Wall clock time and date at job start Thu Apr 9 2020 12:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47482 * 120.00247 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 9 9 C 1.52997 * 109.46817 * 60.00194 * 8 5 4 10 10 C 1.52999 * 109.46961 * 240.00608 * 2 1 3 11 11 H 1.09002 * 109.46716 * 299.99630 * 10 2 1 12 12 N 1.46898 * 109.47548 * 59.99531 * 10 2 1 13 13 C 1.46901 * 111.00188 * 204.99995 * 12 10 2 14 14 C 1.53003 * 109.47032 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.47020 * 180.02562 * 14 13 12 16 16 H 1.08009 * 120.00268 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00257 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00060 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99566 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47067 * 90.00507 * 19 17 15 21 21 H 1.48499 * 109.46653 * 210.00151 * 19 17 15 22 22 H 1.48500 * 109.47163 * 330.00357 * 19 17 15 23 23 H 1.09001 * 109.47066 * 299.99922 * 1 2 3 24 24 H 1.08996 * 109.47747 * 59.99588 * 1 2 3 25 25 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 27 27 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 28 28 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 29 29 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.46870 * 299.99783 * 6 5 4 31 31 H 1.09002 * 109.47508 * 59.99571 * 7 5 4 32 32 H 1.09000 * 109.47437 * 180.02562 * 7 5 4 33 33 H 1.09001 * 109.47109 * 299.99380 * 7 5 4 34 34 H 1.08993 * 109.47662 * 180.02562 * 8 5 4 35 35 H 1.09002 * 109.47075 * 300.00932 * 8 5 4 36 36 H 1.09002 * 109.47153 * 60.00231 * 9 8 5 37 37 H 1.09001 * 109.47289 * 180.02562 * 9 8 5 38 38 H 1.00897 * 110.99635 * 328.95767 * 12 10 2 39 39 H 1.08997 * 109.47146 * 300.00477 * 13 12 10 40 40 H 1.09006 * 109.46899 * 60.00327 * 13 12 10 41 41 H 1.08996 * 109.47037 * 300.00624 * 14 13 12 42 42 H 1.08997 * 109.46805 * 60.00733 * 14 13 12 43 43 H 0.97002 * 119.99907 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2494 6 6 4.0795 0.7220 1.2498 7 6 4.0801 -1.4425 2.4983 8 6 4.0805 -1.4415 0.0001 9 6 3.5704 -0.7203 -1.2490 10 6 2.0399 -0.7211 -1.2493 11 1 1.6765 -1.7488 -1.2493 12 7 1.5502 -0.0286 -2.4487 13 6 1.4874 -0.9437 -3.5962 14 6 0.9735 -0.1881 -4.8235 15 6 0.9085 -1.1270 -6.0004 16 1 1.2046 -2.1593 -5.8849 17 6 0.4722 -0.6680 -7.2252 18 7 0.4150 -1.4875 -8.2522 19 14 -0.0392 1.1175 -7.4252 20 1 1.1402 1.9289 -7.8201 21 1 -1.0836 1.2184 -8.4760 22 1 -0.5805 1.6245 -6.1387 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6767 -1.7490 1.2492 27 1 1.6767 -0.2074 2.1392 28 1 3.7158 1.2355 2.1397 29 1 5.1695 0.7224 1.2504 30 1 3.7161 1.2358 0.3598 31 1 3.7171 -2.4703 2.4976 32 1 5.1701 -1.4417 2.4987 33 1 3.7164 -0.9293 3.3885 34 1 5.1704 -1.4415 0.0004 35 1 3.7175 -2.4693 -0.0002 36 1 3.9334 0.3075 -1.2488 37 1 3.9337 -1.2340 -2.1391 38 1 0.6526 0.3993 -2.2779 39 1 2.4827 -1.3374 -3.8018 40 1 0.8109 -1.7673 -3.3675 41 1 -0.0219 0.2052 -4.6174 42 1 1.6496 0.6356 -5.0523 43 1 0.1076 -1.1646 -9.1137 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156840700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:39 Heat of formation + Delta-G solvation = -57.800261 kcal Electronic energy + Delta-G solvation = -17938.093033 eV Core-core repulsion = 15401.624373 eV Total energy + Delta-G solvation = -2536.468660 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88665 -37.40845 -35.30252 -33.94706 -32.65507 -30.77236 -28.15187 -27.52896 -26.85809 -25.03927 -22.95456 -22.04915 -21.05383 -19.31840 -18.95942 -17.02769 -16.33748 -15.94686 -15.87763 -15.74050 -15.21635 -14.77951 -14.69605 -14.23249 -13.89577 -13.77848 -13.36411 -13.24645 -13.13534 -12.84285 -12.67421 -12.67000 -12.48473 -12.24771 -11.94604 -11.88634 -11.76603 -11.67989 -11.49043 -11.42794 -11.05674 -10.91077 -10.78235 -10.74843 -9.29381 -8.31300 -6.36198 1.36604 1.37847 1.50751 2.35861 3.04191 3.25692 3.69519 3.78148 3.93745 4.07738 4.19764 4.34395 4.41974 4.47895 4.50792 4.55584 4.61401 4.70138 4.75726 4.89148 4.90023 4.92631 4.94026 5.01525 5.08015 5.12070 5.13065 5.18724 5.23646 5.26542 5.31324 5.36590 5.44488 5.48534 5.53686 5.55244 5.62832 5.71358 6.19798 6.26269 6.57923 6.72842 7.28803 8.85559 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.041529 B = 0.004747 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.062800 B = 5896.656777 C = 6101.571972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 H 0.081 0.919 4 C -0.095 4.095 5 C -0.063 4.063 6 C -0.143 4.143 7 C -0.138 4.138 8 C -0.104 4.104 9 C -0.107 4.107 10 C 0.092 3.908 11 H 0.025 0.975 12 N -0.691 5.691 13 C 0.090 3.910 14 C -0.003 4.003 15 C -0.536 4.536 16 H 0.029 0.971 17 C 0.006 3.994 18 N -0.951 5.951 19 Si 0.956 3.044 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.247 1.247 23 H 0.075 0.925 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.341 0.659 39 H 0.051 0.949 40 H 0.011 0.989 41 H 0.019 0.981 42 H 0.021 0.979 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 4.861 23.860 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 H 0.099 0.901 4 C -0.133 4.133 5 C -0.063 4.063 6 C -0.200 4.200 7 C -0.195 4.195 8 C -0.142 4.142 9 C -0.145 4.145 10 C -0.017 4.017 11 H 0.043 0.957 12 N -0.324 5.324 13 C -0.040 4.040 14 C -0.041 4.041 15 C -0.574 4.574 16 H 0.048 0.952 17 C -0.191 4.191 18 N -0.591 5.591 19 Si 0.779 3.221 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.170 1.170 23 H 0.094 0.906 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.162 0.838 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.037 0.963 42 H 0.040 0.960 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.274 5.090 23.518 24.634 hybrid contribution -0.985 -0.441 -0.805 1.346 sum 4.289 4.650 22.713 23.577 Atomic orbital electron populations 1.21904 0.95171 1.01679 1.02275 1.21277 0.95422 1.00349 0.93605 0.90065 1.21599 0.94565 1.00281 0.96881 1.20528 0.94974 0.95960 0.94850 1.21954 1.00869 0.95265 1.01951 1.21831 1.01095 1.00006 0.96561 1.21576 1.00433 0.98615 0.93528 1.21545 0.94413 1.01217 0.97323 1.21597 0.95650 0.95135 0.89348 0.95687 1.60599 1.33661 1.33640 1.04545 1.21618 0.98792 0.93179 0.90365 1.19426 0.96131 0.95754 0.92758 1.21405 1.44002 0.96915 0.95074 0.95244 1.26013 0.94913 1.02976 0.95198 1.70068 1.49080 1.37977 1.02018 0.85577 0.78622 0.79099 0.78819 1.19223 1.20777 1.17039 0.90643 0.93136 0.93310 0.92435 0.90408 0.91953 0.92620 0.92756 0.92831 0.92364 0.91836 0.91356 0.92669 0.91229 0.94283 0.83827 0.93037 0.97122 0.96276 0.96036 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.96 71.98 0.64 -2.48 16 2 C -0.09 -1.88 2.11 -10.80 -0.02 -1.91 16 3 H 0.08 1.76 6.43 -2.39 -0.02 1.75 16 4 C -0.10 -1.68 4.01 30.59 0.12 -1.56 16 5 C -0.06 -1.08 0.77 -52.18 -0.04 -1.12 16 6 C -0.14 -2.36 7.78 71.98 0.56 -1.80 16 7 C -0.14 -1.92 8.47 71.98 0.61 -1.31 16 8 C -0.10 -2.15 4.73 30.59 0.14 -2.01 16 9 C -0.11 -2.84 5.15 30.61 0.16 -2.68 16 10 C 0.09 2.57 1.97 44.93 0.09 2.66 16 11 H 0.03 0.77 7.80 -2.39 -0.02 0.75 16 12 N -0.69 -23.40 6.31 -491.47 -3.10 -26.50 16 13 C 0.09 3.78 5.42 86.30 0.47 4.25 16 14 C 0.00 -0.14 4.30 29.85 0.13 -0.01 16 15 C -0.54 -32.05 9.66 25.60 0.25 -31.80 16 16 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 17 C 0.01 0.35 5.47 84.66 0.46 0.82 16 18 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 19 Si 0.96 45.44 27.47 68.60 1.88 47.32 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.05 1.12 6.21 -2.39 -0.01 1.11 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.05 1.03 4.81 -2.39 -0.01 1.02 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.85 6.43 -2.39 -0.02 1.83 16 37 H 0.04 1.20 7.46 -2.39 -0.02 1.18 16 38 H 0.34 10.82 6.16 -89.70 -0.55 10.27 16 39 H 0.05 2.27 7.44 -2.39 -0.02 2.25 16 40 H 0.01 0.46 8.06 -2.38 -0.02 0.44 16 41 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 42 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 43 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -65.47 318.72 2.99 -62.48 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.34 Total: 16.21 kcal Atomic # 6 Polarization: -42.52 SS G_CDS: 3.57 Total: -38.94 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.80 Total: -87.07 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.32 kcal Total: -65.47 2.99 -62.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156840700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.681 kcal (2) G-P(sol) polarization free energy of solvation -65.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds