Wall clock time and date at job start Thu Apr 9 2020 12:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47302 * 2 1 4 4 C 1.53002 * 109.47182 * 239.99680 * 2 1 3 5 5 C 1.50703 * 109.47256 * 176.85534 * 4 2 1 6 6 H 1.08000 * 120.00058 * 355.37323 * 5 4 2 7 7 C 1.37874 * 119.99970 * 175.37570 * 5 4 2 8 8 N 1.31515 * 120.00067 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00186 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.46753 * 90.00127 * 9 7 5 11 11 H 1.48500 * 109.46711 * 330.00396 * 9 7 5 12 12 H 1.48497 * 109.47340 * 210.00517 * 9 7 5 13 13 N 1.46899 * 109.47389 * 119.99980 * 2 1 3 14 14 C 1.46850 * 110.99972 * 58.65026 * 13 2 1 15 15 C 1.53036 * 109.52623 * 174.16040 * 14 13 2 16 16 C 1.53122 * 109.27460 * 59.17728 * 15 14 13 17 17 H 1.09008 * 109.52252 * 62.25618 * 16 15 14 18 18 C 1.53007 * 109.52151 * 182.37516 * 16 15 14 19 19 C 1.53111 * 109.16669 * 302.34713 * 16 15 14 20 20 C 1.52992 * 109.50747 * 177.59283 * 19 16 15 21 21 C 1.52996 * 109.50264 * 297.67703 * 19 16 15 22 22 C 1.46845 * 110.99941 * 294.44566 * 13 2 1 23 23 H 1.08990 * 109.47241 * 60.00142 * 1 2 3 24 24 H 1.09005 * 109.46797 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46604 * 299.99689 * 1 2 3 26 26 H 1.09000 * 109.46804 * 56.85893 * 4 2 1 27 27 H 1.08994 * 109.47761 * 296.86014 * 4 2 1 28 28 H 0.96997 * 119.99954 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46340 * 294.18154 * 14 13 2 30 30 H 1.09003 * 109.46345 * 54.15502 * 14 13 2 31 31 H 1.08996 * 109.50756 * 179.11576 * 15 14 13 32 32 H 1.08999 * 109.50243 * 299.20316 * 15 14 13 33 33 H 1.09000 * 109.46544 * 60.00536 * 18 16 15 34 34 H 1.08995 * 109.46801 * 180.02562 * 18 16 15 35 35 H 1.08992 * 109.47013 * 300.00269 * 18 16 15 36 36 H 1.09008 * 109.47202 * 60.00124 * 20 19 16 37 37 H 1.09003 * 109.47520 * 179.97438 * 20 19 16 38 38 H 1.08996 * 109.47209 * 300.00329 * 20 19 16 39 39 H 1.09002 * 109.47431 * 59.99467 * 21 19 16 40 40 H 1.09002 * 109.47349 * 179.97438 * 21 19 16 41 41 H 1.08998 * 109.47155 * 299.99403 * 21 19 16 42 42 H 1.09000 * 109.45911 * 305.84676 * 22 13 2 43 43 H 1.08998 * 109.46747 * 65.82017 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5450 -0.6542 -1.2888 6 1 4.0800 -0.0847 -0.5432 7 6 4.2390 -1.3197 -2.2770 8 7 5.5524 -1.2616 -2.3112 9 14 3.3138 -2.3052 -3.5663 10 1 2.9961 -1.4308 -4.7237 11 1 2.0535 -2.8275 -2.9797 12 1 4.1563 -3.4407 -4.0202 13 7 2.0197 -0.6925 1.1994 14 6 1.5227 -2.0734 1.2496 15 6 2.1666 -2.8062 2.4288 16 6 1.8229 -2.0727 3.7282 17 1 0.7435 -2.0859 3.8795 18 6 2.5126 -2.7665 4.9047 19 6 2.3083 -0.6238 3.6310 20 6 1.9157 0.1328 4.9015 21 6 3.8301 -0.6043 3.4745 22 6 1.6603 0.0457 2.4169 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.6314 -0.2410 -2.1383 27 1 1.7235 -1.7639 -1.2216 28 1 6.0406 -1.7301 -3.0062 29 1 0.4400 -2.0654 1.3744 30 1 1.7775 -2.5851 0.3215 31 1 1.7856 -3.8264 2.4752 32 1 3.2484 -2.8272 2.2973 33 1 3.5919 -2.7508 4.7537 34 1 2.2670 -2.2440 5.8292 35 1 2.1696 -3.7990 4.9693 36 1 2.3747 -0.3465 5.7663 37 1 2.2619 1.1641 4.8320 38 1 0.8315 0.1198 5.0118 39 1 4.1091 -1.1422 2.5684 40 1 4.1751 0.4274 3.4048 41 1 4.2904 -1.0841 4.3382 42 1 2.0149 1.0733 2.3365 43 1 0.5769 0.0438 2.5363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411526046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:09 Heat of formation + Delta-G solvation = -17.031700 kcal Electronic energy + Delta-G solvation = -18897.781325 eV Core-core repulsion = 16363.080522 eV Total energy + Delta-G solvation = -2534.700803 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.77354 -36.33909 -32.62459 -32.26573 -30.82670 -28.19291 -27.29677 -26.92689 -25.57643 -23.05157 -21.74974 -21.67006 -18.66489 -17.75824 -16.53598 -15.49636 -14.99776 -14.69818 -14.14678 -14.01234 -13.86751 -13.24723 -12.89745 -12.75690 -12.45056 -12.27203 -12.06050 -11.87368 -11.64341 -11.57287 -11.32150 -11.16894 -11.13774 -10.81665 -10.63088 -10.45803 -10.35820 -10.03620 -9.79680 -9.64125 -9.53875 -9.40748 -8.94885 -8.39751 -7.37431 -5.88093 -3.81629 3.36657 3.44629 3.46443 4.55237 4.56339 4.90391 5.02781 5.08051 5.40791 5.45718 5.57039 5.63368 5.68479 5.71956 5.77770 5.81899 5.84515 5.92680 5.96259 5.98338 6.06149 6.11935 6.15781 6.22244 6.25553 6.28451 6.41684 6.43660 6.51364 6.60134 6.67987 6.70478 6.74562 6.85751 7.06440 7.18489 7.39073 7.87539 7.94633 8.04950 8.75428 9.25009 9.75051 11.25941 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.028042 B = 0.007568 C = 0.007098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.253288 B = 3699.079617 C = 3944.081537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.096 3.904 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.486 4.486 6 H 0.079 0.921 7 C 0.062 3.938 8 N -0.908 5.908 9 Si 0.870 3.130 10 H -0.280 1.280 11 H -0.268 1.268 12 H -0.290 1.290 13 N -0.503 5.503 14 C 0.056 3.944 15 C -0.113 4.113 16 C -0.080 4.080 17 H 0.058 0.942 18 C -0.148 4.148 19 C -0.055 4.055 20 C -0.141 4.141 21 C -0.135 4.135 22 C 0.065 3.935 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.011 0.989 27 H 0.019 0.981 28 H 0.259 0.741 29 H 0.019 0.981 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.067 0.933 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.095 -0.552 12.657 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.012 4.012 3 H 0.091 0.909 4 C -0.047 4.047 5 C -0.525 4.525 6 H 0.097 0.903 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.699 3.301 10 H -0.207 1.207 11 H -0.193 1.193 12 H -0.217 1.217 13 N -0.226 5.226 14 C -0.072 4.072 15 C -0.151 4.151 16 C -0.098 4.098 17 H 0.076 0.924 18 C -0.205 4.205 19 C -0.055 4.055 20 C -0.198 4.198 21 C -0.192 4.192 22 C -0.063 4.063 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.422 -0.637 12.521 15.104 hybrid contribution -1.366 -0.513 -0.769 1.649 sum -9.787 -1.150 11.752 15.337 Atomic orbital electron populations 1.22560 0.99965 1.01243 1.00841 1.21654 0.89694 0.98454 0.91363 0.90866 1.19742 0.98058 0.95369 0.91575 1.21036 0.89064 1.30301 1.12055 0.90279 1.24997 0.94636 0.96579 0.97539 1.69910 1.06069 1.44407 1.34462 0.86939 0.80227 0.80362 0.82611 1.20662 1.19343 1.21664 1.61938 1.58942 1.01088 1.00624 1.22072 0.95308 0.90472 0.99303 1.21694 1.02492 0.97416 0.93485 1.21160 0.98920 0.94615 0.95151 0.92361 1.21921 1.01284 0.99564 0.97743 1.20536 0.96903 0.94239 0.93857 1.21889 1.00544 1.00006 0.97398 1.21841 0.93426 1.01682 1.02242 1.22106 0.96343 0.97552 0.90293 0.92698 0.93017 0.93766 0.97054 0.96274 0.93142 0.96268 0.89753 0.92582 0.90397 0.92108 0.92993 0.93348 0.92555 0.92874 0.93374 0.90089 0.93461 0.93818 0.91482 0.96007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.50 37.16 0.32 -2.78 16 2 C 0.10 1.91 2.31 -67.71 -0.16 1.75 16 3 H 0.07 1.50 8.07 -51.93 -0.42 1.08 16 4 C -0.01 -0.24 3.34 -27.88 -0.09 -0.33 16 5 C -0.49 -13.69 9.34 -34.44 -0.32 -14.01 16 6 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.27 13.96 55.43 0.77 -27.49 16 9 Si 0.87 21.92 27.56 -169.99 -4.69 17.23 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.27 -6.49 6.41 56.52 0.36 -6.12 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 N -0.50 -9.41 3.59 -226.68 -0.81 -10.22 16 14 C 0.06 0.99 4.63 -3.83 -0.02 0.98 16 15 C -0.11 -1.74 5.02 -26.65 -0.13 -1.88 16 16 C -0.08 -1.07 2.06 -90.50 -0.19 -1.25 16 17 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 18 C -0.15 -1.71 8.50 37.16 0.32 -1.39 16 19 C -0.05 -0.76 0.55 -154.43 -0.08 -0.85 16 20 C -0.14 -1.63 8.19 37.15 0.30 -1.33 16 21 C -0.13 -2.06 7.62 37.16 0.28 -1.78 16 22 C 0.07 1.03 3.76 -3.83 -0.01 1.02 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.85 6.51 -51.93 -0.34 0.51 16 25 H 0.04 0.66 6.67 -51.93 -0.35 0.31 16 26 H 0.01 0.27 7.80 -51.93 -0.41 -0.14 16 27 H 0.02 0.46 4.88 -51.93 -0.25 0.20 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.02 0.32 6.61 -51.93 -0.34 -0.02 16 30 H 0.08 1.70 5.99 -51.93 -0.31 1.39 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.34 6.59 -51.93 -0.34 0.99 16 33 H 0.06 0.73 6.38 -51.93 -0.33 0.40 16 34 H 0.05 0.54 6.52 -51.93 -0.34 0.20 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.60 6.51 -51.92 -0.34 0.26 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 1.49 6.02 -51.93 -0.31 1.18 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.04 0.59 6.39 -51.93 -0.33 0.26 16 42 H 0.07 1.08 8.07 -51.93 -0.42 0.66 16 43 H 0.02 0.33 6.74 -51.93 -0.35 -0.02 16 LS Contribution 308.06 15.07 4.64 4.64 Total: -1.00 -29.52 308.06 -7.70 -37.22 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -7.73 Total: -1.24 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 0.11 Total: -20.14 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.04 Total: -37.72 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.69 Total: 17.23 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.52 -7.70 -37.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411526046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.187 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds