Wall clock time and date at job start Thu Apr 9 2020 12:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47482 * 120.00247 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 9 9 C 1.52997 * 109.46817 * 60.00194 * 8 5 4 10 10 C 1.52999 * 109.46961 * 240.00608 * 2 1 3 11 11 H 1.09002 * 109.46716 * 299.99630 * 10 2 1 12 12 N 1.46898 * 109.47548 * 59.99531 * 10 2 1 13 13 C 1.46901 * 111.00188 * 204.99995 * 12 10 2 14 14 C 1.53003 * 109.47032 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.47020 * 180.02562 * 14 13 12 16 16 H 1.08009 * 120.00268 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00257 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00060 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99566 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47067 * 90.00507 * 19 17 15 21 21 H 1.48499 * 109.46653 * 210.00151 * 19 17 15 22 22 H 1.48500 * 109.47163 * 330.00357 * 19 17 15 23 23 H 1.09001 * 109.47066 * 299.99922 * 1 2 3 24 24 H 1.08996 * 109.47747 * 59.99588 * 1 2 3 25 25 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 27 27 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 28 28 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 29 29 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.46870 * 299.99783 * 6 5 4 31 31 H 1.09002 * 109.47508 * 59.99571 * 7 5 4 32 32 H 1.09000 * 109.47437 * 180.02562 * 7 5 4 33 33 H 1.09001 * 109.47109 * 299.99380 * 7 5 4 34 34 H 1.08993 * 109.47662 * 180.02562 * 8 5 4 35 35 H 1.09002 * 109.47075 * 300.00932 * 8 5 4 36 36 H 1.09002 * 109.47153 * 60.00231 * 9 8 5 37 37 H 1.09001 * 109.47289 * 180.02562 * 9 8 5 38 38 H 1.00897 * 110.99635 * 328.95767 * 12 10 2 39 39 H 1.08997 * 109.47146 * 300.00477 * 13 12 10 40 40 H 1.09006 * 109.46899 * 60.00327 * 13 12 10 41 41 H 1.08996 * 109.47037 * 300.00624 * 14 13 12 42 42 H 1.08997 * 109.46805 * 60.00733 * 14 13 12 43 43 H 0.97002 * 119.99907 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2494 6 6 4.0795 0.7220 1.2498 7 6 4.0801 -1.4425 2.4983 8 6 4.0805 -1.4415 0.0001 9 6 3.5704 -0.7203 -1.2490 10 6 2.0399 -0.7211 -1.2493 11 1 1.6765 -1.7488 -1.2493 12 7 1.5502 -0.0286 -2.4487 13 6 1.4874 -0.9437 -3.5962 14 6 0.9735 -0.1881 -4.8235 15 6 0.9085 -1.1270 -6.0004 16 1 1.2046 -2.1593 -5.8849 17 6 0.4722 -0.6680 -7.2252 18 7 0.4150 -1.4875 -8.2522 19 14 -0.0392 1.1175 -7.4252 20 1 1.1402 1.9289 -7.8201 21 1 -1.0836 1.2184 -8.4760 22 1 -0.5805 1.6245 -6.1387 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6767 -1.7490 1.2492 27 1 1.6767 -0.2074 2.1392 28 1 3.7158 1.2355 2.1397 29 1 5.1695 0.7224 1.2504 30 1 3.7161 1.2358 0.3598 31 1 3.7171 -2.4703 2.4976 32 1 5.1701 -1.4417 2.4987 33 1 3.7164 -0.9293 3.3885 34 1 5.1704 -1.4415 0.0004 35 1 3.7175 -2.4693 -0.0002 36 1 3.9334 0.3075 -1.2488 37 1 3.9337 -1.2340 -2.1391 38 1 0.6526 0.3993 -2.2779 39 1 2.4827 -1.3374 -3.8018 40 1 0.8109 -1.7673 -3.3675 41 1 -0.0219 0.2052 -4.6174 42 1 1.6496 0.6356 -5.0523 43 1 0.1076 -1.1646 -9.1137 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156840700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:40 Heat of formation + Delta-G solvation = -39.809898 kcal Electronic energy + Delta-G solvation = -17937.312912 eV Core-core repulsion = 15401.624373 eV Total energy + Delta-G solvation = -2535.688539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.92304 -36.09188 -33.59053 -32.41803 -31.34411 -29.13234 -27.44397 -26.68478 -25.42619 -23.52095 -21.72768 -20.36610 -19.97144 -18.43621 -16.73459 -15.69416 -15.05666 -14.95396 -14.59512 -14.18512 -13.91391 -13.57459 -13.30545 -12.77856 -12.64047 -12.54946 -12.33990 -12.17135 -11.89917 -11.82737 -11.70444 -11.35706 -11.10565 -11.01234 -10.88490 -10.75531 -10.34420 -10.23114 -9.98371 -9.86220 -9.71730 -9.54437 -9.18672 -8.50998 -7.84170 -6.01891 -3.99905 3.34785 3.41330 3.46445 4.47140 4.48635 4.57002 4.67879 4.87352 4.98343 5.12682 5.22350 5.32840 5.39363 5.47877 5.48575 5.56578 5.59325 5.66503 5.70942 5.79559 5.82683 5.86877 5.91848 6.00236 6.04087 6.12122 6.15108 6.23831 6.26534 6.33051 6.34558 6.42709 6.46763 6.64870 6.84963 7.21172 7.43539 7.68723 7.82808 7.99641 8.56471 9.02462 9.60786 11.11556 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.041529 B = 0.004747 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.062800 B = 5896.656777 C = 6101.571972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.099 4.099 5 C -0.065 4.065 6 C -0.145 4.145 7 C -0.141 4.141 8 C -0.107 4.107 9 C -0.109 4.109 10 C 0.094 3.906 11 H 0.038 0.962 12 N -0.694 5.694 13 C 0.075 3.925 14 C -0.010 4.010 15 C -0.520 4.520 16 H 0.070 0.930 17 C 0.067 3.933 18 N -0.905 5.905 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.265 1.265 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.335 0.665 39 H 0.063 0.937 40 H 0.019 0.981 41 H 0.012 0.988 42 H 0.020 0.980 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.872 2.929 21.617 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.137 4.137 5 C -0.065 4.065 6 C -0.202 4.202 7 C -0.198 4.198 8 C -0.146 4.146 9 C -0.147 4.147 10 C -0.017 4.017 11 H 0.056 0.944 12 N -0.326 5.326 13 C -0.054 4.054 14 C -0.048 4.048 15 C -0.559 4.559 16 H 0.088 0.912 17 C -0.134 4.134 18 N -0.544 5.544 19 Si 0.710 3.290 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.190 1.190 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.155 0.845 39 H 0.081 0.919 40 H 0.038 0.962 41 H 0.030 0.970 42 H 0.039 0.961 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.430 3.163 21.246 22.156 hybrid contribution -1.074 0.259 -0.100 1.109 sum 4.357 3.422 21.146 21.859 Atomic orbital electron populations 1.21902 0.95647 1.01782 1.01740 1.21328 0.95068 1.00551 0.94410 0.90214 1.21608 0.94345 1.00471 0.97255 1.20537 0.95219 0.95727 0.95039 1.21977 1.00575 0.95655 1.02011 1.21866 1.00781 1.00090 0.97066 1.21602 0.99976 0.98993 0.93981 1.21573 0.94989 1.01229 0.96911 1.21492 0.95172 0.95680 0.89310 0.94441 1.60662 1.33218 1.34364 1.04368 1.21968 0.99982 0.93337 0.90066 1.19544 0.95669 0.96539 0.93019 1.21086 1.44104 0.97737 0.92930 0.91171 1.25009 0.95050 0.97606 0.95773 1.69919 1.47897 1.35358 1.01225 0.86731 0.78615 0.85670 0.77969 1.20248 1.21532 1.19010 0.92683 0.92191 0.92871 0.92167 0.92162 0.93174 0.93017 0.91482 0.92843 0.92819 0.92944 0.92137 0.92301 0.91168 0.91920 0.84530 0.91862 0.96227 0.96998 0.96146 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.96 37.15 0.33 -1.39 16 2 C -0.09 -1.11 2.11 -90.63 -0.19 -1.30 16 3 H 0.08 0.96 6.43 -51.93 -0.33 0.62 16 4 C -0.10 -1.00 4.01 -26.73 -0.11 -1.10 16 5 C -0.07 -0.63 0.77 -154.51 -0.12 -0.75 16 6 C -0.15 -1.38 7.78 37.16 0.29 -1.09 16 7 C -0.14 -1.18 8.47 37.16 0.31 -0.87 16 8 C -0.11 -1.18 4.73 -26.73 -0.13 -1.31 16 9 C -0.11 -1.46 5.15 -26.70 -0.14 -1.60 16 10 C 0.09 1.33 1.97 -67.69 -0.13 1.20 16 11 H 0.04 0.58 7.80 -51.93 -0.40 0.17 16 12 N -0.69 -11.92 6.31 -106.69 -0.67 -12.60 16 13 C 0.07 1.55 5.42 -3.82 -0.02 1.53 16 14 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 15 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 16 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 19 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.72 6.21 -51.93 -0.32 0.39 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.71 4.81 -51.93 -0.25 0.46 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.96 6.43 -51.93 -0.33 0.62 16 37 H 0.06 0.94 7.46 -51.93 -0.39 0.55 16 38 H 0.33 5.51 6.16 -39.29 -0.24 5.27 16 39 H 0.06 1.35 7.44 -51.93 -0.39 0.96 16 40 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 41 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 42 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 318.72 15.07 4.80 4.80 Total: -1.00 -30.17 318.72 -8.30 -38.46 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.08 Total: -0.01 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -0.45 Total: -20.65 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.10 Total: -40.17 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.17 -8.30 -38.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156840700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.346 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds