 243.61113 * 17 16 14 20 20 C 1.52998 * 59.98494 * 252.52189 * 19 17 16 21 21 H 1.09000 * 117.49787 * 252.50138 * 20 19 17 22 22 C 1.52997 * 117.50113 * 107.49985 * 20 19 17 23 23 H 1.08999 * 109.47453 * 300.00668 * 1 2 3 24 24 H 1.09009 * 109.47035 * 59.99853 * 1 2 3 25 25 H 1.08993 * 109.47473 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47233 * 240.00079 * 2 1 3 27 27 H 1.09001 * 109.47413 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46962 * 300.00004 * 3 2 1 29 29 H 1.09000 * 109.46872 * 59.99315 * 3 2 1 30 30 H 1.09003 * 109.47188 * 29.99380 * 5 4 2 31 31 H 1.09002 * 109.47324 * 149.99659 * 5 4 2 32 32 H 0.97000 * 119.99949 * 179.97438 * 9 8 6 33 33 H 1.08993 * 109.47035 * 60.00425 * 16 14 4 34 34 H 1.08997 * 109.47242 * 300.00036 * 16 14 4 35 35 H 1.08997 * 117.49589 * 145.03335 * 19 17 16 36 36 H 1.08997 * 117.52865 * 359.97438 * 19 17 16 37 37 H 1.09002 * 109.47153 * 111.25331 * 22 20 19 38 38 H 1.09001 * 109.46832 * 351.25522 * 22 20 19 39 39 H 1.09004 * 109.47261 * 231.25504 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6643 -0.1900 2.5268 6 6 2.7030 0.8019 2.9830 7 1 3.5430 1.0358 2.3458 8 6 2.5810 1.4109 4.2141 9 7 1.5578 1.1265 4.9898 10 14 3.8681 2.6410 4.7793 11 1 4.9097 2.7847 3.7305 12 1 3.2232 3.9566 5.0206 13 1 4.4951 2.1589 6.0362 14 6 2.7931 -1.7863 1.0726 15 8 3.1971 -2.3583 2.0629 16 6 3.1567 -2.3016 -0.2961 17 6 4.0360 -3.5458 -0.1557 18 1 3.8678 -4.1417 0.7414 19 6 5.4674 -3.4645 -0.6920 20 6 4.4167 -4.2901 -1.4371 21 1 4.4986 -5.3757 -1.3831 22 6 3.8890 -3.7332 -2.7608 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 0.6903 0.2975 2.4844 31 1 1.6236 -1.0226 3.2292 32 1 1.4721 1.5546 5.8559 33 1 3.7015 -1.5310 -0.8414 34 1 2.2483 -2.5587 -0.8407 35 1 6.2403 -4.0068 -0.1475 36 1 5.7828 -2.5248 -1.1453 37 1 4.2378 -4.3584 -3.5828 38 1 4.2543 -2.7155 -2.8981 39 1 2.7991 -3.7290 -2.7446 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571459091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:58 Heat of formation + Delta-G solvation = -47.887694 kcal Electronic energy + Delta-G solvation = -17809.703931 eV Core-core repulsion = 15137.832018 eV Total energy + Delta-G solvation = -2671.871913 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94340 -38.73377 -37.42820 -34.94240 -32.39388 -31.33533 -29.34605 -28.45835 -27.92471 -24.94330 -22.86561 -22.32637 -20.64261 -19.30566 -18.60761 -18.24580 -17.02151 -16.62790 -16.08311 -15.85005 -14.84947 -14.76547 -14.58873 -14.42646 -14.02342 -13.76609 -13.41093 -13.33573 -13.20640 -12.88357 -12.82328 -12.73111 -12.55913 -12.36580 -12.20951 -12.10804 -12.04294 -11.59089 -11.47830 -10.77857 -10.72132 -10.61849 -10.43630 -9.38887 -8.19654 -6.31546 1.34346 1.36965 1.48256 1.89091 2.31628 2.45416 2.90781 3.09906 3.68598 3.77137 3.99650 4.02818 4.07503 4.31665 4.44646 4.49393 4.53502 4.64264 4.75674 4.87299 4.89575 4.96349 5.02942 5.04477 5.06693 5.09895 5.13754 5.25584 5.28443 5.35607 5.45370 5.52744 5.59401 5.65701 5.92261 6.12254 6.75378 6.88303 7.32431 7.55603 8.87919 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.025309 B = 0.006817 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.046147 B = 4106.345318 C = 4585.927438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.125 3.875 3 C -0.152 4.152 4 N -0.599 5.599 5 C 0.262 3.738 6 C -0.523 4.523 7 H 0.053 0.947 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.267 1.267 12 H -0.270 1.270 13 H -0.284 1.284 14 C 0.492 3.508 15 O -0.601 6.601 16 C -0.089 4.089 17 C -0.161 4.161 18 H 0.082 0.918 19 C -0.180 4.180 20 C -0.130 4.130 21 H 0.109 0.891 22 C -0.123 4.123 23 H 0.036 0.964 24 H 0.098 0.902 25 H 0.056 0.944 26 H 0.117 0.883 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.041 0.959 30 H 0.025 0.975 31 H -0.012 1.012 32 H 0.265 0.735 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 -4.371 -18.588 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 C -0.210 4.210 4 N -0.330 5.330 5 C 0.141 3.859 6 C -0.562 4.562 7 H 0.071 0.929 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.191 1.191 12 H -0.195 1.195 13 H -0.210 1.210 14 C 0.282 3.718 15 O -0.483 6.483 16 C -0.129 4.129 17 C -0.180 4.180 18 H 0.100 0.900 19 C -0.217 4.217 20 C -0.148 4.148 21 H 0.127 0.873 22 C -0.180 4.180 23 H 0.055 0.945 24 H 0.117 0.883 25 H 0.075 0.925 26 H 0.135 0.865 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.007 0.993 32 H 0.074 0.926 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.670 -4.593 -17.927 18.581 hybrid contribution 0.508 0.581 1.462 1.653 sum 2.178 -4.013 -16.465 17.086 Atomic orbital electron populations 1.22125 0.94354 1.02221 1.02762 1.21429 0.95175 0.93973 0.87213 1.22084 1.00576 0.95928 1.02418 1.48395 1.49359 1.27050 1.08213 1.18636 0.95245 0.92514 0.79507 1.21692 1.08865 1.23389 1.02270 0.92887 1.25821 0.97844 0.99173 0.96530 1.70062 1.31333 1.44695 1.11137 0.85450 0.79072 0.78752 0.78057 1.19124 1.19487 1.21047 1.21459 0.77734 0.80066 0.92564 1.90614 1.55407 1.59848 1.42429 1.21173 1.01899 0.97304 0.92505 1.22051 0.98070 0.99260 0.98571 0.89985 1.23245 0.91811 1.02642 1.03998 1.22518 1.01417 0.98392 0.92514 0.87258 1.21417 1.01426 1.01193 0.93956 0.94501 0.88341 0.92462 0.86485 0.93878 0.89053 0.93941 0.95685 0.99342 0.92638 0.87330 0.86394 0.89317 0.88024 0.90788 0.91922 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 9.17 71.98 0.66 -3.64 16 2 C 0.12 3.81 3.17 44.99 0.14 3.96 16 3 C -0.15 -4.77 8.47 71.98 0.61 -4.16 16 4 N -0.60 -25.72 2.39 -802.13 -1.91 -27.63 16 5 C 0.26 14.42 4.59 85.63 0.39 14.81 16 6 C -0.52 -30.43 7.83 25.60 0.20 -30.23 16 7 H 0.05 3.06 7.63 -2.91 -0.02 3.04 16 8 C 0.00 0.26 5.46 84.66 0.46 0.72 16 9 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 10 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 13 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 14 C 0.49 21.10 7.67 87.66 0.67 21.77 16 15 O -0.60 -32.57 15.14 -3.05 -0.05 -32.62 16 16 C -0.09 -2.54 3.37 29.85 0.10 -2.44 16 17 C -0.16 -4.60 5.42 -10.77 -0.06 -4.66 16 18 H 0.08 2.93 7.31 -2.38 -0.02 2.91 16 19 C -0.18 -4.33 9.83 30.62 0.30 -4.03 16 20 C -0.13 -2.62 6.40 -10.80 -0.07 -2.69 16 21 H 0.11 2.01 8.14 -2.39 -0.02 2.00 16 22 C -0.12 -1.79 9.19 71.98 0.66 -1.13 16 23 H 0.04 1.24 6.66 -2.39 -0.02 1.22 16 24 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 26 H 0.12 2.62 5.77 -2.39 -0.01 2.61 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.04 1.65 6.92 -2.39 -0.02 1.64 16 30 H 0.03 1.40 6.43 -2.39 -0.02 1.39 16 31 H -0.01 -0.74 7.42 -2.39 -0.02 -0.76 16 32 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.11 2.61 7.52 -2.39 -0.02 2.59 16 34 H 0.12 2.62 7.42 -2.39 -0.02 2.60 16 35 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.10 2.23 7.94 -2.39 -0.02 2.21 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.86 7.90 -2.39 -0.02 0.84 16 39 H 0.07 0.92 7.84 -2.38 -0.02 0.90 16 Total: -1.00 -75.11 314.31 5.43 -69.67 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.00 Total: 11.60 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 4.08 Total: -11.70 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -1.63 Total: -84.87 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.05 Total: -32.62 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -75.11 5.43 -69.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571459091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.787 kcal (2) G-P(sol) polarization free energy of solvation -75.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds