Wall clock time and date at job start Thu Apr 9 2020 12:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52836 * 1 3 3 H 1.11128 * 106.62141 * 2 1 4 4 C 1.51518 * 111.72659 * 242.93963 * 2 1 3 5 5 C 1.51852 * 115.73912 * 277.81231 * 4 2 1 6 6 C 1.54398 * 108.02185 * 197.58723 * 5 4 2 7 7 C 1.53119 * 111.03523 * 80.04561 * 5 4 2 8 8 C 1.52492 * 112.42898 * 316.31264 * 5 4 2 9 9 C 1.52658 * 110.77430 * 52.63756 * 8 5 4 10 10 C 1.52255 * 110.60098 * 115.94021 * 2 1 3 11 11 H 1.09390 * 109.43965 * 194.76532 * 10 2 1 12 12 N 1.47133 * 109.56474 * 313.91457 * 10 2 1 13 13 C 1.46898 * 110.99835 * 205.00367 * 12 10 2 14 14 C 1.53004 * 109.46964 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.46872 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00424 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99915 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99768 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00026 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47199 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47065 * 120.00702 * 19 17 15 22 22 H 1.48499 * 109.47544 * 240.00151 * 19 17 15 23 23 H 1.08992 * 109.47472 * 304.05934 * 1 2 3 24 24 H 1.08996 * 109.47274 * 64.06426 * 1 2 3 25 25 H 1.09000 * 109.46939 * 184.06086 * 1 2 3 26 26 H 1.10218 * 108.79312 * 40.33186 * 4 2 1 27 27 H 1.10239 * 108.74897 * 155.39166 * 4 2 1 28 28 H 1.08999 * 109.47524 * 181.67436 * 6 5 4 29 29 H 1.09007 * 109.47247 * 301.67916 * 6 5 4 30 30 H 1.08999 * 109.46918 * 61.67839 * 6 5 4 31 31 H 1.09007 * 109.46942 * 294.89863 * 7 5 4 32 32 H 1.08996 * 109.46673 * 54.89530 * 7 5 4 33 33 H 1.08996 * 109.46984 * 174.89793 * 7 5 4 34 34 H 1.09295 * 109.40611 * 292.06577 * 8 5 4 35 35 H 1.09301 * 109.41341 * 173.20792 * 8 5 4 36 36 H 1.09540 * 108.98381 * 179.56526 * 9 8 5 37 37 H 1.08547 * 110.74945 * 60.13025 * 9 8 5 38 38 H 1.00903 * 110.99510 * 328.95457 * 12 10 2 39 39 H 1.09001 * 109.47229 * 299.99670 * 13 12 10 40 40 H 1.08994 * 109.47460 * 59.99490 * 13 12 10 41 41 H 1.08992 * 109.47139 * 299.99906 * 14 13 12 42 42 H 1.09001 * 109.46879 * 59.99878 * 14 13 12 43 43 H 0.97001 * 119.99890 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8462 1.0648 0.0000 4 6 2.0892 -0.6403 -1.2535 5 6 2.1606 -2.1571 -1.2438 6 6 3.1348 -2.5966 -2.3581 7 6 0.7951 -2.7737 -1.5594 8 6 2.6883 -2.7064 0.0773 9 6 1.8960 -2.1414 1.2536 10 6 2.0641 -0.6234 1.2816 11 1 3.1259 -0.3826 1.3874 12 7 1.3374 -0.0751 2.4375 13 6 2.1505 -0.1578 3.6580 14 6 1.3634 0.4211 4.8354 15 6 2.1974 0.3357 6.0877 16 1 3.1894 -0.0894 6.0480 17 6 1.6939 0.8002 7.2843 18 7 0.4857 1.3174 7.3328 19 14 2.7274 0.6936 8.8367 20 1 4.0390 0.0752 8.5167 21 1 2.9436 2.0579 9.3820 22 1 2.0213 -0.1363 9.8455 23 1 -0.3634 0.5755 0.8513 24 1 -0.3633 0.4494 -0.9241 25 1 -0.3633 -1.0251 0.0728 26 1 1.4818 -0.3230 -2.1166 27 1 3.1021 -0.2431 -1.4315 28 1 3.1812 -3.6851 -2.3918 29 1 2.7835 -2.2180 -3.3180 30 1 4.1276 -2.1969 -2.1512 31 1 0.0926 -2.5279 -0.7629 32 1 0.4264 -2.3753 -2.5047 33 1 0.8941 -3.8565 -1.6353 34 1 3.7416 -2.4364 0.1880 35 1 2.6060 -3.7963 0.0764 36 1 2.2933 -2.5600 2.1847 37 1 0.8467 -2.4077 1.1738 38 1 1.0433 0.8742 2.2625 39 1 2.3953 -1.2003 3.8616 40 1 3.0701 0.4112 3.5213 41 1 1.1190 1.4636 4.6316 42 1 0.4436 -0.1476 4.9723 43 1 0.1314 1.6438 8.1747 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156840567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:37 Heat of formation + Delta-G solvation = -59.016028 kcal Electronic energy + Delta-G solvation = -17905.068558 eV Core-core repulsion = 15368.547179 eV Total energy + Delta-G solvation = -2536.521380 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73005 -37.35317 -35.34489 -33.80220 -32.48360 -30.42932 -28.39547 -27.38861 -26.74140 -25.06640 -23.46392 -22.25340 -20.97988 -18.77014 -18.47513 -16.87772 -16.43115 -16.39026 -15.82023 -15.38689 -15.29681 -14.62878 -14.43246 -14.33987 -13.87150 -13.67021 -13.24349 -13.07314 -13.00291 -12.87992 -12.80567 -12.56650 -12.48165 -12.29320 -12.03134 -11.95618 -11.74517 -11.63888 -11.37441 -11.29234 -11.03864 -10.80748 -10.69851 -10.57508 -9.23754 -8.21293 -6.32879 1.39329 1.39919 1.53347 2.39767 3.12008 3.30876 3.66042 3.76481 3.97012 4.17415 4.19374 4.31648 4.38591 4.51619 4.53152 4.58225 4.62630 4.73209 4.81882 4.90888 4.96471 4.98531 5.01571 5.03801 5.10726 5.15041 5.16283 5.20966 5.23291 5.32777 5.37978 5.44825 5.51445 5.57859 5.65792 5.68160 5.70762 5.79888 6.16275 6.32659 6.59003 6.84453 7.36442 8.91114 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.046118 B = 0.004416 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.992935 B = 6338.372262 C = 6620.635322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 H 0.053 0.947 4 C -0.092 4.092 5 C -0.057 4.057 6 C -0.141 4.141 7 C -0.142 4.142 8 C -0.101 4.101 9 C -0.101 4.101 10 C 0.095 3.905 11 H 0.025 0.975 12 N -0.688 5.688 13 C 0.086 3.914 14 C 0.033 3.967 15 C -0.545 4.545 16 H 0.058 0.942 17 C 0.001 3.999 18 N -0.931 5.931 19 Si 0.967 3.033 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.277 1.277 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.037 0.963 37 H 0.065 0.935 38 H 0.336 0.664 39 H 0.054 0.946 40 H 0.012 0.988 41 H -0.010 1.010 42 H -0.006 1.006 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.528 -6.566 -20.293 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 H 0.072 0.928 4 C -0.130 4.130 5 C -0.057 4.057 6 C -0.199 4.199 7 C -0.199 4.199 8 C -0.139 4.139 9 C -0.139 4.139 10 C -0.014 4.014 11 H 0.043 0.957 12 N -0.320 5.320 13 C -0.043 4.043 14 C -0.004 4.004 15 C -0.583 4.583 16 H 0.076 0.924 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.792 3.208 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.155 0.845 39 H 0.072 0.928 40 H 0.030 0.970 41 H 0.009 0.991 42 H 0.012 0.988 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.090 -7.062 -20.067 21.497 hybrid contribution 0.878 0.926 1.137 1.709 sum 3.968 -6.136 -18.931 20.292 Atomic orbital electron populations 1.21757 0.94262 1.02135 1.01159 1.20902 0.96794 0.98722 0.93531 0.92828 1.21222 1.01203 0.94340 0.96262 1.20354 0.96235 0.94394 0.94715 1.22241 0.98407 1.01360 0.97865 1.22008 0.95991 1.00421 1.01451 1.21447 0.98858 1.00156 0.93404 1.21321 1.00846 0.94109 0.97628 1.21405 0.94551 0.95668 0.89776 0.95690 1.60696 1.42287 1.26334 1.02651 1.21778 0.93595 0.99135 0.89753 1.18907 0.94958 0.94208 0.92339 1.21636 1.01805 1.40403 0.94483 0.92382 1.25975 0.96280 0.94617 1.02801 1.70117 1.17733 1.41924 1.27357 0.85365 0.78884 0.78027 0.78554 1.18670 1.20199 1.20237 0.93502 0.91864 0.92477 0.90822 0.92433 0.92278 0.91988 0.92965 0.93011 0.91977 0.92439 0.92558 0.91319 0.94375 0.91615 0.84540 0.92773 0.96968 0.99117 0.98753 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.57 71.93 0.62 -2.58 16 2 C -0.08 -1.91 2.15 -11.58 -0.02 -1.93 16 3 H 0.05 1.28 8.29 -1.24 -0.01 1.27 16 4 C -0.09 -1.75 4.12 29.73 0.12 -1.62 16 5 C -0.06 -1.02 0.71 -52.21 -0.04 -1.06 16 6 C -0.14 -2.07 8.08 72.46 0.59 -1.48 16 7 C -0.14 -2.40 8.02 72.02 0.58 -1.82 16 8 C -0.10 -2.15 4.52 30.31 0.14 -2.02 16 9 C -0.10 -2.80 5.12 30.40 0.16 -2.65 16 10 C 0.10 2.82 2.23 44.54 0.10 2.92 16 11 H 0.03 0.79 7.79 -2.18 -0.02 0.77 16 12 N -0.69 -25.34 5.52 -492.28 -2.72 -28.06 16 13 C 0.09 3.82 5.41 86.30 0.47 4.29 16 14 C 0.03 1.84 5.23 29.85 0.16 1.99 16 15 C -0.54 -32.00 9.11 25.60 0.23 -31.76 16 16 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 17 C 0.00 0.07 5.46 84.65 0.46 0.53 16 18 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 19 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H 0.05 1.27 6.78 -2.39 -0.02 1.25 16 24 H 0.06 1.23 8.05 -2.39 -0.02 1.21 16 25 H 0.06 1.37 4.98 -2.39 -0.01 1.36 16 26 H 0.07 1.21 7.87 -1.73 -0.01 1.19 16 27 H 0.06 1.05 7.94 -1.72 -0.01 1.04 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 0.77 8.09 -2.39 -0.02 0.75 16 31 H 0.05 1.01 4.76 -2.38 -0.01 1.00 16 32 H 0.06 0.91 8.08 -2.39 -0.02 0.89 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.22 8.11 -2.23 -0.02 1.20 16 35 H 0.07 1.35 8.13 -2.23 -0.02 1.33 16 36 H 0.04 1.20 7.34 -2.10 -0.02 1.18 16 37 H 0.07 1.89 6.20 -2.63 -0.02 1.87 16 38 H 0.34 12.15 7.42 -89.69 -0.67 11.48 16 39 H 0.05 2.42 7.29 -2.39 -0.02 2.40 16 40 H 0.01 0.54 8.04 -2.39 -0.02 0.52 16 41 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 42 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -63.71 320.32 3.45 -60.26 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.31 Total: 15.43 kcal Atomic # 6 Polarization: -40.74 SS G_CDS: 3.55 Total: -37.19 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -2.43 Total: -85.56 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -63.71 3.45 -60.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156840567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.239 kcal (2) G-P(sol) polarization free energy of solvation -63.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds