Wall clock time and date at job start Thu Apr 9 2020 12:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46896 * 110.99810 * 176.05144 * 12 2 1 14 14 C 1.46898 * 110.99849 * 300.00319 * 12 2 1 15 15 C 1.53002 * 109.47202 * 170.00325 * 14 12 2 16 16 C 1.52997 * 109.47309 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.46924 * 179.97438 * 16 15 14 18 18 C 1.54264 * 110.03277 * 292.90511 * 17 16 15 19 19 C 1.54966 * 104.16028 * 217.13740 * 18 17 16 20 20 C 1.54889 * 102.77741 * 37.88855 * 19 18 17 21 21 C 1.53874 * 110.03163 * 175.68534 * 17 16 15 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.47680 * 59.99996 * 13 12 2 27 27 H 1.09002 * 109.47001 * 180.02562 * 13 12 2 28 28 H 1.09001 * 109.47142 * 300.00084 * 13 12 2 29 29 H 1.09005 * 109.47272 * 289.99844 * 14 12 2 30 30 H 1.08997 * 109.47709 * 50.00013 * 14 12 2 31 31 H 1.09005 * 109.46615 * 299.99921 * 15 14 12 32 32 H 1.08997 * 109.47044 * 59.99281 * 15 14 12 33 33 H 1.09001 * 109.46737 * 299.99232 * 16 15 14 34 34 H 1.08991 * 109.47373 * 59.99823 * 16 15 14 35 35 H 1.09003 * 110.01439 * 54.30045 * 17 16 15 36 36 H 1.08997 * 110.48487 * 335.78973 * 18 17 16 37 37 H 1.08998 * 110.48507 * 98.42537 * 18 17 16 38 38 H 1.09003 * 110.71875 * 279.57330 * 19 18 17 39 39 H 1.08993 * 110.92313 * 156.29777 * 19 18 17 40 40 H 1.09001 * 110.48557 * 203.40565 * 20 19 18 41 41 H 1.09002 * 110.59789 * 80.81347 * 20 19 18 42 42 H 1.08999 * 110.03759 * 238.57034 * 21 17 16 43 43 H 1.09002 * 110.02975 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4850 -0.7943 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8626 -0.9041 3.6342 16 6 1.3714 -0.2106 4.9064 17 6 1.6850 -1.0888 6.1195 18 6 0.8415 -2.3794 6.0697 19 6 0.4759 -2.6508 7.5509 20 6 0.2258 -1.2275 8.1083 21 6 1.2942 -0.3567 7.4153 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7088 1.1611 -3.4845 26 1 3.9186 0.2053 1.1592 27 1 3.8209 -1.3114 2.0860 28 1 3.8030 -1.3529 0.3068 29 1 2.0518 0.9348 2.5280 30 1 0.4722 0.1325 2.3564 31 1 1.3594 -1.8651 3.5273 32 1 2.9390 -1.0628 3.6989 33 1 1.8743 0.7505 5.0136 34 1 0.2950 -0.0522 4.8415 35 1 2.7463 -1.3366 6.1363 36 1 -0.0597 -2.2235 5.4768 37 1 1.4285 -3.2033 5.6637 38 1 1.3055 -3.1293 8.0715 39 1 -0.4260 -3.2584 7.6242 40 1 0.3634 -1.2117 9.1895 41 1 -0.7750 -0.8837 7.8469 42 1 2.1655 -0.2501 8.0614 43 1 0.8807 0.6240 7.1799 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161750277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:56 Heat of formation + Delta-G solvation = -28.458706 kcal Electronic energy + Delta-G solvation = -17510.420374 eV Core-core repulsion = 14975.224059 eV Total energy + Delta-G solvation = -2535.196315 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.64473 -37.07027 -33.71678 -32.25976 -29.37984 -28.79939 -28.38451 -25.78872 -24.34846 -23.19295 -21.09398 -20.42899 -19.63372 -19.06316 -16.24016 -15.86157 -15.37852 -15.04974 -14.67665 -13.97769 -13.63530 -13.45118 -13.37729 -12.85563 -12.28974 -12.16079 -11.95841 -11.34948 -11.22165 -11.19604 -11.05247 -11.01379 -10.92466 -10.77988 -10.69440 -10.49908 -10.35297 -10.30317 -10.06540 -10.00977 -9.97092 -9.55002 -8.80609 -8.37966 -7.08066 -5.97279 -4.01602 3.34354 3.38385 3.41477 4.43087 4.51807 4.58831 4.66256 5.01674 5.22792 5.32706 5.36714 5.41893 5.47298 5.57418 5.59108 5.64528 5.77569 5.79362 5.87810 5.94280 6.00677 6.13707 6.20014 6.21599 6.23783 6.26448 6.35733 6.44342 6.48958 6.66843 6.73783 6.86150 6.92545 7.10783 7.22196 7.58417 7.79799 7.87315 8.27783 8.38711 8.68136 9.05124 9.63174 11.09602 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.051776 B = 0.004044 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.659106 B = 6921.437210 C = 7012.923062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.211 3.789 3 H -0.004 1.004 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.277 1.277 12 N -0.539 5.539 13 C 0.038 3.962 14 C 0.050 3.950 15 C -0.114 4.114 16 C -0.110 4.110 17 C -0.091 4.091 18 C -0.119 4.119 19 C -0.127 4.127 20 C -0.125 4.125 21 C -0.122 4.122 22 H 0.084 0.916 23 H 0.033 0.967 24 H 0.008 0.992 25 H 0.260 0.740 26 H 0.008 0.992 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.016 0.984 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.116 -3.120 17.817 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 H 0.013 0.987 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.214 1.214 10 H -0.204 1.204 11 H -0.202 1.202 12 N -0.263 5.263 13 C -0.111 4.111 14 C -0.078 4.078 15 C -0.152 4.152 16 C -0.149 4.149 17 C -0.110 4.110 18 C -0.157 4.157 19 C -0.164 4.164 20 C -0.162 4.162 21 C -0.160 4.160 22 H 0.103 0.897 23 H 0.053 0.947 24 H 0.027 0.973 25 H 0.070 0.930 26 H 0.027 0.973 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.159 -3.466 17.644 17.982 hybrid contribution 0.660 0.480 -0.896 1.211 sum 0.500 -2.986 16.749 17.020 Atomic orbital electron populations 1.21845 0.97823 0.99574 0.99788 1.19234 0.92288 0.91905 0.86074 0.98652 1.21146 1.30945 1.12224 0.89847 0.91948 1.24942 0.95255 0.95105 0.99004 1.69890 1.36985 1.23094 1.23429 0.86585 0.79054 0.79772 0.82124 1.21383 1.20375 1.20223 1.62124 1.09066 1.52778 1.02342 1.22215 0.89097 0.98880 1.00910 1.22128 1.00622 0.94441 0.90625 1.21622 1.00758 0.99672 0.93098 1.21692 1.01085 0.98203 0.93872 1.21782 0.99700 0.95160 0.94309 1.22466 0.99984 0.97203 0.96036 1.22518 1.00878 0.96628 0.96390 1.22353 0.99137 0.95471 0.99275 1.22236 0.98432 0.98972 0.96336 0.89748 0.94736 0.97302 0.92990 0.97311 0.93764 0.90889 0.96603 0.91034 0.91430 0.92545 0.92484 0.92055 0.91357 0.91255 0.91724 0.91868 0.91893 0.92203 0.91773 0.92256 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.76 37.16 0.33 -3.00 16 2 C 0.21 5.51 2.06 -68.87 -0.14 5.37 16 3 H 0.00 -0.12 8.14 -51.92 -0.42 -0.54 16 4 C -0.50 -14.08 7.93 -34.44 -0.27 -14.35 16 5 H 0.06 1.73 6.39 -52.49 -0.34 1.40 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.94 11.32 55.43 0.63 -25.31 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.54 -12.02 4.62 -236.29 -1.09 -13.12 16 13 C 0.04 0.77 9.05 60.06 0.54 1.31 16 14 C 0.05 0.95 4.77 -3.82 -0.02 0.93 16 15 C -0.11 -1.72 4.99 -26.73 -0.13 -1.85 16 16 C -0.11 -1.38 4.34 -26.73 -0.12 -1.49 16 17 C -0.09 -0.98 2.93 -89.50 -0.26 -1.25 16 18 C -0.12 -1.26 5.50 -25.03 -0.14 -1.40 16 19 C -0.13 -1.15 6.91 -24.70 -0.17 -1.32 16 20 C -0.12 -1.10 6.83 -25.07 -0.17 -1.27 16 21 C -0.12 -1.17 6.46 -25.61 -0.17 -1.33 16 22 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 23 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.01 0.19 6.20 -51.93 -0.32 -0.14 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.04 0.77 6.30 -51.93 -0.33 0.45 16 28 H 0.07 1.58 6.23 -51.93 -0.32 1.26 16 29 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 30 H 0.07 1.38 5.83 -51.93 -0.30 1.07 16 31 H 0.07 1.06 7.48 -51.93 -0.39 0.67 16 32 H 0.06 0.85 6.47 -51.93 -0.34 0.51 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.77 8.02 -51.93 -0.42 0.35 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.78 7.77 -51.93 -0.40 0.38 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 LS Contribution 323.08 15.07 4.87 4.87 Total: -1.00 -28.55 323.08 -9.51 -38.06 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -8.08 Total: -2.95 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -0.82 Total: -18.13 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.47 Total: -38.43 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.55 -9.51 -38.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161750277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.602 kcal (2) G-P(sol) polarization free energy of solvation -28.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds