Wall clock time and date at job start Thu Apr 9 2020 12:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46997 * 2 1 4 4 N 1.46499 * 109.46736 * 239.99854 * 2 1 3 5 5 C 1.37482 * 119.99945 * 85.00162 * 4 2 1 6 6 N 1.30334 * 120.00034 * 359.97438 * 5 4 2 7 7 N 1.37481 * 119.99596 * 179.97438 * 5 4 2 8 8 C 1.46507 * 119.99700 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46982 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.47245 * 179.97438 * 9 8 7 11 11 C 1.50693 * 109.47647 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99790 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00447 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00160 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99516 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46839 * 90.00650 * 15 13 11 17 17 H 1.48504 * 109.46604 * 209.99911 * 15 13 11 18 18 H 1.48495 * 109.47488 * 330.00220 * 15 13 11 19 19 C 1.53001 * 109.47016 * 119.99845 * 2 1 3 20 20 C 1.53000 * 117.50223 * 299.99980 * 19 2 1 21 21 C 1.52997 * 117.49889 * 231.37242 * 19 2 1 22 22 H 1.09007 * 109.47169 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47267 * 300.00032 * 1 2 3 24 24 H 1.08997 * 109.47409 * 59.99734 * 1 2 3 25 25 H 0.97005 * 120.00208 * 264.99542 * 4 2 1 26 26 H 0.97004 * 120.00200 * 179.97438 * 6 5 4 27 27 H 0.96996 * 120.00774 * 359.97438 * 7 5 4 28 28 H 1.09000 * 109.47196 * 299.99925 * 8 7 5 29 29 H 1.09006 * 109.47170 * 59.99868 * 8 7 5 30 30 H 1.09001 * 109.47170 * 299.99204 * 9 8 7 31 31 H 1.08995 * 109.47567 * 60.00322 * 9 8 7 32 32 H 1.08998 * 109.46913 * 300.00531 * 10 9 8 33 33 H 1.08999 * 109.46866 * 59.99420 * 10 9 8 34 34 H 0.97002 * 119.99632 * 179.97438 * 14 13 11 35 35 H 1.09002 * 115.55911 * 85.68670 * 19 2 1 36 36 H 1.08990 * 117.49990 * 145.01974 * 20 19 2 37 37 H 1.09004 * 117.49237 * 359.97438 * 20 19 2 38 38 H 1.08999 * 117.49685 * 0.02562 * 21 19 2 39 39 H 1.08997 * 117.50044 * 214.98097 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1495 -0.0048 -2.3804 6 7 1.8391 1.2597 -2.4391 7 7 2.6082 -0.6529 -3.5028 8 6 2.7487 0.0781 -4.7647 9 6 3.2740 -0.8679 -5.8463 10 6 3.4201 -0.1048 -7.1643 11 6 3.9370 -1.0366 -8.2299 12 1 4.1413 -2.0699 -7.9908 13 6 4.1500 -0.5700 -9.5097 14 7 4.6016 -1.3832 -10.4394 15 14 3.7973 1.2172 -9.9229 16 1 5.0186 2.0294 -9.6902 17 1 3.3950 1.3255 -11.3483 18 1 2.6980 1.7175 -9.0589 19 6 2.0400 -0.7212 1.2493 20 6 1.6357 -0.1495 2.6097 21 6 3.0742 0.0051 2.1116 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 2.2490 -1.6318 -1.1526 26 1 1.9321 1.7437 -3.2746 27 1 2.8396 -1.5938 -3.4591 28 1 1.7782 0.4721 -5.0663 29 1 3.4498 0.9020 -4.6313 30 1 4.2447 -1.2615 -5.5445 31 1 2.5733 -1.6920 -5.9799 32 1 2.4493 0.2886 -7.4659 33 1 4.1206 0.7196 -7.0311 34 1 4.7511 -1.0549 -11.3398 35 1 2.1270 -1.8044 1.1644 36 1 1.4569 -0.8565 3.4196 37 1 1.0068 0.7408 2.6145 38 1 3.3909 0.9970 1.7892 39 1 3.8416 -0.6002 2.5941 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899267708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:15 Heat of formation + Delta-G solvation = 18.480652 kcal Electronic energy + Delta-G solvation = -16464.293555 eV Core-core repulsion = 13827.592340 eV Total energy + Delta-G solvation = -2636.701215 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.01210 -38.56743 -36.48564 -35.04371 -33.60081 -31.79239 -30.68750 -28.54014 -25.38683 -24.23698 -23.10080 -22.10699 -21.26875 -21.12103 -18.98516 -18.55531 -17.56031 -16.54353 -16.45340 -16.16761 -15.55370 -15.02709 -14.88667 -14.74715 -14.66226 -14.12705 -13.77642 -13.51774 -12.96421 -12.82307 -12.72132 -12.46071 -12.23876 -11.87005 -11.75899 -11.66254 -11.57205 -11.34827 -11.25649 -10.92256 -10.77428 -10.28552 -9.57181 -8.92916 -8.30519 -6.34969 1.36884 1.38463 1.50238 1.86368 2.21366 2.35756 2.92539 3.05306 3.20357 3.74815 4.04136 4.06468 4.16091 4.17278 4.33519 4.47545 4.52015 4.63292 4.74738 4.82304 4.84808 4.86604 4.99885 5.03753 5.08497 5.11206 5.30655 5.34427 5.42180 5.47881 5.54256 5.60797 5.68939 6.17941 6.26195 6.53128 6.73345 7.17677 7.30027 7.92926 8.86125 Molecular weight = 239.17amu Principal moments of inertia in cm(-1) A = 0.058004 B = 0.003388 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.607153 B = 8263.583739 C = 8423.463014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.204 3.796 3 H 0.068 0.932 4 N -0.715 5.715 5 C 0.632 3.368 6 N -0.861 5.861 7 N -0.767 5.767 8 C 0.142 3.858 9 C -0.097 4.097 10 C -0.010 4.010 11 C -0.533 4.533 12 H 0.034 0.966 13 C 0.003 3.997 14 N -0.952 5.952 15 Si 0.950 3.050 16 H -0.267 1.267 17 H -0.285 1.285 18 H -0.245 1.245 19 C -0.167 4.167 20 C -0.161 4.161 21 C -0.184 4.184 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.409 0.591 26 H 0.333 0.667 27 H 0.398 0.602 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.266 0.734 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.623 2.024 25.502 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.099 3.901 3 H 0.086 0.914 4 N -0.358 5.358 5 C 0.265 3.735 6 N -0.512 5.512 7 N -0.412 5.412 8 C 0.017 3.983 9 C -0.135 4.135 10 C -0.048 4.048 11 C -0.571 4.571 12 H 0.052 0.948 13 C -0.194 4.194 14 N -0.592 5.592 15 Si 0.774 3.226 16 H -0.192 1.192 17 H -0.211 1.211 18 H -0.168 1.168 19 C -0.185 4.185 20 C -0.198 4.198 21 C -0.221 4.221 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.058 0.942 25 H 0.246 0.754 26 H 0.149 0.851 27 H 0.233 0.767 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.987 2.905 26.026 27.104 hybrid contribution 0.667 -0.581 -1.886 2.083 sum -6.320 2.324 24.141 25.062 Atomic orbital electron populations 1.22072 0.95463 1.01890 1.01654 1.20173 0.93338 0.95429 0.81147 0.91422 1.43879 1.73714 1.12385 1.05864 1.18959 0.85955 0.87373 0.81189 1.69622 1.42550 1.04982 1.34015 1.45433 1.73638 1.13998 1.08134 1.21136 0.99944 0.94930 0.82316 1.21400 1.00614 0.97943 0.93520 1.19454 0.96614 0.95756 0.92993 1.21474 1.43501 0.97154 0.94975 0.94779 1.26029 0.94330 1.02811 0.96213 1.70065 1.47625 1.38014 1.03541 0.85653 0.79990 0.79405 0.77584 1.19185 1.21121 1.16810 1.22464 1.05039 0.99780 0.91242 1.23014 0.97479 1.03417 0.95894 1.23078 0.93209 1.01861 1.03928 0.92230 0.90865 0.94234 0.75400 0.85113 0.76706 0.92694 0.92649 0.92256 0.92272 0.95913 0.96033 0.92489 0.86419 0.87144 0.88430 0.89663 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.33 71.98 0.67 -2.09 16 2 C 0.20 3.83 2.80 44.99 0.13 3.96 16 3 H 0.07 1.62 7.29 -2.39 -0.02 1.61 16 4 N -0.71 -14.35 5.19 -328.84 -1.71 -16.06 16 5 C 0.63 16.79 8.69 260.54 2.26 19.06 16 6 N -0.86 -26.43 12.84 -58.54 -0.75 -27.19 16 7 N -0.77 -19.67 5.67 -349.40 -1.98 -21.65 16 8 C 0.14 4.26 5.02 86.38 0.43 4.69 16 9 C -0.10 -3.49 5.27 30.59 0.16 -3.33 16 10 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 11 C -0.53 -30.33 9.66 25.60 0.25 -30.08 16 12 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 13 C 0.00 0.17 5.47 84.66 0.46 0.63 16 14 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 15 Si 0.95 44.02 27.47 68.60 1.88 45.90 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 19 C -0.17 -2.24 5.35 -10.79 -0.06 -2.30 16 20 C -0.16 -1.79 9.74 30.60 0.30 -1.49 16 21 C -0.18 -2.45 10.18 30.60 0.31 -2.14 16 22 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 23 H 0.07 1.10 7.29 -2.38 -0.02 1.08 16 24 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.41 6.18 8.65 -92.70 -0.80 5.38 16 26 H 0.33 10.48 7.15 -92.71 -0.66 9.81 16 27 H 0.40 8.71 8.57 -92.71 -0.79 7.92 16 28 H 0.05 1.68 7.97 -2.39 -0.02 1.66 16 29 H 0.06 1.69 7.97 -2.38 -0.02 1.67 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 33 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 34 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 35 H 0.12 1.30 8.07 -2.39 -0.02 1.28 16 36 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 1.09 7.61 -2.38 -0.02 1.07 16 38 H 0.08 1.33 8.05 -2.39 -0.02 1.31 16 39 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -66.88 319.94 1.52 -65.37 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -1.27 Total: 26.42 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 5.04 Total: -13.43 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -4.14 Total: -124.26 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -66.88 1.52 -65.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899267708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.848 kcal (2) G-P(sol) polarization free energy of solvation -66.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds