Wall clock time and date at job start Thu Apr 9 2020 12:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46896 * 110.99810 * 176.05144 * 12 2 1 14 14 C 1.46898 * 110.99849 * 300.00319 * 12 2 1 15 15 C 1.53002 * 109.47202 * 170.00325 * 14 12 2 16 16 C 1.52997 * 109.47309 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.46924 * 179.97438 * 16 15 14 18 18 C 1.54264 * 110.03277 * 292.90511 * 17 16 15 19 19 C 1.54966 * 104.16028 * 217.13740 * 18 17 16 20 20 C 1.54889 * 102.77741 * 37.88855 * 19 18 17 21 21 C 1.53874 * 110.03163 * 175.68534 * 17 16 15 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.47680 * 59.99996 * 13 12 2 27 27 H 1.09002 * 109.47001 * 180.02562 * 13 12 2 28 28 H 1.09001 * 109.47142 * 300.00084 * 13 12 2 29 29 H 1.09005 * 109.47272 * 289.99844 * 14 12 2 30 30 H 1.08997 * 109.47709 * 50.00013 * 14 12 2 31 31 H 1.09005 * 109.46615 * 299.99921 * 15 14 12 32 32 H 1.08997 * 109.47044 * 59.99281 * 15 14 12 33 33 H 1.09001 * 109.46737 * 299.99232 * 16 15 14 34 34 H 1.08991 * 109.47373 * 59.99823 * 16 15 14 35 35 H 1.09003 * 110.01439 * 54.30045 * 17 16 15 36 36 H 1.08997 * 110.48487 * 335.78973 * 18 17 16 37 37 H 1.08998 * 110.48507 * 98.42537 * 18 17 16 38 38 H 1.09003 * 110.71875 * 279.57330 * 19 18 17 39 39 H 1.08993 * 110.92313 * 156.29777 * 19 18 17 40 40 H 1.09001 * 110.48557 * 203.40565 * 20 19 18 41 41 H 1.09002 * 110.59789 * 80.81347 * 20 19 18 42 42 H 1.08999 * 110.03759 * 238.57034 * 21 17 16 43 43 H 1.09002 * 110.02975 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4850 -0.7943 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8626 -0.9041 3.6342 16 6 1.3714 -0.2106 4.9064 17 6 1.6850 -1.0888 6.1195 18 6 0.8415 -2.3794 6.0697 19 6 0.4759 -2.6508 7.5509 20 6 0.2258 -1.2275 8.1083 21 6 1.2942 -0.3567 7.4153 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7088 1.1611 -3.4845 26 1 3.9186 0.2053 1.1592 27 1 3.8209 -1.3114 2.0860 28 1 3.8030 -1.3529 0.3068 29 1 2.0518 0.9348 2.5280 30 1 0.4722 0.1325 2.3564 31 1 1.3594 -1.8651 3.5273 32 1 2.9390 -1.0628 3.6989 33 1 1.8743 0.7505 5.0136 34 1 0.2950 -0.0522 4.8415 35 1 2.7463 -1.3366 6.1363 36 1 -0.0597 -2.2235 5.4768 37 1 1.4285 -3.2033 5.6637 38 1 1.3055 -3.1293 8.0715 39 1 -0.4260 -3.2584 7.6242 40 1 0.3634 -1.2117 9.1895 41 1 -0.7750 -0.8837 7.8469 42 1 2.1655 -0.2501 8.0614 43 1 0.8807 0.6240 7.1799 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161750277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:56 Heat of formation + Delta-G solvation = -43.404209 kcal Electronic energy + Delta-G solvation = -17511.068459 eV Core-core repulsion = 14975.224059 eV Total energy + Delta-G solvation = -2535.844400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.61504 -38.68524 -35.34929 -33.87417 -31.18917 -29.86391 -29.44795 -27.51741 -26.12492 -24.63717 -22.38408 -21.42238 -21.01158 -20.29559 -18.35280 -17.11033 -16.71996 -16.26187 -16.00222 -15.55840 -15.18603 -15.09931 -14.33407 -14.14105 -13.84868 -13.70104 -13.35634 -12.95169 -12.74228 -12.67582 -12.62375 -12.41490 -12.11753 -11.98753 -11.94834 -11.90784 -11.81567 -11.56857 -11.39527 -11.34969 -11.21683 -11.01359 -10.82713 -10.50916 -8.92167 -8.11413 -6.23701 1.42230 1.44510 1.52016 2.42361 3.16199 3.36749 3.77152 3.81837 3.86181 4.13752 4.31343 4.42123 4.51138 4.57843 4.63783 4.70231 4.73538 4.74623 4.83273 4.84117 4.92608 4.94138 5.00941 5.03178 5.06020 5.09787 5.13443 5.19444 5.25881 5.31375 5.37120 5.42204 5.49848 5.53298 5.55436 5.63775 5.73345 5.79987 6.25614 6.41145 6.76954 6.91386 7.45592 8.94656 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.051776 B = 0.004044 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.659106 B = 6921.437210 C = 7012.923062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.214 3.786 3 H -0.042 1.042 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.284 1.284 10 H -0.271 1.271 11 H -0.271 1.271 12 N -0.546 5.546 13 C 0.041 3.959 14 C 0.051 3.949 15 C -0.101 4.101 16 C -0.104 4.104 17 C -0.089 4.089 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.122 4.122 22 H 0.059 0.941 23 H 0.031 0.969 24 H 0.030 0.970 25 H 0.262 0.738 26 H 0.001 0.999 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.011 0.989 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 -4.062 19.062 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.107 3.893 3 H -0.025 1.025 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.209 1.209 10 H -0.196 1.196 11 H -0.196 1.196 12 N -0.270 5.270 13 C -0.107 4.107 14 C -0.077 4.077 15 C -0.138 4.138 16 C -0.142 4.142 17 C -0.107 4.107 18 C -0.160 4.160 19 C -0.162 4.162 20 C -0.162 4.162 21 C -0.159 4.159 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.020 0.980 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.029 0.971 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.282 -4.414 18.912 19.422 hybrid contribution 0.524 0.799 -1.243 1.568 sum 0.807 -3.615 17.669 18.053 Atomic orbital electron populations 1.21659 0.97327 0.99199 0.99644 1.19063 0.92704 0.90006 0.87567 1.02456 1.21432 1.31230 1.12363 0.90998 0.92172 1.25759 0.95348 0.95782 1.02020 1.70023 1.37769 1.24263 1.24126 0.85548 0.78719 0.78687 0.78301 1.20912 1.19618 1.19593 1.62096 1.10189 1.52470 1.02251 1.22210 0.88007 0.98638 1.01871 1.22218 1.00008 0.94926 0.90585 1.21509 1.01037 0.98836 0.92461 1.21630 1.00881 0.98392 0.93287 1.21756 0.99833 0.95049 0.94097 1.22474 0.99467 0.97005 0.97076 1.22516 1.01414 0.96996 0.95239 1.22363 0.98786 0.95011 1.00003 1.22230 0.99060 0.98845 0.95783 0.92177 0.95008 0.95148 0.92921 0.98007 0.90378 0.92415 0.97050 0.91687 0.91795 0.92079 0.92250 0.92217 0.91221 0.92240 0.91992 0.91178 0.91334 0.90921 0.91934 0.91363 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.12 8.76 71.98 0.63 -5.49 16 2 C 0.21 11.36 2.06 44.17 0.09 11.45 16 3 H -0.04 -2.50 8.14 -2.38 -0.02 -2.52 16 4 C -0.52 -29.54 7.93 25.60 0.20 -29.34 16 5 H 0.06 3.36 6.39 -2.91 -0.02 3.34 16 6 C 0.01 0.53 5.30 84.66 0.45 0.98 16 7 N -0.92 -54.26 11.32 21.45 0.24 -54.01 16 8 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.55 -24.30 4.62 -901.47 -4.17 -28.47 16 13 C 0.04 1.66 9.05 127.69 1.16 2.81 16 14 C 0.05 1.88 4.77 86.30 0.41 2.29 16 15 C -0.10 -2.89 4.99 30.59 0.15 -2.74 16 16 C -0.10 -2.42 4.34 30.60 0.13 -2.29 16 17 C -0.09 -1.75 2.93 -10.07 -0.03 -1.78 16 18 C -0.12 -2.38 5.50 31.70 0.17 -2.21 16 19 C -0.12 -1.98 6.91 31.91 0.22 -1.76 16 20 C -0.12 -1.90 6.83 31.67 0.22 -1.69 16 21 C -0.12 -2.05 6.46 31.32 0.20 -1.85 16 22 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 23 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.03 1.36 6.20 -2.39 -0.01 1.35 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.08 2.60 6.30 -2.39 -0.02 2.58 16 28 H 0.06 2.49 6.23 -2.39 -0.01 2.47 16 29 H 0.01 0.43 8.12 -2.38 -0.02 0.41 16 30 H 0.06 2.47 5.83 -2.39 -0.01 2.46 16 31 H 0.06 1.90 7.48 -2.38 -0.02 1.88 16 32 H 0.06 1.70 6.47 -2.39 -0.02 1.68 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.42 8.02 -2.39 -0.02 1.40 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.27 7.77 -2.39 -0.02 1.25 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.08 7.67 -2.39 -0.02 1.06 16 Total: -1.00 -60.74 323.08 3.05 -57.69 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.94 Total: 10.05 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 4.01 Total: -31.61 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -3.93 Total: -82.48 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -60.74 3.05 -57.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161750277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.288 kcal (2) G-P(sol) polarization free energy of solvation -60.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds