Wall clock time and date at job start Thu Apr 9 2020 12:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 110.01855 * 2 1 4 4 C 1.53877 * 110.03009 * 238.61340 * 2 1 3 5 5 C 1.54269 * 106.59595 * 240.66143 * 4 2 1 6 6 C 1.53006 * 110.48193 * 95.06907 * 5 4 2 7 7 C 1.53004 * 110.48616 * 217.57851 * 5 4 2 8 8 C 1.54890 * 104.31608 * 336.32642 * 5 4 2 9 9 C 1.54268 * 110.07726 * 121.42060 * 2 1 3 10 10 H 1.09001 * 110.48318 * 24.24024 * 9 2 1 11 11 N 1.46900 * 110.48454 * 261.72682 * 9 2 1 12 12 C 1.46906 * 110.99709 * 154.99625 * 11 9 2 13 13 C 1.52995 * 109.46869 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47035 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47216 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99990 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00099 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00173 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00105 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46979 * 60.00352 * 19 17 15 21 21 H 1.48501 * 109.47312 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47382 * 300.00413 * 19 17 15 23 23 H 1.09005 * 109.47178 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.47048 * 299.93308 * 1 2 3 25 25 H 1.08996 * 109.47900 * 59.93563 * 1 2 3 26 26 H 1.08999 * 110.03376 * 121.38353 * 4 2 1 27 27 H 1.08995 * 110.07542 * 359.96857 * 4 2 1 28 28 H 1.09001 * 109.47002 * 183.23895 * 6 5 4 29 29 H 1.08993 * 109.46955 * 303.24333 * 6 5 4 30 30 H 1.09000 * 109.47050 * 63.24161 * 6 5 4 31 31 H 1.08998 * 109.47221 * 296.75984 * 7 5 4 32 32 H 1.08993 * 109.46976 * 56.75763 * 7 5 4 33 33 H 1.09001 * 109.46728 * 176.75960 * 7 5 4 34 34 H 1.08995 * 110.75485 * 156.32216 * 8 5 4 35 35 H 1.09002 * 110.75098 * 279.69563 * 8 5 4 36 36 H 1.00893 * 111.00246 * 278.95396 * 11 9 2 37 37 H 1.08997 * 109.47134 * 300.00086 * 12 11 9 38 38 H 1.08998 * 109.46739 * 60.00340 * 12 11 9 39 39 H 1.09005 * 109.47472 * 300.00192 * 13 12 11 40 40 H 1.09001 * 109.47529 * 60.00144 * 13 12 11 41 41 H 1.08992 * 109.47402 * 300.00294 * 14 13 12 42 42 H 1.09007 * 109.46826 * 60.00416 * 14 13 12 43 43 H 0.96998 * 120.00209 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0570 -0.7529 -1.2341 5 6 2.8885 -1.9395 -0.7045 6 6 2.0326 -3.2062 -0.6392 7 6 4.1165 -2.1695 -1.5878 8 6 3.3180 -1.5017 0.7178 9 6 2.0595 -0.7554 1.2365 10 1 1.3160 -1.4665 1.5964 11 7 2.4220 0.1905 2.3004 12 6 2.3540 -0.4507 3.6204 13 6 2.7366 0.5633 4.7002 14 6 2.6664 -0.1047 6.0750 15 6 3.0439 0.8939 7.1386 16 1 3.3071 1.9042 6.8618 17 6 3.0522 0.5183 8.4651 18 7 2.7312 -0.7117 8.8023 19 14 3.5194 1.7563 9.7836 20 1 2.5773 2.9035 9.7416 21 1 3.4514 1.1080 11.1179 22 1 4.9015 2.2417 9.5395 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5128 0.8907 25 1 -0.3635 0.5148 -0.8893 26 1 2.6859 -0.0942 -1.8330 27 1 1.2233 -1.1191 -1.8333 28 1 2.6185 -4.0188 -0.2097 29 1 1.1570 -3.0213 -0.0172 30 1 1.7128 -3.4807 -1.6444 31 1 3.7951 -2.4448 -2.5923 32 1 4.7075 -1.2549 -1.6334 33 1 4.7215 -2.9726 -1.1669 34 1 3.5389 -2.3696 1.3389 35 1 4.1748 -0.8293 0.6726 36 1 3.3358 0.5857 2.1370 37 1 1.3394 -0.8065 3.7997 38 1 3.0451 -1.2930 3.6511 39 1 3.7511 0.9195 4.5211 40 1 2.0452 1.4054 4.6693 41 1 1.6522 -0.4612 6.2544 42 1 3.3582 -0.9465 6.1056 43 1 2.7367 -0.9759 9.7356 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193130216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:25 Heat of formation + Delta-G solvation = -47.365853 kcal Electronic energy + Delta-G solvation = -17397.304472 eV Core-core repulsion = 14861.288281 eV Total energy + Delta-G solvation = -2536.016190 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.64823 -35.78492 -33.63481 -32.70747 -30.98482 -28.29282 -27.50352 -26.64325 -25.68974 -23.25227 -21.94275 -20.45425 -19.53413 -18.80283 -16.29331 -15.68149 -15.39110 -14.78863 -14.42700 -14.11175 -13.69525 -13.60927 -13.37517 -13.20921 -12.64582 -12.42829 -12.25132 -11.99694 -11.87982 -11.67388 -11.51992 -11.14402 -10.94833 -10.77557 -10.72231 -10.63058 -10.53007 -10.49864 -10.37938 -10.23191 -9.64290 -9.27667 -9.01654 -8.30659 -8.00155 -5.96026 -3.98051 3.36185 3.40066 3.43008 4.33764 4.40913 4.49901 4.56747 4.80841 5.12864 5.17538 5.24931 5.35124 5.36887 5.39603 5.43845 5.51893 5.61550 5.65552 5.70833 5.79349 5.82557 5.88239 5.96028 5.98813 6.00961 6.04632 6.13039 6.20103 6.30276 6.33100 6.38129 6.41510 6.78357 6.86254 7.18797 7.46924 7.71583 7.73913 7.88518 8.04670 8.48154 9.09038 9.65679 11.15430 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.042218 B = 0.003834 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.057935 B = 7301.402185 C = 7504.762517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 H 0.076 0.924 4 C -0.112 4.112 5 C -0.068 4.068 6 C -0.137 4.137 7 C -0.138 4.138 8 C -0.145 4.145 9 C 0.088 3.912 10 H 0.079 0.921 11 N -0.684 5.684 12 C 0.060 3.940 13 C -0.107 4.107 14 C 0.022 3.978 15 C -0.519 4.519 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.337 0.663 37 H 0.065 0.935 38 H 0.023 0.977 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.015 0.985 42 H 0.013 0.987 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 -2.863 -21.287 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.069 4.069 6 C -0.194 4.194 7 C -0.195 4.195 8 C -0.184 4.184 9 C -0.022 4.022 10 H 0.098 0.902 11 N -0.313 5.313 12 C -0.068 4.068 13 C -0.145 4.145 14 C -0.015 4.015 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.155 0.845 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.547 -2.702 -21.066 21.295 hybrid contribution 1.087 -0.013 0.816 1.360 sum -0.459 -2.715 -20.250 20.436 Atomic orbital electron populations 1.21819 0.95094 1.01211 1.01578 1.21699 0.95654 0.99762 0.93379 0.90528 1.22361 0.98999 0.96234 0.97358 1.21295 0.95224 0.95205 0.95161 1.21829 0.99689 0.96502 1.01414 1.21835 0.97124 1.01504 0.99072 1.23372 0.98707 1.00595 0.95706 1.22570 0.95767 0.92589 0.91294 0.90236 1.60600 1.34500 1.34339 1.01887 1.22126 1.00429 0.96369 0.87903 1.21623 0.99744 0.97728 0.95417 1.19060 0.97098 0.95782 0.89604 1.21232 1.45684 0.97349 0.91465 0.92741 1.25028 0.95477 0.95235 0.98763 1.69957 1.48971 1.17259 1.17481 0.86659 0.79054 0.81454 0.80832 1.20219 1.21323 1.20281 0.93196 0.92139 0.93274 0.92022 0.91811 0.92820 0.92397 0.92872 0.92904 0.92699 0.92820 0.91687 0.91360 0.84508 0.91693 0.95881 0.93751 0.92630 0.96622 0.96863 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.84 37.15 0.33 -1.15 16 2 C -0.09 -0.94 3.23 -89.50 -0.29 -1.23 16 3 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 4 C -0.11 -1.05 5.59 -25.61 -0.14 -1.20 16 5 C -0.07 -0.65 0.90 -152.84 -0.14 -0.79 16 6 C -0.14 -1.25 8.37 37.16 0.31 -0.94 16 7 C -0.14 -1.18 8.46 37.16 0.31 -0.87 16 8 C -0.14 -1.63 5.40 -24.55 -0.13 -1.76 16 9 C 0.09 1.11 2.36 -65.86 -0.16 0.95 16 10 H 0.08 1.07 7.08 -51.93 -0.37 0.70 16 11 N -0.68 -10.19 6.29 -104.78 -0.66 -10.85 16 12 C 0.06 1.07 5.55 -3.82 -0.02 1.05 16 13 C -0.11 -2.28 5.41 -26.73 -0.14 -2.43 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 15 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 16 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 19 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.55 7.82 -51.93 -0.41 0.15 16 27 H 0.06 0.56 7.38 -51.93 -0.38 0.18 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.56 7.41 -51.93 -0.38 0.17 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.78 8.05 -51.93 -0.42 0.36 16 35 H 0.07 0.77 7.73 -51.93 -0.40 0.37 16 36 H 0.34 4.78 8.24 -39.30 -0.32 4.45 16 37 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.01 0.37 8.14 -51.92 -0.42 -0.06 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -29.69 335.80 -9.06 -38.75 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.56 Total: -1.49 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -0.62 Total: -21.76 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.08 Total: -37.57 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.69 -9.06 -38.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193130216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.612 kcal (2) G-P(sol) polarization free energy of solvation -29.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds