Wall clock time and date at job start Thu Apr 9 2020 12:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64412 * 2 1 4 4 C 1.55157 * 110.71787 * 123.34068 * 2 1 3 5 5 C 1.54913 * 101.58038 * 153.86386 * 4 2 1 6 6 N 1.47425 * 104.83172 * 322.98898 * 5 4 2 7 7 C 1.34779 * 125.64737 * 204.09940 * 6 5 4 8 8 O 1.21277 * 119.99983 * 180.02562 * 7 6 5 9 9 C 1.50695 * 120.00032 * 0.03088 * 7 6 5 10 10 C 1.52996 * 109.47271 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47409 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47172 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46988 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00247 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99618 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00421 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99609 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47395 * 60.00079 * 17 15 13 19 19 H 1.48503 * 109.47149 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46963 * 299.99746 * 17 15 13 21 21 C 1.47016 * 108.70144 * 24.12623 * 6 5 4 22 22 H 1.09001 * 109.46801 * 183.14101 * 1 2 3 23 23 H 1.09001 * 109.46998 * 303.13697 * 1 2 3 24 24 H 1.09000 * 109.47050 * 63.13989 * 1 2 3 25 25 H 1.09005 * 111.00262 * 271.93496 * 4 2 1 26 26 H 1.08993 * 111.01062 * 35.78843 * 4 2 1 27 27 H 1.08996 * 110.36871 * 204.14723 * 5 4 2 28 28 H 1.09002 * 110.46257 * 81.87178 * 5 4 2 29 29 H 1.09005 * 109.47513 * 300.01044 * 9 7 6 30 30 H 1.09000 * 109.47139 * 60.00364 * 9 7 6 31 31 H 1.08991 * 109.47459 * 300.00489 * 10 9 7 32 32 H 1.09004 * 109.47179 * 60.00456 * 10 9 7 33 33 H 1.09002 * 109.46948 * 300.00007 * 11 10 9 34 34 H 1.09004 * 109.46735 * 59.99992 * 11 10 9 35 35 H 1.08998 * 109.46955 * 300.00225 * 12 11 10 36 36 H 1.09004 * 109.47547 * 60.00183 * 12 11 10 37 37 H 0.96999 * 119.99979 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.88603 * 239.52323 * 21 6 5 39 39 H 1.09005 * 110.00815 * 118.43507 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0790 -0.7976 1.2124 5 6 3.4633 -1.2511 0.6853 6 7 3.2445 -1.5495 -0.7417 7 6 3.9922 -2.3812 -1.4939 8 8 3.7192 -2.5518 -2.6632 9 6 5.1674 -3.0991 -0.8820 10 6 5.8401 -3.9726 -1.9428 11 6 7.0329 -4.7021 -1.3214 12 6 7.7059 -5.5751 -2.3823 13 6 8.8804 -6.2940 -1.7701 14 1 9.1228 -6.1430 -0.7286 15 6 9.6454 -7.1446 -2.5397 16 7 9.3506 -7.3281 -3.8081 17 14 11.1008 -8.0363 -1.7806 18 1 10.6289 -8.8914 -0.6620 19 1 11.7542 -8.8836 -2.8104 20 1 12.0768 -7.0423 -1.2662 21 6 2.0760 -0.7892 -1.2086 22 1 -0.3633 -1.0261 0.0563 23 1 -0.3633 0.5618 0.8605 24 1 -0.3633 0.4643 -0.9168 25 1 2.1850 -0.1555 2.0868 26 1 1.4452 -1.6561 1.4346 27 1 3.7961 -2.1448 1.2131 28 1 4.1947 -0.4507 0.7976 29 1 5.8836 -2.3687 -0.5056 30 1 4.8222 -3.7262 -0.0600 31 1 5.1241 -4.7030 -2.3195 32 1 6.1854 -3.3452 -2.7645 33 1 7.7491 -3.9719 -0.9445 34 1 6.6872 -5.3296 -0.4998 35 1 6.9899 -6.3052 -2.7597 36 1 8.0517 -4.9473 -3.2036 37 1 9.8891 -7.9262 -4.3496 38 1 1.3129 -1.4731 -1.5801 39 1 2.3716 -0.0991 -1.9990 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588155519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:11 Heat of formation + Delta-G solvation = -69.581184 kcal Electronic energy + Delta-G solvation = -16650.642509 eV Core-core repulsion = 13977.829895 eV Total energy + Delta-G solvation = -2672.812614 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.13392 -37.82645 -34.85056 -33.22917 -32.51633 -29.90537 -29.75437 -27.02085 -25.20136 -23.36627 -22.04861 -20.57834 -19.96799 -19.13575 -16.94350 -16.67292 -16.10796 -15.55775 -14.96598 -14.39959 -14.28001 -13.90468 -13.71014 -13.14436 -13.01194 -12.63618 -12.54949 -12.17701 -12.00844 -11.66803 -11.58110 -11.33652 -11.14991 -11.01227 -10.93140 -10.51370 -10.48462 -10.36690 -9.75932 -9.57457 -9.19029 -8.96150 -8.73092 -8.27807 -5.92633 -3.95218 2.75647 2.93202 3.36973 3.41202 3.43503 4.09625 4.24997 4.44445 4.50918 4.82277 4.94415 4.97403 5.06243 5.25830 5.34743 5.36007 5.38478 5.41707 5.43015 5.52348 5.61465 5.71251 5.71866 5.87425 5.95386 6.17803 6.18727 6.36178 6.58838 6.87822 7.05414 7.23432 7.47001 7.76777 7.93446 8.09018 8.26602 8.50686 9.12385 9.68194 11.18721 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.066410 B = 0.003391 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.523811 B = 8254.424283 C = 8577.852623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.084 0.916 4 C -0.130 4.130 5 C 0.098 3.902 6 N -0.628 5.628 7 C 0.526 3.474 8 O -0.535 6.535 9 C -0.133 4.133 10 C -0.104 4.104 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.109 3.891 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.351 15.748 11.622 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.103 0.897 4 C -0.168 4.168 5 C -0.025 4.025 6 N -0.364 5.364 7 C 0.316 3.684 8 O -0.411 6.411 9 C -0.173 4.173 10 C -0.142 4.142 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.014 4.014 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.380 15.489 10.757 24.978 hybrid contribution 0.832 -0.461 0.410 1.036 sum -15.548 15.028 11.167 24.337 Atomic orbital electron populations 1.21755 0.93788 1.02302 1.02118 1.22236 0.96426 0.99372 0.94415 0.89743 1.22884 0.95847 1.00396 0.97653 1.22336 0.97622 1.01127 0.81387 1.48627 1.30685 1.45740 1.11350 1.20837 0.83465 0.77991 0.86058 1.90707 1.70609 1.63255 1.16516 1.21774 0.94845 0.99724 1.00936 1.21468 0.97977 0.98048 0.96702 1.21647 0.95019 0.98307 0.99758 1.19091 0.94906 0.94135 0.93573 1.21253 1.12577 1.25646 0.96444 0.92806 1.25042 0.97743 0.96907 0.94869 1.69963 1.39781 1.37490 1.06267 0.86671 0.82833 0.79711 0.78833 1.20287 1.21321 1.20292 1.21967 0.88147 0.94670 0.96574 0.92279 0.92126 0.92244 0.89802 0.90387 0.90203 0.91244 0.89255 0.89263 0.91805 0.91797 0.93490 0.93492 0.96591 0.96587 0.92988 0.91501 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.14 37.16 0.34 -0.46 16 2 C -0.11 -0.71 3.55 -88.78 -0.31 -1.03 16 3 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -0.80 6.53 -24.58 -0.16 -0.96 16 5 C 0.10 0.80 6.69 -2.53 -0.02 0.78 16 6 N -0.63 -7.48 3.33 -170.52 -0.57 -8.05 16 7 C 0.53 8.18 7.85 -10.99 -0.09 8.10 16 8 O -0.54 -10.59 16.31 5.56 0.09 -10.50 16 9 C -0.13 -1.92 4.71 -27.89 -0.13 -2.05 16 10 C -0.10 -1.95 4.50 -26.73 -0.12 -2.07 16 11 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 12 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 13 C -0.52 -15.23 9.11 -34.44 -0.31 -15.55 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.88 13.29 55.43 0.74 -27.14 16 17 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.11 1.12 6.46 -3.07 -0.02 1.10 16 22 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 23 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.49 8.02 -51.93 -0.42 0.08 16 27 H 0.08 0.59 7.48 -51.93 -0.39 0.20 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.12 7.85 -51.93 -0.41 0.71 16 31 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 32 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.07 0.74 7.82 -51.93 -0.41 0.33 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 318.98 15.07 4.81 4.81 Total: -1.00 -34.15 318.98 -8.22 -42.37 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -7.07 Total: -5.94 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -1.20 Total: -12.65 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.17 Total: -35.19 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.15 -8.22 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588155519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.209 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds