Wall clock time and date at job start Thu Apr 9 2020 12:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.51316 * 2 1 4 4 C 1.53101 * 109.51160 * 120.10326 * 2 1 3 5 5 N 1.47016 * 109.29196 * 177.17581 * 4 2 1 6 6 C 1.46899 * 110.99816 * 177.24986 * 5 4 2 7 7 C 1.50702 * 109.47505 * 66.05041 * 6 5 4 8 8 H 1.08002 * 119.99446 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00072 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99826 * 179.72119 * 9 7 6 11 11 Si 1.86800 * 120.00406 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46758 * 269.72576 * 11 9 7 13 13 H 1.48499 * 109.47026 * 29.72423 * 11 9 7 14 14 H 1.48496 * 109.47474 * 149.72459 * 11 9 7 15 15 C 1.47075 * 110.72163 * 301.00459 * 5 4 2 16 16 C 1.52734 * 109.32653 * 57.92504 * 15 5 4 17 17 C 1.53575 * 110.01613 * 65.91218 * 16 15 5 18 18 C 1.54343 * 106.49543 * 119.06163 * 17 16 15 19 19 C 1.54915 * 104.20120 * 23.56345 * 18 17 16 20 20 C 1.53987 * 109.76496 * 183.26158 * 16 15 5 21 21 O 1.42623 * 110.26533 * 304.33963 * 16 15 5 22 22 H 1.09007 * 109.46693 * 299.89922 * 1 2 3 23 23 H 1.09005 * 109.47072 * 59.89281 * 1 2 3 24 24 H 1.08998 * 109.47570 * 179.90178 * 1 2 3 25 25 H 1.09004 * 109.49931 * 57.23189 * 4 2 1 26 26 H 1.09000 * 109.53602 * 297.14294 * 4 2 1 27 27 H 1.09000 * 109.47652 * 306.04573 * 6 5 4 28 28 H 1.09001 * 109.46945 * 186.04653 * 6 5 4 29 29 H 0.96999 * 120.00128 * 180.27192 * 10 9 7 30 30 H 1.08997 * 109.48955 * 177.88077 * 15 5 4 31 31 H 1.09003 * 109.49073 * 297.97004 * 15 5 4 32 32 H 1.09000 * 110.05463 * 238.32124 * 17 16 15 33 33 H 1.09009 * 110.05007 * 359.80105 * 17 16 15 34 34 H 1.08998 * 110.48418 * 264.88373 * 18 17 16 35 35 H 1.08996 * 110.48528 * 142.24400 * 18 17 16 36 36 H 1.09003 * 110.75066 * 203.89732 * 19 18 17 37 37 H 1.08996 * 110.90586 * 80.61174 * 19 18 17 38 38 H 1.08994 * 110.50071 * 335.93036 * 20 16 15 39 39 H 1.09004 * 110.49551 * 98.60590 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0413 -0.7238 1.2485 5 7 3.5099 -0.7804 1.2098 6 6 4.0446 -1.4109 2.4241 7 6 3.6309 -2.8596 2.4618 8 1 3.0305 -3.2706 1.6636 9 6 4.0181 -3.6599 3.5156 10 7 3.6525 -4.9227 3.5512 11 14 5.0560 -2.9488 4.8964 12 1 6.4951 -3.1174 4.5710 13 1 4.7497 -1.5041 5.0523 14 1 4.7484 -3.6595 6.1634 15 6 3.9720 -1.4836 0.0035 16 6 3.4292 -0.7732 -1.2348 17 6 4.0466 0.6282 -1.3499 18 6 4.8162 0.6597 -2.6873 19 6 4.1377 -0.4397 -3.5422 20 6 3.8390 -1.5478 -2.5011 21 8 2.0078 -0.6774 -1.1661 22 1 -0.3633 0.5123 0.8910 23 1 -0.3633 0.5155 -0.8891 24 1 -0.3634 -1.0276 -0.0018 25 1 1.6387 -1.7365 1.2725 26 1 1.7214 -0.1838 2.1396 27 1 3.6527 -0.8982 3.3025 28 1 5.1325 -1.3438 2.4194 29 1 3.9215 -5.4847 4.2946 30 1 5.0616 -1.4811 -0.0240 31 1 3.6104 -2.5118 0.0209 32 1 3.2608 1.3837 -1.3530 33 1 4.7314 0.8042 -0.5202 34 1 5.8683 0.4237 -2.5276 35 1 4.7111 1.6336 -3.1652 36 1 4.8180 -0.8058 -4.3112 37 1 3.2146 -0.0706 -3.9890 38 1 4.7313 -2.1443 -2.3116 39 1 3.0204 -2.1816 -2.8424 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592186606.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:40 Heat of formation + Delta-G solvation = -53.849930 kcal Electronic energy + Delta-G solvation = -18453.229046 eV Core-core repulsion = 15781.098591 eV Total energy + Delta-G solvation = -2672.130455 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.93945 -36.44585 -35.19112 -32.34977 -31.75742 -28.89460 -28.57055 -27.19415 -25.13792 -23.54143 -21.47772 -20.72256 -20.09807 -18.44155 -16.97001 -16.28713 -15.54287 -15.04309 -14.79775 -14.41479 -13.84012 -13.52500 -13.21787 -12.94774 -12.66025 -12.25082 -12.11513 -12.00525 -11.65567 -11.18631 -11.07126 -10.97765 -10.91952 -10.86512 -10.77463 -10.44470 -10.34373 -10.22437 -10.00798 -9.77681 -9.51001 -8.85415 -8.62228 -7.25640 -6.12860 -4.13169 3.25137 3.32928 3.36356 4.07606 4.36826 4.69723 4.85231 4.96091 5.10395 5.20570 5.38907 5.50326 5.57198 5.61883 5.70930 5.78055 5.85988 5.87668 5.92340 6.05971 6.08869 6.12739 6.19822 6.25379 6.31155 6.37338 6.49217 6.52835 6.61991 6.72619 6.83232 6.89158 7.02041 7.51622 7.78611 7.97449 8.01087 8.41764 8.89622 9.49427 10.99992 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.027333 B = 0.007572 C = 0.006841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.159539 B = 3696.718820 C = 4092.051288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.087 3.913 3 H 0.058 0.942 4 C 0.031 3.969 5 N -0.532 5.532 6 C 0.153 3.847 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.072 3.928 10 N -0.898 5.898 11 Si 0.879 3.121 12 H -0.276 1.276 13 H -0.264 1.264 14 H -0.287 1.287 15 C 0.041 3.959 16 C 0.119 3.881 17 C -0.138 4.138 18 C -0.123 4.123 19 C -0.121 4.121 20 C -0.111 4.111 21 O -0.376 6.376 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.029 0.971 28 H 0.026 0.974 29 H 0.264 0.736 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 10.680 -10.085 14.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.076 0.924 4 C -0.098 4.098 5 N -0.255 5.255 6 C 0.026 3.974 7 C -0.591 4.591 8 H 0.093 0.907 9 C -0.130 4.130 10 N -0.536 5.536 11 Si 0.706 3.294 12 H -0.202 1.202 13 H -0.189 1.189 14 H -0.213 1.213 15 C -0.088 4.088 16 C 0.079 3.921 17 C -0.175 4.175 18 C -0.161 4.161 19 C -0.159 4.159 20 C -0.149 4.149 21 O -0.295 6.295 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.667 10.927 -10.113 14.904 hybrid contribution 0.416 -0.644 1.209 1.432 sum -0.251 10.283 -8.904 13.605 Atomic orbital electron populations 1.21720 0.93695 1.02779 1.01725 1.22156 0.93959 0.95508 0.85422 0.92375 1.22594 0.89881 1.00426 0.96927 1.62692 1.07584 1.51925 1.03296 1.20195 0.95300 0.93730 0.88129 1.21687 1.34544 0.94079 1.08761 0.90657 1.24971 0.95521 0.94620 0.97919 1.69931 1.45848 1.05913 1.31925 0.86798 0.80956 0.79845 0.81813 1.20182 1.18862 1.21262 1.22555 0.99804 0.97221 0.89227 1.21964 0.80854 0.94351 0.94937 1.22649 1.00066 0.97169 0.97646 1.22358 0.99343 0.98498 0.95885 1.22482 1.00204 0.95973 0.97235 1.22318 1.01503 0.97511 0.93572 1.87879 1.20707 1.78379 1.42570 0.91323 0.92355 0.91906 0.92937 0.91060 0.95298 0.95641 0.92659 0.90921 0.92664 0.91638 0.90305 0.91765 0.92159 0.91876 0.91548 0.90271 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.57 37.16 0.36 -1.61 16 2 C 0.09 1.46 3.10 -26.68 -0.08 1.38 16 3 H 0.06 0.93 6.68 -51.93 -0.35 0.59 16 4 C 0.03 0.60 4.65 -3.71 -0.02 0.59 16 5 N -0.53 -11.22 4.60 -235.92 -1.08 -12.31 16 6 C 0.15 3.70 4.22 -4.98 -0.02 3.68 16 7 C -0.55 -15.44 8.22 -34.44 -0.28 -15.72 16 8 H 0.08 2.31 6.03 -52.49 -0.32 2.00 16 9 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 10 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 11 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 C 0.04 0.81 3.58 -3.86 -0.01 0.80 16 16 C 0.12 1.99 0.96 -89.94 -0.09 1.91 16 17 C -0.14 -2.03 5.49 -25.73 -0.14 -2.17 16 18 C -0.12 -1.50 6.84 -25.02 -0.17 -1.67 16 19 C -0.12 -1.47 6.91 -24.69 -0.17 -1.64 16 20 C -0.11 -1.62 6.08 -25.18 -0.15 -1.77 16 21 O -0.38 -6.75 9.84 -35.23 -0.35 -7.10 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 1.19 6.94 -51.93 -0.36 0.83 16 26 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 27 H 0.03 0.71 7.16 -51.93 -0.37 0.34 16 28 H 0.03 0.62 7.57 -51.93 -0.39 0.22 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.06 1.28 6.39 -51.93 -0.33 0.95 16 32 H 0.06 0.96 6.69 -51.93 -0.35 0.62 16 33 H 0.08 1.24 7.55 -51.92 -0.39 0.85 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.11 7.84 -51.93 -0.41 0.70 16 39 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 LS Contribution 294.17 15.07 4.43 4.43 Total: -1.00 -30.00 294.17 -8.43 -38.43 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.66 Total: 0.70 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -0.88 Total: -14.26 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.31 Total: -38.95 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.35 Total: -7.10 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.00 -8.43 -38.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592186606.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.419 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds