Wall clock time and date at job start Thu Apr 9 2020 12:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46997 * 2 1 4 4 N 1.46499 * 109.46736 * 239.99854 * 2 1 3 5 5 C 1.37482 * 119.99945 * 85.00162 * 4 2 1 6 6 N 1.30334 * 120.00034 * 359.97438 * 5 4 2 7 7 N 1.37481 * 119.99596 * 179.97438 * 5 4 2 8 8 C 1.46507 * 119.99700 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46982 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.47245 * 179.97438 * 9 8 7 11 11 C 1.50693 * 109.47647 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99790 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00447 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00160 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99516 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46839 * 90.00650 * 15 13 11 17 17 H 1.48504 * 109.46604 * 209.99911 * 15 13 11 18 18 H 1.48495 * 109.47488 * 330.00220 * 15 13 11 19 19 C 1.53001 * 109.47016 * 119.99845 * 2 1 3 20 20 C 1.53000 * 117.50223 * 299.99980 * 19 2 1 21 21 C 1.52997 * 117.49889 * 231.37242 * 19 2 1 22 22 H 1.09007 * 109.47169 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47267 * 300.00032 * 1 2 3 24 24 H 1.08997 * 109.47409 * 59.99734 * 1 2 3 25 25 H 0.97005 * 120.00208 * 264.99542 * 4 2 1 26 26 H 0.97004 * 120.00200 * 179.97438 * 6 5 4 27 27 H 0.96996 * 120.00774 * 359.97438 * 7 5 4 28 28 H 1.09000 * 109.47196 * 299.99925 * 8 7 5 29 29 H 1.09006 * 109.47170 * 59.99868 * 8 7 5 30 30 H 1.09001 * 109.47170 * 299.99204 * 9 8 7 31 31 H 1.08995 * 109.47567 * 60.00322 * 9 8 7 32 32 H 1.08998 * 109.46913 * 300.00531 * 10 9 8 33 33 H 1.08999 * 109.46866 * 59.99420 * 10 9 8 34 34 H 0.97002 * 119.99632 * 179.97438 * 14 13 11 35 35 H 1.09002 * 115.55911 * 85.68670 * 19 2 1 36 36 H 1.08990 * 117.49990 * 145.01974 * 20 19 2 37 37 H 1.09004 * 117.49237 * 359.97438 * 20 19 2 38 38 H 1.08999 * 117.49685 * 0.02562 * 21 19 2 39 39 H 1.08997 * 117.50044 * 214.98097 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1495 -0.0048 -2.3804 6 7 1.8391 1.2597 -2.4391 7 7 2.6082 -0.6529 -3.5028 8 6 2.7487 0.0781 -4.7647 9 6 3.2740 -0.8679 -5.8463 10 6 3.4201 -0.1048 -7.1643 11 6 3.9370 -1.0366 -8.2299 12 1 4.1413 -2.0699 -7.9908 13 6 4.1500 -0.5700 -9.5097 14 7 4.6016 -1.3832 -10.4394 15 14 3.7973 1.2172 -9.9229 16 1 5.0186 2.0294 -9.6902 17 1 3.3950 1.3255 -11.3483 18 1 2.6980 1.7175 -9.0589 19 6 2.0400 -0.7212 1.2493 20 6 1.6357 -0.1495 2.6097 21 6 3.0742 0.0051 2.1116 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 2.2490 -1.6318 -1.1526 26 1 1.9321 1.7437 -3.2746 27 1 2.8396 -1.5938 -3.4591 28 1 1.7782 0.4721 -5.0663 29 1 3.4498 0.9020 -4.6313 30 1 4.2447 -1.2615 -5.5445 31 1 2.5733 -1.6920 -5.9799 32 1 2.4493 0.2886 -7.4659 33 1 4.1206 0.7196 -7.0311 34 1 4.7511 -1.0549 -11.3398 35 1 2.1270 -1.8044 1.1644 36 1 1.4569 -0.8565 3.4196 37 1 1.0068 0.7408 2.6145 38 1 3.3909 0.9970 1.7892 39 1 3.8416 -0.6002 2.5941 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899267708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:16 Heat of formation + Delta-G solvation = 36.596399 kcal Electronic energy + Delta-G solvation = -16463.507997 eV Core-core repulsion = 13827.592340 eV Total energy + Delta-G solvation = -2635.915657 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.169 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.09600 -37.66067 -35.18569 -33.47264 -31.95666 -30.42276 -29.73000 -26.89303 -24.40514 -22.75982 -22.54691 -20.54712 -20.37655 -20.05489 -17.54922 -16.94614 -16.51414 -15.43856 -15.07369 -14.76924 -14.33227 -14.07541 -13.90303 -13.59135 -13.00884 -12.71472 -12.48969 -12.14359 -11.94918 -11.65293 -11.55567 -11.10483 -10.95103 -10.86684 -10.68665 -10.30398 -10.08429 -9.90000 -9.74199 -9.25939 -9.12660 -8.58399 -8.55717 -7.81126 -6.08572 -4.07507 2.86370 3.29037 3.31463 3.36737 3.40108 3.55397 4.20062 4.39783 4.41929 4.65734 4.73284 5.00714 5.25305 5.28900 5.35526 5.41920 5.43134 5.53828 5.57373 5.62793 5.77919 5.84970 5.90627 5.96199 6.13803 6.29954 6.33370 6.39847 6.71551 6.82108 7.15779 7.19851 7.32711 7.47905 7.73611 8.21537 8.48044 8.95233 9.03459 9.53444 11.04729 Molecular weight = 239.17amu Principal moments of inertia in cm(-1) A = 0.058004 B = 0.003388 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.607153 B = 8263.583739 C = 8423.463014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.204 3.796 3 H 0.092 0.908 4 N -0.725 5.725 5 C 0.634 3.366 6 N -0.838 5.838 7 N -0.772 5.772 8 C 0.127 3.873 9 C -0.109 4.109 10 C -0.010 4.010 11 C -0.523 4.523 12 H 0.071 0.929 13 C 0.066 3.934 14 N -0.903 5.903 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.164 4.164 20 C -0.171 4.171 21 C -0.177 4.177 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.397 0.603 26 H 0.338 0.662 27 H 0.388 0.612 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.018 0.982 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 1.289 23.673 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.098 3.902 3 H 0.109 0.891 4 N -0.368 5.368 5 C 0.267 3.733 6 N -0.489 5.489 7 N -0.416 5.416 8 C 0.003 3.997 9 C -0.147 4.147 10 C -0.048 4.048 11 C -0.561 4.561 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.542 5.542 15 Si 0.708 3.292 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.183 4.183 20 C -0.209 4.209 21 C -0.214 4.214 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.232 0.768 26 H 0.155 0.845 27 H 0.221 0.779 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.294 2.206 24.149 25.053 hybrid contribution 0.432 -0.256 -1.357 1.447 sum -5.863 1.950 22.792 23.615 Atomic orbital electron populations 1.22143 0.95775 1.01547 1.02258 1.20181 0.93168 0.96307 0.80547 0.89053 1.43813 1.74489 1.11855 1.06641 1.18790 0.86501 0.87551 0.80471 1.69582 1.41044 1.04035 1.34192 1.45644 1.73595 1.13595 1.08805 1.21476 1.00200 0.95746 0.82304 1.21633 1.00429 0.98006 0.94644 1.19502 0.96776 0.96207 0.92358 1.21090 1.43855 0.97792 0.93335 0.91039 1.25035 0.94474 0.97671 0.96316 1.69911 1.45860 1.35481 1.02906 0.86764 0.79285 0.85579 0.77584 1.20234 1.21345 1.18928 1.22539 1.04497 0.99362 0.91938 1.22925 0.98306 1.03279 0.96348 1.23043 0.92427 1.02259 1.03677 0.93132 0.92278 0.91615 0.76832 0.84511 0.77881 0.92633 0.92654 0.92152 0.92129 0.96365 0.96803 0.92667 0.87755 0.88742 0.88470 0.88523 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.33 37.16 0.35 -1.21 16 2 C 0.20 2.05 2.80 -67.93 -0.19 1.86 16 3 H 0.09 1.12 7.29 -51.93 -0.38 0.74 16 4 N -0.73 -7.87 5.19 -55.29 -0.29 -8.16 16 5 C 0.63 8.85 8.69 -320.11 -2.78 6.07 16 6 N -0.84 -13.20 12.84 30.15 0.39 -12.81 16 7 N -0.77 -10.55 5.67 -61.79 -0.35 -10.90 16 8 C 0.13 2.01 5.02 -4.04 -0.02 1.99 16 9 C -0.11 -2.03 5.27 -26.73 -0.14 -2.17 16 10 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 11 C -0.52 -14.71 9.66 -34.44 -0.33 -15.05 16 12 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 13 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 14 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 15 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 19 C -0.16 -1.29 5.35 -90.62 -0.48 -1.77 16 20 C -0.17 -1.16 9.74 -26.73 -0.26 -1.42 16 21 C -0.18 -1.34 10.18 -26.73 -0.27 -1.61 16 22 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 23 H 0.06 0.50 7.29 -51.93 -0.38 0.12 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.40 3.45 8.65 -40.82 -0.35 3.09 16 26 H 0.34 5.45 7.15 -40.82 -0.29 5.16 16 27 H 0.39 4.62 8.57 -40.82 -0.35 4.27 16 28 H 0.06 0.90 7.97 -51.93 -0.41 0.49 16 29 H 0.06 0.89 7.97 -51.93 -0.41 0.48 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 33 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.10 0.73 8.07 -51.93 -0.42 0.31 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.64 7.61 -51.93 -0.40 0.25 16 38 H 0.10 0.79 8.05 -51.93 -0.42 0.37 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 319.94 15.07 4.82 4.82 Total: -1.00 -30.92 319.94 -10.37 -41.28 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.70 Total: 7.62 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -4.35 Total: -11.84 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.52 Total: -58.83 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.92 -10.37 -41.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899267708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.881 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds