Wall clock time and date at job start Thu Apr 9 2020 12:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47745 * 2 1 4 4 H 1.09007 * 109.57077 * 305.25545 * 3 2 1 5 5 C 1.50462 * 109.67854 * 65.56375 * 3 2 1 6 6 C 1.54294 * 113.03874 * 212.03145 * 5 3 2 7 7 C 1.54063 * 112.28481 * 318.30554 * 6 5 3 8 8 N 1.44279 * 111.98271 * 318.91344 * 7 6 5 9 9 C 1.46900 * 110.99934 * 219.31325 * 8 7 6 10 10 C 1.53008 * 109.46972 * 303.29766 * 9 8 7 11 11 C 1.53005 * 109.46958 * 182.21652 * 10 9 8 12 12 C 1.50698 * 109.46588 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00552 * 359.97438 * 12 11 10 14 14 C 1.37887 * 119.99376 * 180.02562 * 12 11 10 15 15 N 1.31503 * 120.00146 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99670 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46813 * 269.99746 * 16 14 12 18 18 H 1.48498 * 109.47241 * 29.99523 * 16 14 12 19 19 H 1.48493 * 109.46864 * 149.99372 * 16 14 12 20 20 C 1.47798 * 109.46180 * 96.43829 * 8 7 6 21 21 C 1.45856 * 112.91770 * 276.73923 * 20 8 7 22 22 H 1.09001 * 109.46732 * 59.99659 * 1 2 3 23 23 H 1.08994 * 109.47408 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46962 * 300.00315 * 1 2 3 25 25 H 1.08997 * 109.46962 * 239.99684 * 2 1 3 26 26 H 1.09001 * 109.46732 * 120.00341 * 2 1 3 27 27 H 1.09007 * 108.77017 * 332.95060 * 5 3 2 28 28 H 1.09004 * 108.76677 * 91.22778 * 5 3 2 29 29 H 1.08993 * 108.91770 * 79.02491 * 6 5 3 30 30 H 1.08998 * 108.91912 * 197.57811 * 6 5 3 31 31 H 1.09000 * 108.98099 * 198.27188 * 7 6 5 32 32 H 1.08995 * 108.98562 * 79.55791 * 7 6 5 33 33 H 1.08997 * 109.47439 * 183.30196 * 9 8 7 34 34 H 1.08997 * 109.47407 * 63.29470 * 9 8 7 35 35 H 1.08997 * 109.46776 * 62.22296 * 10 9 8 36 36 H 1.08992 * 109.47250 * 302.21692 * 10 9 8 37 37 H 1.08990 * 109.46824 * 60.00291 * 11 10 9 38 38 H 1.09000 * 109.46868 * 299.99977 * 11 10 9 39 39 H 0.97008 * 119.99976 * 180.02562 * 15 14 12 40 40 H 1.09003 * 108.79789 * 37.63004 * 20 8 7 41 41 H 1.09007 * 108.79216 * 155.96925 * 20 8 7 42 42 H 1.09002 * 109.05869 * 181.87221 * 21 20 8 43 43 H 1.09003 * 109.05993 * 300.78549 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6030 1.9843 -0.8387 5 6 1.6565 2.1155 1.2898 6 6 1.3922 3.6269 1.1269 7 6 2.4234 4.3042 0.2042 8 7 3.7616 3.8204 0.4428 9 6 4.7385 4.9149 0.3660 10 6 4.6295 5.6010 -0.9972 11 6 5.6841 6.7049 -1.0983 12 6 5.5763 7.3811 -2.4407 13 1 4.8306 7.0558 -3.1510 14 6 6.4306 8.4145 -2.7626 15 7 7.3389 8.8103 -1.8980 16 14 6.2975 9.2522 -4.4269 17 1 7.1725 8.5550 -5.4033 18 1 4.8899 9.1984 -4.8971 19 1 6.7242 10.6692 -4.3034 20 6 4.0813 2.7557 -0.5311 21 6 3.5799 1.4470 -0.1269 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 0.7550 1.6416 1.6782 28 1 2.4626 1.9777 2.0105 29 1 0.3962 3.7682 0.7075 30 1 1.4311 4.1002 2.1080 31 1 2.3997 5.3803 0.3757 32 1 2.1548 4.1061 -0.8334 33 1 5.7442 4.5137 0.4915 34 1 4.5353 5.6393 1.1546 35 1 3.6363 6.0364 -1.1064 36 1 4.7939 4.8681 -1.7870 37 1 6.6773 6.2696 -0.9890 38 1 5.5197 7.4379 -0.3084 39 1 7.9396 9.5376 -2.1243 40 1 3.6431 3.0175 -1.4942 41 1 5.1640 2.6959 -0.6431 42 1 3.8780 0.7068 -0.8694 43 1 4.0171 1.1800 0.8353 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079054621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:47 Heat of formation + Delta-G solvation = -32.836636 kcal Electronic energy + Delta-G solvation = -17749.498347 eV Core-core repulsion = 15214.112191 eV Total energy + Delta-G solvation = -2535.386156 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.51999 -36.35807 -33.61674 -32.40573 -31.91550 -30.27137 -27.05467 -25.35395 -25.08540 -22.73731 -21.88988 -20.93599 -19.74245 -18.76609 -16.39476 -15.71015 -15.56771 -14.70842 -14.47813 -14.41010 -14.24848 -13.88432 -13.64522 -12.71706 -12.56887 -12.42982 -12.25948 -11.98627 -11.77659 -11.52032 -11.18538 -11.04297 -10.87692 -10.76029 -10.61146 -10.60320 -10.48199 -10.33605 -10.19099 -9.94681 -9.61337 -9.45962 -9.15766 -8.34539 -7.81561 -5.99296 -4.01885 3.31423 3.37579 3.41036 4.24875 4.46206 4.65082 4.81345 4.89834 5.20012 5.23900 5.32447 5.36045 5.40040 5.43071 5.50226 5.65564 5.68942 5.72729 5.81768 5.86171 5.91179 5.94429 6.04683 6.11455 6.15768 6.23531 6.31371 6.34173 6.35885 6.38796 6.45117 6.54754 6.65085 6.83123 7.07822 7.47387 7.57216 7.67750 7.83016 8.00434 8.43956 9.05121 9.62126 11.11743 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.042255 B = 0.004252 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.477056 B = 6583.321482 C = 6707.718527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.085 4.085 4 H 0.066 0.934 5 C -0.105 4.105 6 C -0.108 4.108 7 C 0.054 3.946 8 N -0.529 5.529 9 C 0.053 3.947 10 C -0.143 4.143 11 C 0.024 3.976 12 C -0.520 4.520 13 H 0.052 0.948 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.274 1.274 19 H -0.286 1.286 20 C 0.053 3.947 21 C -0.108 4.108 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.501 -15.677 5.462 20.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.103 4.103 4 H 0.084 0.916 5 C -0.143 4.143 6 C -0.147 4.147 7 C -0.075 4.075 8 N -0.251 5.251 9 C -0.074 4.074 10 C -0.182 4.182 11 C -0.014 4.014 12 C -0.559 4.559 13 H 0.071 0.929 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.199 1.199 19 H -0.212 1.212 20 C -0.074 4.074 21 C -0.145 4.145 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.336 -15.751 5.985 20.308 hybrid contribution 0.022 0.986 -1.811 2.062 sum -11.314 -14.765 4.174 19.064 Atomic orbital electron populations 1.21845 0.96219 1.01118 1.01947 1.21584 0.95574 0.96754 1.01637 1.20964 0.95467 0.95173 0.98697 0.91574 1.21304 1.00922 0.94664 0.97393 1.21937 0.97395 0.95485 0.99846 1.21876 0.89209 0.98852 0.97599 1.61846 1.02255 1.11176 1.49867 1.22453 0.95044 0.91816 0.98066 1.22266 1.01014 0.99425 0.95535 1.19026 0.93171 0.92328 0.96831 1.21263 1.16913 1.16735 1.00961 0.92934 1.25027 0.95389 0.97037 0.96998 1.69962 1.20037 1.28536 1.34941 0.86615 0.78317 0.78786 0.84423 1.20672 1.19933 1.21180 1.20957 1.00637 0.92223 0.93622 1.20664 0.95117 0.96807 1.01951 0.92892 0.93180 0.92403 0.92287 0.92186 0.92843 0.91740 0.92816 0.92323 0.91638 0.94409 0.91216 0.91163 0.93408 0.93517 0.96663 0.96630 0.93013 0.94589 0.91561 0.92158 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.72 37.16 0.36 -0.91 16 2 C -0.12 -1.07 5.32 -26.73 -0.14 -1.21 16 3 C -0.08 -0.91 1.86 -91.10 -0.17 -1.07 16 4 H 0.07 0.78 7.15 -51.93 -0.37 0.41 16 5 C -0.11 -1.16 4.87 -27.32 -0.13 -1.29 16 6 C -0.11 -1.29 6.15 -25.50 -0.16 -1.45 16 7 C 0.05 0.77 4.04 -4.67 -0.02 0.75 16 8 N -0.53 -8.03 4.45 -239.55 -1.07 -9.09 16 9 C 0.05 0.94 5.06 -3.82 -0.02 0.92 16 10 C -0.14 -2.99 4.60 -26.72 -0.12 -3.12 16 11 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 12 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -27.26 13.28 55.43 0.74 -26.52 16 16 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.05 0.75 3.97 -6.71 -0.03 0.72 16 21 C -0.11 -1.25 4.91 -29.32 -0.14 -1.39 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.47 6.28 -51.93 -0.33 0.15 16 25 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.52 5.79 -51.93 -0.30 0.22 16 28 H 0.06 0.77 7.38 -51.93 -0.38 0.39 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.01 6.84 -51.93 -0.36 0.65 16 32 H 0.04 0.56 6.51 -51.93 -0.34 0.22 16 33 H 0.07 1.23 7.91 -51.93 -0.41 0.82 16 34 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 35 H 0.05 1.00 6.77 -51.93 -0.35 0.65 16 36 H 0.05 0.98 7.04 -51.93 -0.37 0.61 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.04 0.54 6.84 -51.93 -0.36 0.18 16 41 H 0.07 0.97 7.66 -51.93 -0.40 0.57 16 42 H 0.06 0.63 7.96 -51.93 -0.41 0.22 16 43 H 0.07 0.78 7.59 -51.93 -0.39 0.39 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -29.53 319.57 -9.76 -39.29 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -8.10 Total: -4.07 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -1.12 Total: -21.34 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.33 Total: -35.62 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.53 -9.76 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079054621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.457 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds