Wall clock time and date at job start Thu Apr 9 2020 12:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46478 * 2 1 4 4 C 1.53005 * 109.47212 * 119.99903 * 2 1 3 5 5 C 1.50695 * 109.47149 * 295.00317 * 4 2 1 6 6 H 1.08001 * 120.00008 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00092 * 180.27698 * 5 4 2 8 8 N 1.31517 * 120.00276 * 179.72465 * 7 5 4 9 9 Si 1.86800 * 119.99613 * 359.72055 * 7 5 4 10 10 H 1.48496 * 109.46939 * 90.00372 * 9 7 5 11 11 H 1.48503 * 109.46989 * 210.00238 * 9 7 5 12 12 H 1.48494 * 109.47293 * 329.99876 * 9 7 5 13 13 C 1.52994 * 109.47055 * 240.00065 * 2 1 3 14 14 N 1.46905 * 109.47195 * 65.33353 * 13 2 1 15 15 C 1.48563 * 111.00027 * 75.60200 * 14 13 2 16 16 C 1.54373 * 104.59295 * 159.04260 * 15 14 13 17 17 H 1.08994 * 117.60768 * 115.28388 * 16 15 14 18 18 C 1.53008 * 118.12613 * 270.80055 * 16 15 14 19 19 H 1.08994 * 117.44422 * 344.02924 * 18 16 15 20 20 C 1.52998 * 117.44338 * 199.31234 * 18 16 15 21 21 O 1.42901 * 109.47009 * 175.00055 * 20 18 16 22 22 C 1.54265 * 105.06109 * 336.14404 * 16 15 14 23 23 H 1.09000 * 121.78426 * 137.87112 * 22 16 15 24 24 C 1.48557 * 111.00040 * 191.02080 * 14 13 2 25 25 H 1.08997 * 109.47160 * 65.01552 * 1 2 3 26 26 H 1.09000 * 109.46800 * 185.01730 * 1 2 3 27 27 H 1.09003 * 109.47188 * 305.01089 * 1 2 3 28 28 H 1.08995 * 109.46790 * 175.00330 * 4 2 1 29 29 H 1.09000 * 109.46877 * 55.00216 * 4 2 1 30 30 H 0.96995 * 119.99633 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47105 * 185.33068 * 13 2 1 32 32 H 1.09003 * 109.47367 * 305.33193 * 13 2 1 33 33 H 1.08998 * 110.41262 * 277.82326 * 15 14 13 34 34 H 1.09003 * 110.40884 * 40.26130 * 15 14 13 35 35 H 1.08999 * 109.47907 * 295.00693 * 20 18 16 36 36 H 1.09005 * 109.46808 * 55.00810 * 20 18 16 37 37 H 0.96700 * 113.99625 * 180.02562 * 21 20 18 38 38 H 1.09002 * 110.41535 * 319.74064 * 24 14 13 39 39 H 1.09001 * 110.41172 * 82.18260 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9978 -0.3990 3.7280 8 7 1.6545 0.2830 4.7988 9 14 2.9681 -1.9856 3.9025 10 1 4.4216 -1.6828 3.8716 11 1 2.6253 -2.6362 5.1926 12 1 2.6288 -2.8991 2.7820 13 6 2.0400 -0.7212 -1.2492 14 7 1.6583 0.0416 -2.4452 15 6 2.5173 1.2429 -2.6072 16 6 2.3886 1.6147 -4.0999 17 1 1.9200 2.5679 -4.3444 18 6 3.3703 0.9816 -5.0882 19 1 4.2671 0.5176 -4.6778 20 6 3.5450 1.6665 -6.4451 21 8 4.5769 1.0075 -7.1819 22 6 1.9820 0.3046 -4.8057 23 1 1.2206 0.2850 -5.5854 24 6 1.8991 -0.7485 -3.6800 25 1 -0.3633 0.4340 -0.9315 26 1 -0.3633 -1.0237 0.0899 27 1 -0.3634 0.5896 0.8417 28 1 3.1263 -0.7994 1.2056 29 1 1.6055 -1.7198 1.2952 30 1 1.9049 -0.0381 5.6792 31 1 3.1258 -0.8046 -1.2028 32 1 1.6008 -1.7176 -1.2983 33 1 2.1545 2.0571 -1.9799 34 1 3.5526 1.0056 -2.3623 35 1 2.6097 1.6130 -7.0023 36 1 3.8178 2.7108 -6.2925 37 1 4.7426 1.3899 -8.0545 38 1 2.8377 -1.2974 -3.6031 39 1 1.0708 -1.4335 -3.8606 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602671416.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:55 Heat of formation + Delta-G solvation = -48.366727 kcal Electronic energy + Delta-G solvation = -17098.454940 eV Core-core repulsion = 14426.562255 eV Total energy + Delta-G solvation = -2671.892686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.95770 -38.09870 -37.14545 -35.00501 -33.69332 -29.80436 -29.38965 -28.55978 -26.57961 -24.58023 -22.51026 -21.47362 -21.35806 -20.29198 -18.92122 -18.23661 -17.20261 -16.47237 -16.10188 -15.73066 -15.49817 -15.25056 -14.90526 -14.69883 -14.25159 -13.81686 -13.60736 -13.48434 -13.30466 -12.82991 -12.73891 -12.43880 -12.24783 -12.10273 -12.01013 -11.79837 -11.41845 -11.33033 -11.24195 -11.03981 -10.97890 -10.74331 -10.45803 -9.39905 -8.26816 -6.29217 1.34788 1.36646 1.48590 2.36945 2.46168 2.83241 3.08223 3.24923 3.60021 3.79169 4.00879 4.13636 4.18680 4.22246 4.33049 4.35796 4.46208 4.48475 4.54482 4.65763 4.70052 4.79129 4.83405 4.91008 4.92537 5.06065 5.09134 5.19705 5.27717 5.37238 5.41094 5.53368 5.64859 5.71737 5.90444 6.04318 6.34531 6.78234 6.92838 7.34290 8.90067 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.044179 B = 0.004312 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.633489 B = 6492.004670 C = 6637.267283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.064 4.064 3 H 0.046 0.954 4 C -0.007 4.007 5 C -0.518 4.518 6 H 0.034 0.966 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.948 3.052 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.247 1.247 13 C 0.058 3.942 14 N -0.512 5.512 15 C 0.055 3.945 16 C -0.145 4.145 17 H 0.132 0.868 18 C -0.127 4.127 19 H 0.090 0.910 20 C 0.112 3.888 21 O -0.595 6.595 22 C -0.154 4.154 23 H 0.137 0.863 24 C 0.056 3.944 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.026 0.974 28 H 0.011 0.989 29 H 0.019 0.981 30 H 0.265 0.735 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.400 0.600 38 H 0.039 0.961 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.969 0.232 -24.966 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.083 4.083 3 H 0.065 0.935 4 C -0.045 4.045 5 C -0.556 4.556 6 H 0.052 0.948 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.171 1.171 13 C -0.070 4.070 14 N -0.235 5.235 15 C -0.073 4.073 16 C -0.164 4.164 17 H 0.150 0.850 18 C -0.146 4.146 19 H 0.108 0.892 20 C 0.034 3.966 21 O -0.404 6.404 22 C -0.172 4.172 23 H 0.155 0.845 24 C -0.071 4.071 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.251 0.749 38 H 0.058 0.942 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.412 -0.008 -24.168 24.288 hybrid contribution 1.167 -0.218 0.513 1.293 sum 3.579 -0.227 -23.655 23.925 Atomic orbital electron populations 1.21476 0.94892 1.00579 1.00176 1.20821 0.96578 0.98288 0.92634 0.93536 1.19583 0.95542 0.95991 0.93343 1.21432 1.34302 1.08677 0.91231 0.94770 1.25999 0.97047 1.00915 0.95504 1.70072 1.49138 1.41544 0.98745 0.85692 0.79123 0.79966 0.78070 1.19397 1.21013 1.17078 1.22262 0.97528 0.97410 0.89807 1.65520 1.50544 1.05774 1.01691 1.22686 0.95026 0.94332 0.95215 1.23439 1.03435 0.98521 0.91016 0.85016 1.23005 0.92977 1.02446 0.96183 0.89223 1.21598 0.90827 0.94664 0.89484 1.86428 1.57842 1.61169 1.34959 1.24299 0.98370 0.94124 1.00437 0.84548 1.22671 1.00678 0.95430 0.88330 0.91539 0.93754 0.95455 0.97019 0.96233 0.92644 0.95119 0.90408 0.90220 0.94513 0.91534 0.91657 0.74907 0.94225 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.46 8.87 71.98 0.64 -3.82 16 2 C -0.06 -2.59 2.40 -10.79 -0.03 -2.61 16 3 H 0.05 1.98 7.32 -2.39 -0.02 1.97 16 4 C -0.01 -0.32 3.52 29.85 0.10 -0.22 16 5 C -0.52 -30.43 9.02 25.60 0.23 -30.20 16 6 H 0.03 2.21 7.30 -2.91 -0.02 2.19 16 7 C 0.00 0.09 5.47 84.65 0.46 0.55 16 8 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 9 Si 0.95 45.29 27.46 68.60 1.88 47.17 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.25 -10.97 6.55 99.48 0.65 -10.32 16 13 C 0.06 1.89 4.22 86.30 0.36 2.26 16 14 N -0.51 -14.45 4.72 -881.51 -4.16 -18.61 16 15 C 0.06 1.46 5.74 86.45 0.50 1.96 16 16 C -0.15 -2.94 6.70 -9.90 -0.07 -3.01 16 17 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 18 C -0.13 -2.44 5.81 -9.38 -0.05 -2.50 16 19 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 20 C 0.11 1.55 7.33 71.98 0.53 2.08 16 21 O -0.59 -9.31 13.66 -148.98 -2.04 -11.35 16 22 C -0.15 -2.98 6.90 -8.49 -0.06 -3.03 16 23 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 24 C 0.06 1.30 6.28 86.45 0.54 1.84 16 25 H 0.07 2.31 7.63 -2.39 -0.02 2.29 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.03 1.19 7.10 -2.39 -0.02 1.18 16 28 H 0.01 0.54 7.56 -2.39 -0.02 0.52 16 29 H 0.02 0.92 7.21 -2.39 -0.02 0.90 16 30 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.03 1.00 7.74 -2.39 -0.02 0.99 16 32 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 33 H 0.08 2.25 7.75 -2.39 -0.02 2.23 16 34 H 0.04 1.03 7.73 -2.39 -0.02 1.01 16 35 H 0.07 0.70 7.95 -2.39 -0.02 0.68 16 36 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.40 2.17 9.12 -74.06 -0.68 1.49 16 38 H 0.04 0.95 8.00 -2.39 -0.02 0.93 16 39 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -69.70 310.47 -0.57 -70.27 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.28 Total: 9.97 kcal Atomic # 6 Polarization: -39.87 SS G_CDS: 3.16 Total: -36.71 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -3.86 Total: -79.36 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -2.04 Total: -11.35 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Total: -69.70 -0.57 -70.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671416.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.904 kcal (2) G-P(sol) polarization free energy of solvation -69.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds