Wall clock time and date at job start Thu Apr 9 2020 12:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46736 * 2 1 4 4 C 1.52996 * 109.46952 * 119.99754 * 2 1 3 5 5 C 1.50702 * 109.47129 * 182.30859 * 4 2 1 6 6 H 1.07999 * 119.99875 * 5.19901 * 5 4 2 7 7 C 1.37872 * 120.00159 * 185.19521 * 5 4 2 8 8 N 1.31513 * 120.00356 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00019 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46991 * 90.00217 * 9 7 5 11 11 H 1.48502 * 109.47058 * 210.00641 * 9 7 5 12 12 H 1.48504 * 109.46795 * 330.00295 * 9 7 5 13 13 N 1.46895 * 109.47186 * 239.99754 * 2 1 3 14 14 C 1.46844 * 111.00187 * 300.98939 * 13 2 1 15 15 C 1.53039 * 109.52264 * 185.83988 * 14 13 2 16 16 C 1.53121 * 109.27839 * 300.81946 * 15 14 13 17 17 H 1.08998 * 109.52360 * 297.75028 * 16 15 14 18 18 C 1.53006 * 109.52049 * 177.55893 * 16 15 14 19 19 C 1.53112 * 109.15905 * 57.65857 * 16 15 14 20 20 C 1.53002 * 109.50252 * 182.40227 * 19 16 15 21 21 C 1.52998 * 109.54074 * 62.30370 * 19 16 15 22 22 C 1.46847 * 111.00032 * 65.20001 * 13 2 1 23 23 H 1.09004 * 109.47176 * 60.00675 * 1 2 3 24 24 H 1.09006 * 109.46736 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47390 * 300.00317 * 1 2 3 26 26 H 1.09004 * 109.47474 * 302.30573 * 4 2 1 27 27 H 1.09001 * 109.47555 * 62.30913 * 4 2 1 28 28 H 0.96993 * 120.00466 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46561 * 65.82636 * 14 13 2 30 30 H 1.08997 * 109.46412 * 305.85314 * 14 13 2 31 31 H 1.09001 * 109.50263 * 60.76496 * 15 14 13 32 32 H 1.09005 * 109.50192 * 180.87761 * 15 14 13 33 33 H 1.09006 * 109.46742 * 60.00247 * 18 16 15 34 34 H 1.09004 * 109.46922 * 179.97438 * 18 16 15 35 35 H 1.08998 * 109.47246 * 300.00027 * 18 16 15 36 36 H 1.09003 * 109.47345 * 179.79859 * 20 19 16 37 37 H 1.08999 * 109.47061 * 299.80250 * 20 19 16 38 38 H 1.09007 * 109.46980 * 59.80181 * 20 19 16 39 39 H 1.09002 * 109.47191 * 300.18028 * 21 19 16 40 40 H 1.09003 * 109.46831 * 60.17550 * 21 19 16 41 41 H 1.09000 * 109.47700 * 180.17408 * 21 19 16 42 42 H 1.08999 * 109.46143 * 294.17478 * 22 13 2 43 43 H 1.08998 * 109.46140 * 54.15364 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5459 -0.6718 1.2782 6 1 4.0821 -0.1049 0.5316 7 6 4.2392 -1.3504 2.2580 8 7 3.5864 -2.0411 3.1670 9 14 6.1059 -1.2897 2.2934 10 1 6.5481 -0.1412 3.1243 11 1 6.6312 -2.5518 2.8736 12 1 6.6222 -1.1281 0.9105 13 7 2.0197 -0.6925 -1.1994 14 6 1.5297 -2.0760 -1.2452 15 6 2.1738 -2.8079 -2.4248 16 6 1.8226 -2.0790 -3.7247 17 1 0.7428 -2.0981 -3.8727 18 6 2.5136 -2.7708 -4.9016 19 6 2.3008 -0.6275 -3.6319 20 6 1.9007 0.1244 -4.9030 21 6 3.8229 -0.5989 -3.4794 22 6 1.6530 0.0413 -2.4173 23 1 -0.3634 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6433 -0.2318 2.1388 27 1 1.7109 -1.7601 1.2289 28 1 4.0741 -2.5188 3.8560 29 1 0.4465 -2.0739 -1.3669 30 1 1.7896 -2.5843 -0.3167 31 1 3.2562 -2.8226 -2.2967 32 1 1.7980 -3.8303 -2.4678 33 1 2.1768 -3.8057 -4.9634 34 1 2.2627 -2.2515 -5.8265 35 1 3.5932 -2.7483 -4.7532 36 1 2.2383 1.1586 -4.8349 37 1 2.3624 -0.3523 -5.7677 38 1 0.8163 0.1026 -5.0119 39 1 4.1075 -1.1359 -2.5745 40 1 4.2837 -1.0754 -4.3447 41 1 4.1619 0.4347 -3.4103 42 1 0.5692 0.0336 -2.5335 43 1 2.0027 1.0708 -2.3402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411526040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:07 Heat of formation + Delta-G solvation = -21.442945 kcal Electronic energy + Delta-G solvation = -18884.606639 eV Core-core repulsion = 16349.714550 eV Total energy + Delta-G solvation = -2534.892089 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73007 -36.23884 -32.67973 -32.24505 -30.60986 -27.84297 -27.08531 -26.94371 -25.50055 -23.16106 -21.84711 -21.71103 -18.62429 -17.74701 -16.10654 -15.39741 -14.97788 -14.64154 -14.22360 -14.05947 -13.83186 -13.19462 -12.96016 -12.61140 -12.45740 -11.98274 -11.87466 -11.67649 -11.63638 -11.51832 -11.27770 -11.05486 -11.02416 -10.81490 -10.53757 -10.49705 -10.34060 -10.12416 -9.95434 -9.67165 -9.58399 -9.05731 -8.89755 -8.22190 -7.31067 -5.85354 -3.82536 3.40938 3.47179 3.52389 4.58588 4.63813 4.91000 5.04014 5.10143 5.42921 5.51863 5.57648 5.64663 5.74233 5.77846 5.84443 5.87424 5.91003 5.96418 5.98231 6.06975 6.12718 6.13626 6.16047 6.25165 6.26902 6.28773 6.42418 6.52191 6.60392 6.62898 6.71484 6.75319 6.87771 7.01747 7.05346 7.61652 7.77361 8.03444 8.11765 8.18274 8.62529 9.23466 9.78847 11.26736 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.007922 C = 0.007038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.503173 B = 3533.763641 C = 3977.345058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.067 0.933 4 C 0.028 3.972 5 C -0.485 4.485 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.887 3.113 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.505 5.505 14 C 0.056 3.944 15 C -0.112 4.112 16 C -0.080 4.080 17 H 0.059 0.941 18 C -0.148 4.148 19 C -0.055 4.055 20 C -0.141 4.141 21 C -0.135 4.135 22 C 0.064 3.936 23 H 0.039 0.961 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.013 0.987 27 H 0.023 0.977 28 H 0.256 0.744 29 H 0.018 0.982 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.022 0.978 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.426 1.124 -14.411 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.524 4.524 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.716 3.284 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.228 5.228 14 C -0.072 4.072 15 C -0.150 4.150 16 C -0.099 4.099 17 H 0.077 0.923 18 C -0.205 4.205 19 C -0.055 4.055 20 C -0.198 4.198 21 C -0.192 4.192 22 C -0.064 4.064 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.871 0.999 -14.233 14.783 hybrid contribution 0.051 0.032 0.093 0.111 sum -3.820 1.031 -14.139 14.682 Atomic orbital electron populations 1.22523 1.00052 1.01212 1.00498 1.21880 0.89850 0.98274 0.92095 0.91516 1.19236 0.96408 0.95508 0.89773 1.21153 0.91419 1.29037 1.10766 0.92140 1.24989 0.97887 0.95972 0.96020 1.69960 1.35058 1.33372 1.16253 0.86665 0.86654 0.77020 0.78073 1.21095 1.21642 1.19869 1.61981 1.58992 1.01195 1.00603 1.22081 0.95304 0.90322 0.99451 1.21691 1.02244 0.97527 0.93529 1.21166 0.98986 0.94547 0.95194 0.92297 1.21925 1.01166 0.99625 0.97774 1.20536 0.96716 0.94350 0.93943 1.21891 1.00602 0.99950 0.97389 1.21841 0.93718 1.01505 1.02112 1.22108 0.96368 0.97485 0.90472 0.94197 0.92989 0.92753 0.96842 0.95840 0.93393 0.96349 0.89156 0.90680 0.92577 0.93322 0.93028 0.92224 0.92940 0.92601 0.93325 0.90270 0.93825 0.93542 0.96011 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 8.50 37.16 0.32 -2.93 16 2 C 0.09 1.79 2.32 -67.72 -0.16 1.63 16 3 H 0.07 1.40 8.08 -51.93 -0.42 0.98 16 4 C 0.03 0.70 4.22 -27.88 -0.12 0.59 16 5 C -0.49 -13.53 8.77 -34.44 -0.30 -13.83 16 6 H 0.06 1.69 7.75 -52.49 -0.41 1.29 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.31 13.29 55.43 0.74 -26.57 16 9 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.50 -9.58 3.57 -226.69 -0.81 -10.39 16 14 C 0.06 1.03 4.63 -3.83 -0.02 1.01 16 15 C -0.11 -1.76 5.03 -26.65 -0.13 -1.89 16 16 C -0.08 -1.08 2.07 -90.50 -0.19 -1.27 16 17 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 18 C -0.15 -1.71 8.49 37.16 0.32 -1.39 16 19 C -0.06 -0.76 0.54 -154.43 -0.08 -0.85 16 20 C -0.14 -1.63 8.18 37.16 0.30 -1.32 16 21 C -0.13 -2.00 7.62 37.16 0.28 -1.71 16 22 C 0.06 1.02 3.75 -3.83 -0.01 1.01 16 23 H 0.04 0.63 6.66 -51.93 -0.35 0.28 16 24 H 0.05 0.92 6.52 -51.93 -0.34 0.58 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.02 0.63 6.18 -51.93 -0.32 0.31 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.02 0.32 6.62 -51.93 -0.34 -0.02 16 30 H 0.09 1.94 5.99 -51.93 -0.31 1.63 16 31 H 0.07 1.28 6.58 -51.93 -0.34 0.94 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.54 6.52 -51.93 -0.34 0.20 16 35 H 0.06 0.71 6.38 -51.93 -0.33 0.37 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.59 6.52 -51.93 -0.34 0.25 16 38 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 39 H 0.08 1.40 6.01 -51.93 -0.31 1.09 16 40 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.02 0.34 6.73 -51.93 -0.35 -0.01 16 43 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 LS Contribution 311.75 15.07 4.70 4.70 Total: -1.00 -28.85 311.75 -8.06 -36.90 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.77 Total: -2.13 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 0.11 Total: -19.62 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.07 Total: -36.96 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.85 -8.06 -36.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411526040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.460 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds