Wall clock time and date at job start Thu Apr 9 2020 12:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 H 1.08996 * 115.55502 * 274.27551 * 4 2 1 6 6 C 1.53006 * 117.49534 * 128.61175 * 4 2 1 7 7 C 1.52997 * 117.50019 * 59.99021 * 4 2 1 8 8 H 1.09002 * 117.49932 * 359.97438 * 7 4 2 9 9 N 1.46903 * 117.50019 * 214.97762 * 7 4 2 10 10 C 1.46896 * 111.00363 * 154.99996 * 9 7 4 11 11 C 1.52998 * 109.47500 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47053 * 300.00213 * 11 10 9 13 13 C 1.53008 * 109.46921 * 59.99692 * 11 10 9 14 14 C 1.52995 * 109.47547 * 179.97438 * 11 10 9 15 15 C 1.50692 * 109.47181 * 180.02562 * 14 11 10 16 16 H 1.07993 * 120.00381 * 359.97438 * 15 14 11 17 17 C 1.37879 * 119.99783 * 180.02562 * 15 14 11 18 18 N 1.31517 * 120.00210 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 120.00052 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46911 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47085 * 120.00172 * 19 17 15 22 22 H 1.48497 * 109.47237 * 240.00236 * 19 17 15 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 29 29 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 30 30 H 1.09002 * 117.50034 * 359.97438 * 6 4 2 31 31 H 1.08997 * 117.50085 * 145.00121 * 6 4 2 32 32 H 1.00903 * 111.00059 * 31.03995 * 9 7 4 33 33 H 1.09004 * 109.46845 * 300.00152 * 10 9 7 34 34 H 1.08996 * 109.47513 * 59.99556 * 10 9 7 35 35 H 1.08990 * 109.47446 * 59.99603 * 12 11 10 36 36 H 1.09001 * 109.46847 * 179.97438 * 12 11 10 37 37 H 1.09005 * 109.46406 * 299.99266 * 12 11 10 38 38 H 1.09004 * 109.46847 * 60.00032 * 13 11 10 39 39 H 1.09000 * 109.46932 * 180.02562 * 13 11 10 40 40 H 1.09000 * 109.46704 * 300.00378 * 13 11 10 41 41 H 1.09004 * 109.47111 * 300.00513 * 14 11 10 42 42 H 1.08996 * 109.47198 * 59.99889 * 14 11 10 43 43 H 0.97001 * 120.00109 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.1275 -0.1059 2.1446 6 6 3.0739 -1.8316 1.0514 7 6 1.6354 -2.1851 1.4345 8 1 1.0057 -2.6343 0.6665 9 7 1.3943 -2.6540 2.8056 10 6 0.4853 -3.8079 2.8153 11 6 0.2593 -4.2671 4.2571 12 6 1.5979 -4.6671 4.8807 13 6 -0.3586 -3.1243 5.0654 14 6 -0.6879 -5.4686 4.2672 15 6 -0.9110 -5.9204 5.6874 16 1 -0.4255 -5.4028 6.5013 17 6 -1.7343 -6.9954 5.9475 18 7 -2.3244 -7.6268 4.9562 19 14 -2.0103 -7.5560 7.7080 20 1 -1.2381 -6.6863 8.6312 21 1 -3.4558 -7.4648 8.0356 22 1 -1.5569 -8.9623 7.8565 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.3905 -2.0485 0.0312 31 1 3.8415 -1.9467 1.8166 32 1 1.0387 -1.9086 3.3854 33 1 -0.4682 -3.5230 2.3705 34 1 0.9256 -4.6222 2.2398 35 1 2.2723 -3.8110 4.8736 36 1 1.4369 -4.9938 5.9081 37 1 2.0380 -5.4813 4.3049 38 1 -1.3123 -2.8393 4.6210 39 1 -0.5193 -3.4513 6.0927 40 1 0.3159 -2.2681 5.0581 41 1 -1.6416 -5.1832 3.8230 42 1 -0.2482 -6.2828 3.6913 43 1 -2.9039 -8.3829 5.1392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663508943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:12 Heat of formation + Delta-G solvation = -11.312810 kcal Electronic energy + Delta-G solvation = -17502.929053 eV Core-core repulsion = 14968.476241 eV Total energy + Delta-G solvation = -2534.452813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.78402 -37.04531 -34.13311 -32.51374 -30.97899 -27.31088 -26.90105 -26.31332 -25.13127 -23.01213 -22.50922 -20.89101 -19.93457 -17.79082 -16.22142 -15.87092 -15.28720 -14.58057 -14.52727 -14.09453 -13.57229 -13.19917 -13.11841 -12.99305 -12.62408 -12.35003 -12.07945 -11.97096 -11.72826 -11.38938 -11.23668 -10.99106 -10.91513 -10.80208 -10.73674 -10.52427 -10.39854 -10.17202 -10.09894 -9.85974 -9.65317 -8.98569 -8.79289 -8.30487 -7.92613 -5.94837 -3.94819 3.33462 3.41281 3.44865 3.84450 4.22474 4.50661 4.68095 4.81056 5.02311 5.10132 5.25763 5.40185 5.41452 5.49088 5.51842 5.68823 5.71334 5.73158 5.79351 5.83819 5.91854 5.96224 6.01436 6.13610 6.17076 6.29583 6.32288 6.37529 6.53590 6.68064 6.81796 6.85122 7.22908 7.26912 7.28472 7.45670 7.68866 7.73388 7.87671 8.05711 8.50232 9.10844 9.67976 11.16893 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.047558 B = 0.004213 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.611124 B = 6644.314503 C = 6770.479466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.143 4.143 4 C -0.162 4.162 5 H 0.103 0.897 6 C -0.167 4.167 7 C 0.028 3.972 8 H 0.095 0.905 9 N -0.656 5.656 10 C 0.072 3.928 11 C -0.059 4.059 12 C -0.116 4.116 13 C -0.129 4.129 14 C 0.033 3.967 15 C -0.506 4.506 16 H 0.060 0.940 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.285 1.285 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.339 0.661 33 H 0.024 0.976 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.032 0.968 41 H 0.013 0.987 42 H 0.015 0.985 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 14.764 -8.641 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.200 4.200 4 C -0.181 4.181 5 H 0.121 0.879 6 C -0.206 4.206 7 C -0.083 4.083 8 H 0.113 0.887 9 N -0.287 5.287 10 C -0.056 4.056 11 C -0.059 4.059 12 C -0.173 4.173 13 C -0.186 4.186 14 C -0.004 4.004 15 C -0.544 4.544 16 H 0.078 0.922 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.160 0.840 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.029 14.226 -8.633 18.476 hybrid contribution -1.102 -0.075 0.708 1.312 sum 6.927 14.151 -7.924 17.636 Atomic orbital electron populations 1.21826 0.95105 1.01946 1.01491 1.20699 0.95555 0.95835 0.96323 1.21794 1.00989 0.95715 1.01514 1.22754 1.04822 0.91070 0.99492 0.87938 1.23258 0.93517 1.01999 1.01789 1.22465 0.97797 0.95528 0.92494 0.88729 1.60329 1.50746 1.10142 1.07513 1.22148 0.92733 0.92006 0.98733 1.20640 0.96847 0.97076 0.91370 1.21597 0.95658 0.99380 1.00686 1.21774 0.98572 0.96613 1.01687 1.19125 0.93127 0.91000 0.97155 1.21279 1.26948 1.13418 0.92761 0.92230 1.25022 0.96153 0.96765 0.96699 1.69980 1.31472 1.21632 1.30688 0.86609 0.77809 0.78556 0.85474 1.19771 1.21202 1.21154 0.92927 0.92602 0.92653 0.91382 0.92672 0.92903 0.92728 0.89352 0.88560 0.83984 0.95756 0.91507 0.93960 0.92697 0.94148 0.94072 0.91688 0.94876 0.96913 0.96662 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.03 37.16 0.34 -1.06 16 2 C -0.07 -0.61 3.07 -90.62 -0.28 -0.89 16 3 C -0.14 -1.16 9.17 37.16 0.34 -0.82 16 4 C -0.16 -1.74 4.95 -90.62 -0.45 -2.19 16 5 H 0.10 1.13 8.11 -51.93 -0.42 0.71 16 6 C -0.17 -1.92 10.10 -26.73 -0.27 -2.19 16 7 C 0.03 0.36 5.46 -67.71 -0.37 -0.01 16 8 H 0.10 1.25 7.36 -51.93 -0.38 0.87 16 9 N -0.66 -9.81 5.96 -106.73 -0.64 -10.45 16 10 C 0.07 1.28 4.50 -3.83 -0.02 1.26 16 11 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 12 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 13 C -0.13 -2.43 7.89 37.16 0.29 -2.13 16 14 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 15 C -0.51 -13.93 7.65 -34.44 -0.26 -14.19 16 16 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 19 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.58 7.28 -51.93 -0.38 0.20 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.63 7.90 -51.93 -0.41 0.22 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.91 8.05 -51.93 -0.42 0.50 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.34 4.90 6.73 -39.29 -0.26 4.63 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 36 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 40 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 41 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -28.68 334.64 -8.76 -37.44 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.20 Total: 0.87 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -0.68 Total: -23.31 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.10 Total: -36.72 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.68 -8.76 -37.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663508943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.125 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds