Wall clock time and date at job start Thu Apr 9 2020 12:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47069 * 2 1 4 4 C 1.46906 * 111.00073 * 70.53670 * 3 2 1 5 5 C 1.50696 * 109.46915 * 66.04475 * 4 3 2 6 6 H 1.07997 * 120.00403 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99836 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00168 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00179 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47103 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47055 * 119.99366 * 9 7 5 12 12 H 1.48496 * 109.47447 * 239.99765 * 9 7 5 13 13 C 1.46898 * 111.00324 * 306.58465 * 3 2 1 14 14 C 1.53002 * 109.47091 * 287.33744 * 13 3 2 15 15 H 1.09003 * 115.55763 * 281.11148 * 14 13 3 16 16 C 1.53181 * 117.52680 * 66.88143 * 14 13 3 17 17 C 1.52105 * 117.56835 * 135.26911 * 14 13 3 18 18 C 1.53708 * 121.73649 * 3.69280 * 17 14 13 19 19 C 1.54695 * 103.69238 * 143.47274 * 18 17 14 20 20 O 1.44498 * 104.87219 * 23.84191 * 19 18 17 21 21 C 1.44632 * 105.46256 * 320.02547 * 20 19 18 22 22 H 1.08991 * 109.47279 * 309.10792 * 1 2 3 23 23 H 1.09003 * 109.46838 * 69.11066 * 1 2 3 24 24 H 1.09002 * 109.46841 * 189.10536 * 1 2 3 25 25 H 1.08996 * 109.47102 * 240.00047 * 2 1 3 26 26 H 1.08998 * 109.47085 * 119.99983 * 2 1 3 27 27 H 1.08995 * 109.46946 * 186.05072 * 4 3 2 28 28 H 1.09011 * 109.46762 * 306.04679 * 4 3 2 29 29 H 0.96996 * 120.00798 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47863 * 167.33314 * 13 3 2 31 31 H 1.09005 * 109.47075 * 47.33275 * 13 3 2 32 32 H 1.08994 * 117.52494 * 214.90191 * 16 14 13 33 33 H 1.09004 * 117.51593 * 0.02562 * 16 14 13 34 34 H 1.09006 * 110.57842 * 262.02039 * 18 17 14 35 35 H 1.08997 * 110.58147 * 24.91467 * 18 17 14 36 36 H 1.08998 * 110.36271 * 142.69796 * 19 18 17 37 37 H 1.09006 * 110.35880 * 264.99822 * 19 18 17 38 38 H 1.08999 * 110.41982 * 280.87518 * 21 20 19 39 39 H 1.09005 * 110.41754 * 158.41857 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7643 2.0337 1.2931 5 6 2.5867 1.3626 2.3628 6 1 3.2347 0.5371 2.1076 7 6 2.5120 1.8025 3.6674 8 7 1.7235 2.8080 3.9781 9 14 3.5320 0.9712 4.9933 10 1 4.3308 -0.1251 4.3888 11 1 4.4445 1.9658 5.6123 12 1 2.6313 0.4115 6.0328 13 6 1.4246 2.1538 -1.1012 14 6 2.0400 1.7044 -2.4279 15 1 3.0274 2.1096 -2.6494 16 6 1.7367 0.2799 -2.9026 17 6 1.0970 1.4718 -3.5984 18 6 -0.4097 1.7567 -3.4918 19 6 -0.7780 2.3076 -4.8896 20 8 0.2367 1.7827 -5.7744 21 6 1.4761 1.8689 -5.0338 22 1 -0.3633 0.6482 0.7974 23 1 -0.3633 0.3664 -0.9602 24 1 -0.3633 -1.0147 0.1626 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0379 3.0869 1.2315 28 1 0.7062 1.9470 1.5404 29 1 1.6711 3.1178 4.8958 30 1 1.6206 3.2154 -0.9508 31 1 0.3482 1.9828 -1.1236 32 1 2.5246 -0.2516 -3.4362 33 1 1.0984 -0.3366 -2.2696 34 1 -0.9595 0.8385 -3.2848 35 1 -0.6050 2.5032 -2.7220 36 1 -1.7637 1.9522 -5.1898 37 1 -0.7516 3.3974 -4.8868 38 1 1.8629 2.8877 -5.0570 39 1 2.2106 1.1731 -5.4395 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886030607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:31 Heat of formation + Delta-G solvation = -12.903933 kcal Electronic energy + Delta-G solvation = -17779.243056 eV Core-core repulsion = 15108.888153 eV Total energy + Delta-G solvation = -2670.354904 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.07353 -37.70730 -35.34018 -32.53809 -30.36243 -29.76072 -28.22893 -26.68329 -25.00190 -23.01376 -22.77969 -21.07480 -19.67474 -18.49259 -16.31371 -16.17151 -16.15026 -15.21127 -15.18317 -14.66728 -14.36513 -13.79489 -13.39509 -12.98950 -12.78195 -12.56046 -12.33753 -11.81578 -11.52500 -11.37076 -11.31999 -11.05805 -10.93164 -10.90967 -10.62109 -10.42068 -10.09333 -9.96184 -9.86970 -9.70116 -9.34064 -9.05595 -8.43243 -7.13116 -6.02266 -4.02853 3.30787 3.38362 3.43156 3.69733 4.01522 4.38706 4.45409 4.73912 4.87199 5.00271 5.09325 5.22589 5.33913 5.46859 5.53926 5.57283 5.64502 5.70891 5.74723 5.80113 5.88896 5.91808 5.97413 6.00824 6.12987 6.19719 6.34476 6.41804 6.56101 6.66441 6.71048 6.92208 7.33394 7.42227 7.82447 8.12181 8.25167 8.58545 9.05385 9.61214 11.08642 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.050746 B = 0.004993 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.635165 B = 5606.846870 C = 5657.880526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.048 3.952 3 N -0.530 5.530 4 C 0.189 3.811 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.286 1.286 13 C 0.074 3.926 14 C -0.108 4.108 15 H 0.105 0.895 16 C -0.161 4.161 17 C -0.170 4.170 18 C -0.120 4.120 19 C 0.048 3.952 20 O -0.379 6.379 21 C 0.084 3.916 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.027 0.973 28 H -0.005 1.005 29 H 0.260 0.740 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.468 -2.412 -14.780 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.080 4.080 3 N -0.253 5.253 4 C 0.064 3.936 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.212 1.212 13 C -0.055 4.055 14 C -0.127 4.127 15 H 0.123 0.877 16 C -0.198 4.198 17 C -0.171 4.171 18 C -0.158 4.158 19 C -0.029 4.029 20 O -0.297 6.297 21 C 0.007 3.993 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.045 0.955 28 H 0.013 0.987 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.037 -2.382 -14.905 15.396 hybrid contribution -0.368 -0.212 1.246 1.316 sum -3.405 -2.594 -13.659 14.314 Atomic orbital electron populations 1.22438 0.99900 1.01381 1.01184 1.22278 0.91626 0.91990 1.02115 1.62213 1.57127 1.01486 1.04479 1.19777 0.95224 0.94598 0.83973 1.21204 1.24603 1.16687 0.91707 0.91857 1.24980 0.95742 0.95235 0.98686 1.69962 1.38575 1.26509 1.18934 0.86472 0.80063 0.79449 0.81628 1.19663 1.21045 1.21182 1.21676 0.96111 0.98046 0.89631 1.22235 0.98540 0.98698 0.93206 0.87654 1.23243 1.02831 0.91362 1.02349 1.22296 0.94541 1.05916 0.94342 1.22389 0.93725 1.01928 0.97748 1.23415 0.92562 0.98002 0.88905 1.89120 1.17401 1.84563 1.38659 1.22778 0.87247 1.00708 0.88573 0.91866 0.93552 0.93348 0.91603 0.90169 0.95491 0.98743 0.93044 0.91343 0.94539 0.89000 0.87450 0.90685 0.89953 0.89342 0.92301 0.91912 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 8.53 37.16 0.32 -2.94 16 2 C 0.05 0.91 5.32 -3.82 -0.02 0.89 16 3 N -0.53 -11.10 4.65 -236.07 -1.10 -12.20 16 4 C 0.19 4.85 4.60 -4.97 -0.02 4.82 16 5 C -0.50 -14.01 8.36 -34.44 -0.29 -14.30 16 6 H 0.06 1.76 7.19 -52.49 -0.38 1.38 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 9 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.07 1.28 4.81 -3.82 -0.02 1.26 16 14 C -0.11 -1.56 5.88 -90.98 -0.53 -2.09 16 15 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 16 C -0.16 -2.12 8.37 -27.09 -0.23 -2.35 16 17 C -0.17 -2.13 2.50 -154.69 -0.39 -2.52 16 18 C -0.12 -1.42 6.10 -25.47 -0.16 -1.57 16 19 C 0.05 0.52 7.65 38.05 0.29 0.81 16 20 O -0.38 -4.91 11.65 -35.23 -0.41 -5.32 16 21 C 0.08 0.97 7.44 37.51 0.28 1.25 16 22 H 0.06 1.25 6.31 -51.93 -0.33 0.92 16 23 H 0.05 0.71 5.82 -51.93 -0.30 0.41 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.10 4.83 -51.93 -0.25 0.85 16 26 H 0.08 1.69 6.64 -51.93 -0.34 1.35 16 27 H 0.03 0.75 7.85 -51.93 -0.41 0.34 16 28 H -0.01 -0.14 6.29 -51.92 -0.33 -0.47 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.07 1.23 7.80 -51.93 -0.40 0.83 16 31 H 0.04 0.62 3.81 -51.93 -0.20 0.42 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.11 1.48 4.66 -51.93 -0.24 1.24 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.99 6.74 -51.93 -0.35 0.64 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.94 8.12 -51.93 -0.42 0.52 16 LS Contribution 296.85 15.07 4.47 4.47 Total: -1.00 -29.63 296.85 -8.23 -37.86 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.05 Total: -0.19 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -0.86 Total: -15.30 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.36 Total: -38.09 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.41 Total: -5.32 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.63 -8.23 -37.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886030607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.956 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds