Wall clock time and date at job start Thu Apr 9 2020 12:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47480 * 2 1 4 4 H 1.09000 * 109.46765 * 53.52880 * 3 2 1 5 5 C 1.50703 * 109.47290 * 173.52511 * 3 2 1 6 6 H 1.07998 * 120.00048 * 119.99852 * 5 3 2 7 7 C 1.37881 * 119.99983 * 300.00314 * 5 3 2 8 8 N 1.31518 * 119.99678 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99744 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46939 * 90.00325 * 9 7 5 11 11 H 1.48502 * 109.47068 * 209.99543 * 9 7 5 12 12 H 1.48494 * 109.47312 * 329.99613 * 9 7 5 13 13 N 1.46901 * 109.47073 * 293.52473 * 3 2 1 14 14 C 1.46899 * 110.99604 * 104.53085 * 13 3 2 15 15 H 1.08996 * 109.47441 * 318.44165 * 14 13 3 16 16 C 1.53006 * 109.47174 * 78.44133 * 14 13 3 17 17 C 1.53002 * 109.47071 * 198.44126 * 14 13 3 18 18 C 1.52995 * 109.47161 * 65.00158 * 17 14 13 19 19 C 1.54270 * 110.03126 * 292.16811 * 18 17 14 20 20 C 1.54886 * 104.19597 * 217.10570 * 19 18 17 21 21 C 1.54888 * 102.75107 * 37.94215 * 20 19 18 22 22 C 1.53874 * 110.03540 * 175.00499 * 18 17 14 23 23 H 1.09003 * 109.47307 * 60.07029 * 1 2 3 24 24 H 1.08997 * 109.47658 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47100 * 300.07746 * 1 2 3 26 26 H 1.09000 * 109.46892 * 240.00154 * 2 1 3 27 27 H 1.09003 * 109.47100 * 120.00406 * 2 1 3 28 28 H 0.96998 * 119.99213 * 179.97438 * 8 7 5 29 29 H 1.00898 * 110.99717 * 228.47975 * 13 3 2 30 30 H 1.08999 * 109.46801 * 60.00226 * 16 14 13 31 31 H 1.08998 * 109.46730 * 179.97438 * 16 14 13 32 32 H 1.08991 * 109.46883 * 299.99723 * 16 14 13 33 33 H 1.09007 * 109.46856 * 305.00040 * 17 14 13 34 34 H 1.08999 * 109.47069 * 184.99973 * 17 14 13 35 35 H 1.08995 * 110.02236 * 53.60645 * 18 17 14 36 36 H 1.09004 * 110.48527 * 335.78131 * 19 18 17 37 37 H 1.09001 * 110.48732 * 98.42757 * 19 18 17 38 38 H 1.08997 * 110.75904 * 279.62755 * 20 19 18 39 39 H 1.09005 * 110.91788 * 156.32869 * 20 19 18 40 40 H 1.08995 * 110.48766 * 203.37874 * 21 20 19 41 41 H 1.08997 * 110.48760 * 80.73632 * 21 20 19 42 42 H 1.09000 * 110.03403 * 238.57196 * 22 18 17 43 43 H 1.09000 * 110.02917 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5852 1.9886 0.8264 5 6 3.5385 1.4454 0.1602 6 1 4.1625 1.8833 -0.6048 7 6 4.1129 0.8890 1.2834 8 7 3.3529 0.3561 2.2152 9 14 5.9703 0.8921 1.4816 10 1 6.3910 2.1309 2.1841 11 1 6.3853 -0.2923 2.2756 12 1 6.6110 0.8399 0.1431 13 7 1.6821 2.0884 -1.2699 14 6 0.5576 3.0163 -1.0898 15 1 -0.1839 2.5650 -0.4305 16 6 1.0658 4.3193 -0.4695 17 6 -0.0812 3.3132 -2.4481 18 6 -0.6996 2.0323 -3.0117 19 6 0.4107 1.0236 -3.3719 20 6 -0.1016 0.3402 -4.6640 21 6 -0.7749 1.5092 -5.4251 22 6 -1.4533 2.3410 -4.3172 23 1 -0.3634 0.5127 -0.8906 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5150 0.8893 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7570 -0.0356 3.0052 29 1 2.4783 2.5591 -1.6731 30 1 1.8072 4.7706 -1.1289 31 1 0.2314 5.0079 -0.3363 32 1 1.5208 4.1078 0.4981 33 1 0.6807 3.6817 -3.1351 34 1 -0.8575 4.0687 -2.3271 35 1 -1.3805 1.5942 -2.2821 36 1 1.3504 1.5423 -3.5616 37 1 0.5327 0.2900 -2.5750 38 1 -0.8288 -0.4366 -4.4279 39 1 0.7265 -0.0707 -5.2416 40 1 -1.5179 1.1300 -6.1266 41 1 -0.0266 2.1062 -5.9463 42 1 -2.5000 2.0521 -4.2214 43 1 -1.3789 3.4035 -4.5490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136959429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:19 Heat of formation + Delta-G solvation = -35.431910 kcal Electronic energy + Delta-G solvation = -18608.873298 eV Core-core repulsion = 16073.374602 eV Total energy + Delta-G solvation = -2535.498696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.54397 -36.36168 -33.61756 -31.47716 -30.09519 -28.39149 -28.21438 -25.90093 -24.50966 -22.70668 -20.31482 -20.03123 -19.60236 -18.82080 -16.51545 -15.60005 -15.05256 -14.65296 -14.19403 -13.72230 -13.13503 -13.01869 -12.86439 -12.70580 -12.23250 -11.95648 -11.70638 -11.58875 -11.36030 -11.10252 -10.82718 -10.79421 -10.68016 -10.43352 -10.38209 -10.27505 -10.13522 -10.08785 -9.87249 -9.85381 -9.56346 -9.21433 -8.78587 -8.38601 -7.04280 -5.99423 -4.07011 3.29101 3.36464 3.39630 4.41719 4.96252 5.05981 5.06603 5.27173 5.37079 5.46490 5.72330 5.82020 5.88473 5.93321 5.96001 6.06299 6.09359 6.16715 6.21228 6.23050 6.33790 6.40026 6.43942 6.48801 6.55783 6.59012 6.63646 6.72537 6.77045 6.87215 7.06228 7.09319 7.23714 7.27066 7.55793 7.66178 7.81372 8.04391 8.33099 8.47310 8.77116 9.08256 9.59024 11.04748 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.029268 B = 0.006631 C = 0.006374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.432022 B = 4221.343048 C = 4391.574414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C 0.217 3.783 4 H 0.010 0.990 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.675 5.675 14 C 0.083 3.917 15 H 0.071 0.929 16 C -0.179 4.179 17 C -0.098 4.098 18 C -0.080 4.080 19 C -0.094 4.094 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.123 4.123 23 H 0.055 0.945 24 H 0.024 0.976 25 H 0.033 0.967 26 H 0.035 0.965 27 H 0.085 0.915 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.640 3.349 -9.712 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C 0.110 3.890 4 H 0.028 0.972 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.305 5.305 14 C -0.028 4.028 15 H 0.089 0.911 16 C -0.238 4.238 17 C -0.136 4.136 18 C -0.099 4.099 19 C -0.131 4.131 20 C -0.173 4.173 21 C -0.160 4.160 22 C -0.160 4.160 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.145 0.855 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.027 2.726 -9.731 12.906 hybrid contribution 1.422 0.769 0.754 1.783 sum -6.606 3.495 -8.977 11.681 Atomic orbital electron populations 1.21961 0.99811 0.98688 1.00271 1.21503 0.91386 0.99696 1.01527 1.19088 0.93873 0.91112 0.84967 0.97242 1.21507 0.91949 1.38231 1.04577 0.92563 1.24911 0.97831 0.95214 0.95876 1.69896 1.34568 1.38890 1.09215 0.86620 0.85995 0.77415 0.78084 1.20901 1.21273 1.19950 1.61016 1.08973 1.31531 1.28955 1.21620 0.95175 0.91220 0.94829 0.91107 1.22512 1.00440 0.98849 1.01978 1.21713 0.98681 0.96246 0.97004 1.21627 0.96864 0.96142 0.95252 1.22393 0.97452 0.97806 0.95458 1.22657 0.99398 0.97160 0.98128 1.22323 0.99049 0.97337 0.97282 1.22263 0.98814 0.99368 0.95600 0.92634 0.95641 0.94820 0.94637 0.89628 0.93017 0.85460 0.93346 0.93902 0.92083 0.92518 0.93267 0.91971 0.90996 0.89942 0.92522 0.92433 0.92879 0.92214 0.92804 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.63 37.15 0.32 -2.71 16 2 C -0.10 -2.42 5.10 -26.73 -0.14 -2.55 16 3 C 0.22 5.18 1.85 -68.86 -0.13 5.06 16 4 H 0.01 0.26 6.81 -51.93 -0.35 -0.09 16 5 C -0.52 -13.88 8.60 -34.44 -0.30 -14.17 16 6 H 0.06 1.48 7.38 -52.49 -0.39 1.09 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.01 11.29 55.43 0.63 -24.39 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.67 -13.19 2.91 -100.95 -0.29 -13.48 16 14 C 0.08 1.42 1.78 -67.71 -0.12 1.30 16 15 H 0.07 1.32 6.48 -51.93 -0.34 0.98 16 16 C -0.18 -3.00 9.14 37.16 0.34 -2.66 16 17 C -0.10 -1.43 4.16 -26.73 -0.11 -1.54 16 18 C -0.08 -1.15 2.46 -89.50 -0.22 -1.37 16 19 C -0.09 -1.44 4.53 -25.07 -0.11 -1.56 16 20 C -0.14 -1.81 6.91 -24.74 -0.17 -1.98 16 21 C -0.12 -1.46 6.83 -25.07 -0.17 -1.63 16 22 C -0.12 -1.51 6.46 -25.62 -0.17 -1.68 16 23 H 0.05 1.03 3.43 -51.93 -0.18 0.86 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.84 7.87 -51.93 -0.41 0.43 16 27 H 0.09 2.29 5.92 -51.93 -0.31 1.99 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.33 6.57 7.71 -39.29 -0.30 6.27 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.18 7.29 -51.93 -0.38 0.80 16 33 H 0.06 0.82 8.00 -51.93 -0.42 0.41 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.94 7.06 -51.93 -0.37 0.58 16 36 H 0.07 1.19 7.04 -51.93 -0.37 0.82 16 37 H 0.08 1.46 5.35 -51.93 -0.28 1.19 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -26.15 314.54 -8.86 -35.00 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.84 Total: 5.92 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -1.07 Total: -23.87 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.33 Total: -37.87 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.15 -8.86 -35.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136959429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.431 kcal (2) G-P(sol) polarization free energy of solvation -26.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds