Wall clock time and date at job start Thu Apr 9 2020 12:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 H 1.08996 * 115.55502 * 274.27551 * 4 2 1 6 6 C 1.53006 * 117.49534 * 128.61175 * 4 2 1 7 7 C 1.52997 * 117.50019 * 59.99021 * 4 2 1 8 8 H 1.09002 * 117.49932 * 359.97438 * 7 4 2 9 9 N 1.46903 * 117.50019 * 214.97762 * 7 4 2 10 10 C 1.46896 * 111.00363 * 154.99996 * 9 7 4 11 11 C 1.52998 * 109.47500 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47053 * 300.00213 * 11 10 9 13 13 C 1.53008 * 109.46921 * 59.99692 * 11 10 9 14 14 C 1.52995 * 109.47547 * 179.97438 * 11 10 9 15 15 C 1.50692 * 109.47181 * 180.02562 * 14 11 10 16 16 H 1.07993 * 120.00381 * 359.97438 * 15 14 11 17 17 C 1.37879 * 119.99783 * 180.02562 * 15 14 11 18 18 N 1.31517 * 120.00210 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 120.00052 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46911 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47085 * 120.00172 * 19 17 15 22 22 H 1.48497 * 109.47237 * 240.00236 * 19 17 15 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 29 29 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 30 30 H 1.09002 * 117.50034 * 359.97438 * 6 4 2 31 31 H 1.08997 * 117.50085 * 145.00121 * 6 4 2 32 32 H 1.00903 * 111.00059 * 31.03995 * 9 7 4 33 33 H 1.09004 * 109.46845 * 300.00152 * 10 9 7 34 34 H 1.08996 * 109.47513 * 59.99556 * 10 9 7 35 35 H 1.08990 * 109.47446 * 59.99603 * 12 11 10 36 36 H 1.09001 * 109.46847 * 179.97438 * 12 11 10 37 37 H 1.09005 * 109.46406 * 299.99266 * 12 11 10 38 38 H 1.09004 * 109.46847 * 60.00032 * 13 11 10 39 39 H 1.09000 * 109.46932 * 180.02562 * 13 11 10 40 40 H 1.09000 * 109.46704 * 300.00378 * 13 11 10 41 41 H 1.09004 * 109.47111 * 300.00513 * 14 11 10 42 42 H 1.08996 * 109.47198 * 59.99889 * 14 11 10 43 43 H 0.97001 * 120.00109 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.1275 -0.1059 2.1446 6 6 3.0739 -1.8316 1.0514 7 6 1.6354 -2.1851 1.4345 8 1 1.0057 -2.6343 0.6665 9 7 1.3943 -2.6540 2.8056 10 6 0.4853 -3.8079 2.8153 11 6 0.2593 -4.2671 4.2571 12 6 1.5979 -4.6671 4.8807 13 6 -0.3586 -3.1243 5.0654 14 6 -0.6879 -5.4686 4.2672 15 6 -0.9110 -5.9204 5.6874 16 1 -0.4255 -5.4028 6.5013 17 6 -1.7343 -6.9954 5.9475 18 7 -2.3244 -7.6268 4.9562 19 14 -2.0103 -7.5560 7.7080 20 1 -1.2381 -6.6863 8.6312 21 1 -3.4558 -7.4648 8.0356 22 1 -1.5569 -8.9623 7.8565 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.3905 -2.0485 0.0312 31 1 3.8415 -1.9467 1.8166 32 1 1.0387 -1.9086 3.3854 33 1 -0.4682 -3.5230 2.3705 34 1 0.9256 -4.6222 2.2398 35 1 2.2723 -3.8110 4.8736 36 1 1.4369 -4.9938 5.9081 37 1 2.0380 -5.4813 4.3049 38 1 -1.3123 -2.8393 4.6210 39 1 -0.5193 -3.4513 6.0927 40 1 0.3159 -2.2681 5.0581 41 1 -1.6416 -5.1832 3.8230 42 1 -0.2482 -6.2828 3.6913 43 1 -2.9039 -8.3829 5.1392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663508943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:11 Heat of formation + Delta-G solvation = -26.561236 kcal Electronic energy + Delta-G solvation = -17503.590275 eV Core-core repulsion = 14968.476241 eV Total energy + Delta-G solvation = -2535.114034 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.86786 -38.50105 -35.34385 -34.32400 -32.31826 -28.91740 -27.99320 -27.90644 -26.71216 -24.44538 -23.78869 -21.96810 -20.79254 -19.43147 -18.33883 -17.03720 -16.48340 -16.28193 -15.72265 -15.33451 -14.97677 -14.62594 -14.39183 -14.04055 -13.91509 -13.82213 -13.39988 -13.07322 -13.00814 -12.83081 -12.66222 -12.56531 -12.27164 -12.15364 -12.11456 -12.03957 -11.87026 -11.56193 -11.46593 -11.21800 -11.00930 -10.81696 -10.56201 -10.51411 -9.11844 -8.14254 -6.21365 1.40260 1.41206 1.53528 2.43642 2.91763 3.12003 3.19705 3.83464 4.00888 4.11949 4.15911 4.16984 4.32476 4.36868 4.45306 4.51862 4.69174 4.74125 4.78653 4.84048 4.88334 4.94657 5.01261 5.06826 5.07234 5.08936 5.20587 5.22236 5.23950 5.35108 5.43552 5.50975 5.53005 5.54821 5.57455 5.65028 5.86293 5.92323 6.15665 6.37021 6.51177 6.93915 7.46067 8.98394 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.047558 B = 0.004213 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.611124 B = 6644.314503 C = 6770.479466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.140 4.140 4 C -0.143 4.143 5 H 0.105 0.895 6 C -0.161 4.161 7 C 0.006 3.994 8 H 0.089 0.911 9 N -0.652 5.652 10 C 0.087 3.913 11 C -0.056 4.056 12 C -0.106 4.106 13 C -0.122 4.122 14 C 0.040 3.960 15 C -0.513 4.513 16 H 0.067 0.933 17 C -0.005 4.005 18 N -0.938 5.938 19 Si 0.957 3.043 20 H -0.260 1.260 21 H -0.282 1.282 22 H -0.283 1.283 23 H 0.063 0.937 24 H 0.041 0.959 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.344 0.656 33 H 0.018 0.982 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.029 0.971 38 H 0.037 0.963 39 H 0.048 0.952 40 H 0.066 0.934 41 H -0.016 1.016 42 H -0.017 1.017 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.671 16.602 -8.170 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 C -0.197 4.197 4 C -0.162 4.162 5 H 0.123 0.877 6 C -0.200 4.200 7 C -0.105 4.105 8 H 0.106 0.894 9 N -0.284 5.284 10 C -0.043 4.043 11 C -0.056 4.056 12 C -0.164 4.164 13 C -0.179 4.179 14 C 0.002 3.998 15 C -0.551 4.551 16 H 0.085 0.915 17 C -0.202 4.202 18 N -0.580 5.580 19 Si 0.783 3.217 20 H -0.184 1.184 21 H -0.208 1.208 22 H -0.209 1.209 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.165 0.835 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.122 16.085 -8.162 20.213 hybrid contribution -1.425 -0.628 0.490 1.633 sum 7.697 15.456 -7.671 18.894 Atomic orbital electron populations 1.21818 0.95299 1.01198 1.02000 1.20724 0.95342 0.96623 0.95639 1.21768 1.01212 0.94670 1.02075 1.22789 1.03272 0.89940 1.00187 0.87653 1.23298 0.92512 1.01807 1.02340 1.22480 0.99140 0.97710 0.91132 0.89364 1.60260 1.49439 1.09531 1.09124 1.21819 0.93009 0.92907 0.96527 1.20506 0.95961 0.95570 0.93581 1.21496 0.95574 0.99959 0.99337 1.21684 0.99154 0.96997 1.00088 1.19005 0.92825 0.92287 0.95658 1.21647 1.26457 1.13285 0.93759 0.91536 1.25935 0.96059 0.97077 1.01098 1.70120 1.32432 1.22328 1.33105 0.85510 0.77848 0.78113 0.80279 1.18416 1.20766 1.20854 0.91754 0.93965 0.92860 0.91106 0.92294 0.91926 0.92653 0.88134 0.88906 0.83514 0.96403 0.92764 0.91489 0.94162 0.95171 0.94412 0.93321 0.91494 0.99761 0.99836 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.03 71.98 0.65 -1.89 16 2 C -0.06 -1.06 3.07 -10.79 -0.03 -1.10 16 3 C -0.14 -1.90 9.17 71.98 0.66 -1.24 16 4 C -0.14 -2.75 4.95 -10.79 -0.05 -2.81 16 5 H 0.11 2.02 8.11 -2.39 -0.02 2.00 16 6 C -0.16 -3.36 10.10 30.60 0.31 -3.06 16 7 C 0.01 0.14 5.46 44.91 0.25 0.39 16 8 H 0.09 2.29 7.36 -2.39 -0.02 2.28 16 9 N -0.65 -18.59 5.96 -491.58 -2.93 -21.52 16 10 C 0.09 3.07 4.50 86.30 0.39 3.45 16 11 C -0.06 -2.26 0.60 -52.18 -0.03 -2.29 16 12 C -0.11 -4.13 8.06 71.98 0.58 -3.55 16 13 C -0.12 -4.45 7.89 71.98 0.57 -3.88 16 14 C 0.04 2.10 4.04 29.84 0.12 2.22 16 15 C -0.51 -28.70 7.65 25.60 0.20 -28.50 16 16 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 17 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 18 N -0.94 -57.87 13.29 21.45 0.28 -57.59 16 19 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.04 0.84 7.28 -2.39 -0.02 0.82 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 1.15 7.90 -2.39 -0.02 1.13 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 1.85 8.05 -2.39 -0.02 1.83 16 31 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.34 9.15 6.73 -89.69 -0.60 8.54 16 33 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 2.25 7.60 -2.39 -0.02 2.24 16 36 H 0.04 1.65 6.62 -2.39 -0.02 1.64 16 37 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.05 1.93 6.62 -2.39 -0.02 1.91 16 40 H 0.07 1.98 6.57 -2.39 -0.02 1.96 16 41 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 42 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 43 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -61.99 334.64 3.78 -58.21 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.34 Total: 16.20 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 4.06 Total: -42.08 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -2.64 Total: -79.10 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -61.99 3.78 -58.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663508943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.645 kcal (2) G-P(sol) polarization free energy of solvation -61.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds