Wall clock time and date at job start Thu Apr 9 2020 12:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47480 * 2 1 4 4 H 1.09000 * 109.46765 * 53.52880 * 3 2 1 5 5 C 1.50703 * 109.47290 * 173.52511 * 3 2 1 6 6 H 1.07998 * 120.00048 * 119.99852 * 5 3 2 7 7 C 1.37881 * 119.99983 * 300.00314 * 5 3 2 8 8 N 1.31518 * 119.99678 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99744 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46939 * 90.00325 * 9 7 5 11 11 H 1.48502 * 109.47068 * 209.99543 * 9 7 5 12 12 H 1.48494 * 109.47312 * 329.99613 * 9 7 5 13 13 N 1.46901 * 109.47073 * 293.52473 * 3 2 1 14 14 C 1.46899 * 110.99604 * 104.53085 * 13 3 2 15 15 H 1.08996 * 109.47441 * 318.44165 * 14 13 3 16 16 C 1.53006 * 109.47174 * 78.44133 * 14 13 3 17 17 C 1.53002 * 109.47071 * 198.44126 * 14 13 3 18 18 C 1.52995 * 109.47161 * 65.00158 * 17 14 13 19 19 C 1.54270 * 110.03126 * 292.16811 * 18 17 14 20 20 C 1.54886 * 104.19597 * 217.10570 * 19 18 17 21 21 C 1.54888 * 102.75107 * 37.94215 * 20 19 18 22 22 C 1.53874 * 110.03540 * 175.00499 * 18 17 14 23 23 H 1.09003 * 109.47307 * 60.07029 * 1 2 3 24 24 H 1.08997 * 109.47658 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47100 * 300.07746 * 1 2 3 26 26 H 1.09000 * 109.46892 * 240.00154 * 2 1 3 27 27 H 1.09003 * 109.47100 * 120.00406 * 2 1 3 28 28 H 0.96998 * 119.99213 * 179.97438 * 8 7 5 29 29 H 1.00898 * 110.99717 * 228.47975 * 13 3 2 30 30 H 1.08999 * 109.46801 * 60.00226 * 16 14 13 31 31 H 1.08998 * 109.46730 * 179.97438 * 16 14 13 32 32 H 1.08991 * 109.46883 * 299.99723 * 16 14 13 33 33 H 1.09007 * 109.46856 * 305.00040 * 17 14 13 34 34 H 1.08999 * 109.47069 * 184.99973 * 17 14 13 35 35 H 1.08995 * 110.02236 * 53.60645 * 18 17 14 36 36 H 1.09004 * 110.48527 * 335.78131 * 19 18 17 37 37 H 1.09001 * 110.48732 * 98.42757 * 19 18 17 38 38 H 1.08997 * 110.75904 * 279.62755 * 20 19 18 39 39 H 1.09005 * 110.91788 * 156.32869 * 20 19 18 40 40 H 1.08995 * 110.48766 * 203.37874 * 21 20 19 41 41 H 1.08997 * 110.48760 * 80.73632 * 21 20 19 42 42 H 1.09000 * 110.03403 * 238.57196 * 22 18 17 43 43 H 1.09000 * 110.02917 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5852 1.9886 0.8264 5 6 3.5385 1.4454 0.1602 6 1 4.1625 1.8833 -0.6048 7 6 4.1129 0.8890 1.2834 8 7 3.3529 0.3561 2.2152 9 14 5.9703 0.8921 1.4816 10 1 6.3910 2.1309 2.1841 11 1 6.3853 -0.2923 2.2756 12 1 6.6110 0.8399 0.1431 13 7 1.6821 2.0884 -1.2699 14 6 0.5576 3.0163 -1.0898 15 1 -0.1839 2.5650 -0.4305 16 6 1.0658 4.3193 -0.4695 17 6 -0.0812 3.3132 -2.4481 18 6 -0.6996 2.0323 -3.0117 19 6 0.4107 1.0236 -3.3719 20 6 -0.1016 0.3402 -4.6640 21 6 -0.7749 1.5092 -5.4251 22 6 -1.4533 2.3410 -4.3172 23 1 -0.3634 0.5127 -0.8906 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5150 0.8893 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7570 -0.0356 3.0052 29 1 2.4783 2.5591 -1.6731 30 1 1.8072 4.7706 -1.1289 31 1 0.2314 5.0079 -0.3363 32 1 1.5208 4.1078 0.4981 33 1 0.6807 3.6817 -3.1351 34 1 -0.8575 4.0687 -2.3271 35 1 -1.3805 1.5942 -2.2821 36 1 1.3504 1.5423 -3.5616 37 1 0.5327 0.2900 -2.5750 38 1 -0.8288 -0.4366 -4.4279 39 1 0.7265 -0.0707 -5.2416 40 1 -1.5179 1.1300 -6.1266 41 1 -0.0266 2.1062 -5.9463 42 1 -2.5000 2.0521 -4.2214 43 1 -1.3789 3.4035 -4.5490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136959429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:19 Heat of formation + Delta-G solvation = -47.708705 kcal Electronic energy + Delta-G solvation = -18609.405660 eV Core-core repulsion = 16073.374602 eV Total energy + Delta-G solvation = -2536.031057 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.82452 -37.85077 -35.34134 -33.39022 -31.51312 -29.86141 -29.31367 -27.77253 -25.73096 -24.58455 -21.66901 -21.40970 -21.07878 -20.12746 -18.48349 -17.05857 -16.61089 -16.03405 -15.66300 -15.32595 -14.61366 -14.54517 -14.30375 -13.93426 -13.72041 -13.55271 -13.27420 -13.09355 -13.02470 -12.71929 -12.65417 -12.44415 -11.97833 -11.82203 -11.78902 -11.61530 -11.55461 -11.46405 -11.23881 -11.12431 -10.98849 -10.84572 -10.76018 -10.45232 -8.72280 -8.06934 -6.22009 1.39736 1.41695 1.51058 2.42469 3.18799 3.79098 3.88375 3.99563 4.02766 4.28015 4.45747 4.55970 4.64252 4.69016 4.76065 4.79342 4.87485 4.89595 4.94496 4.98263 5.03005 5.05530 5.14972 5.17046 5.22104 5.29168 5.33657 5.35075 5.41466 5.48258 5.56994 5.61010 5.66156 5.72525 5.80361 5.89016 5.96764 6.06424 6.36365 6.58252 6.93601 7.16802 7.48462 8.95303 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.029268 B = 0.006631 C = 0.006374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.432022 B = 4221.343048 C = 4391.574414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 C 0.228 3.772 4 H -0.025 1.025 5 C -0.539 4.539 6 H 0.055 0.945 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.952 3.048 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.662 5.662 14 C 0.082 3.918 15 H 0.056 0.944 16 C -0.172 4.172 17 C -0.089 4.089 18 C -0.080 4.080 19 C -0.094 4.094 20 C -0.135 4.135 21 C -0.118 4.118 22 C -0.118 4.118 23 H 0.072 0.928 24 H 0.039 0.961 25 H 0.024 0.976 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.259 0.741 29 H 0.326 0.674 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.313 4.217 -11.522 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 C 0.119 3.881 4 H -0.007 1.007 5 C -0.578 4.578 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.779 3.221 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.193 1.193 13 N -0.292 5.292 14 C -0.029 4.029 15 H 0.074 0.926 16 C -0.231 4.231 17 C -0.126 4.126 18 C -0.098 4.098 19 C -0.131 4.131 20 C -0.172 4.172 21 C -0.155 4.155 22 C -0.155 4.155 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.143 0.857 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.709 3.604 -11.557 14.913 hybrid contribution 1.614 0.507 1.320 2.146 sum -7.094 4.111 -10.237 13.116 Atomic orbital electron populations 1.21819 0.97206 0.99797 1.00636 1.21316 0.93697 0.98996 0.99386 1.18816 0.92420 0.91222 0.85609 1.00696 1.21880 0.93461 1.37864 1.04545 0.92641 1.25662 1.01977 0.95045 0.95747 1.70037 1.36188 1.39646 1.09608 0.85645 0.81046 0.77336 0.78106 1.20479 1.21165 1.19320 1.60970 1.09357 1.32436 1.26391 1.21691 0.93908 0.90710 0.96581 0.92614 1.22424 1.01355 0.99149 1.00186 1.21635 0.99100 0.96996 0.94906 1.21605 0.96416 0.95507 0.96321 1.22280 0.97496 0.97572 0.95772 1.22631 0.99615 0.97761 0.97223 1.22305 0.99389 0.96541 0.97287 1.22219 0.98981 1.00175 0.94151 0.90966 0.94159 0.95645 0.95322 0.92988 0.93148 0.85665 0.92486 0.91410 0.95488 0.92059 0.91168 0.92910 0.92347 0.92730 0.92340 0.92312 0.91226 0.91844 0.91798 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 8.63 71.98 0.62 -4.98 16 2 C -0.10 -4.62 5.10 30.59 0.16 -4.46 16 3 C 0.23 11.21 1.85 44.17 0.08 11.29 16 4 H -0.02 -1.37 6.81 -2.39 -0.02 -1.39 16 5 C -0.54 -29.15 8.60 25.60 0.22 -28.93 16 6 H 0.06 2.94 7.38 -2.91 -0.02 2.92 16 7 C 0.01 0.82 5.29 84.66 0.45 1.27 16 8 N -0.92 -53.08 11.29 21.45 0.24 -52.84 16 9 Si 0.95 43.78 29.54 68.60 2.03 45.81 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 N -0.66 -26.11 2.91 -473.29 -1.38 -27.48 16 14 C 0.08 2.75 1.78 44.92 0.08 2.83 16 15 H 0.06 2.06 6.48 -2.39 -0.02 2.05 16 16 C -0.17 -5.66 9.14 71.98 0.66 -5.00 16 17 C -0.09 -2.36 4.16 30.59 0.13 -2.24 16 18 C -0.08 -2.11 2.46 -10.07 -0.02 -2.14 16 19 C -0.09 -2.79 4.53 31.67 0.14 -2.65 16 20 C -0.13 -3.34 6.91 31.88 0.22 -3.12 16 21 C -0.12 -2.44 6.83 31.67 0.22 -2.23 16 22 C -0.12 -2.50 6.46 31.32 0.20 -2.30 16 23 H 0.07 2.68 3.43 -2.39 -0.01 2.67 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.03 1.39 7.87 -2.39 -0.02 1.37 16 27 H 0.05 2.89 5.92 -2.39 -0.01 2.87 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.33 13.11 7.71 -89.70 -0.69 12.41 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.03 1.05 7.29 -2.39 -0.02 1.03 16 33 H 0.06 1.61 8.00 -2.38 -0.02 1.59 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.50 7.06 -2.39 -0.02 1.49 16 36 H 0.06 1.88 7.04 -2.38 -0.02 1.86 16 37 H 0.05 1.92 5.35 -2.39 -0.01 1.91 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.32 7.67 -2.39 -0.02 1.31 16 Total: -1.00 -57.01 314.54 4.31 -52.70 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.27 Total: 24.47 kcal Atomic # 6 Polarization: -45.80 SS G_CDS: 3.15 Total: -42.66 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -1.13 Total: -80.32 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -57.01 4.31 -52.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136959429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.992 kcal (2) G-P(sol) polarization free energy of solvation -57.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds