Wall clock time and date at job start Thu Apr 9 2020 12:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47302 * 2 1 4 4 C 1.53002 * 109.47182 * 239.99680 * 2 1 3 5 5 C 1.50703 * 109.47256 * 176.85534 * 4 2 1 6 6 H 1.08000 * 120.00058 * 355.37323 * 5 4 2 7 7 C 1.37874 * 119.99970 * 175.37570 * 5 4 2 8 8 N 1.31515 * 120.00067 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00186 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.46753 * 90.00127 * 9 7 5 11 11 H 1.48500 * 109.46711 * 330.00396 * 9 7 5 12 12 H 1.48497 * 109.47340 * 210.00517 * 9 7 5 13 13 N 1.46899 * 109.47389 * 119.99980 * 2 1 3 14 14 C 1.46850 * 110.99972 * 58.65026 * 13 2 1 15 15 C 1.53036 * 109.52623 * 174.16040 * 14 13 2 16 16 C 1.53122 * 109.27460 * 59.17728 * 15 14 13 17 17 H 1.09008 * 109.52252 * 62.25618 * 16 15 14 18 18 C 1.53007 * 109.52151 * 182.37516 * 16 15 14 19 19 C 1.53111 * 109.16669 * 302.34713 * 16 15 14 20 20 C 1.52992 * 109.50747 * 177.59283 * 19 16 15 21 21 C 1.52996 * 109.50264 * 297.67703 * 19 16 15 22 22 C 1.46845 * 110.99941 * 294.44566 * 13 2 1 23 23 H 1.08990 * 109.47241 * 60.00142 * 1 2 3 24 24 H 1.09005 * 109.46797 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46604 * 299.99689 * 1 2 3 26 26 H 1.09000 * 109.46804 * 56.85893 * 4 2 1 27 27 H 1.08994 * 109.47761 * 296.86014 * 4 2 1 28 28 H 0.96997 * 119.99954 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46340 * 294.18154 * 14 13 2 30 30 H 1.09003 * 109.46345 * 54.15502 * 14 13 2 31 31 H 1.08996 * 109.50756 * 179.11576 * 15 14 13 32 32 H 1.08999 * 109.50243 * 299.20316 * 15 14 13 33 33 H 1.09000 * 109.46544 * 60.00536 * 18 16 15 34 34 H 1.08995 * 109.46801 * 180.02562 * 18 16 15 35 35 H 1.08992 * 109.47013 * 300.00269 * 18 16 15 36 36 H 1.09008 * 109.47202 * 60.00124 * 20 19 16 37 37 H 1.09003 * 109.47520 * 179.97438 * 20 19 16 38 38 H 1.08996 * 109.47209 * 300.00329 * 20 19 16 39 39 H 1.09002 * 109.47431 * 59.99467 * 21 19 16 40 40 H 1.09002 * 109.47349 * 179.97438 * 21 19 16 41 41 H 1.08998 * 109.47155 * 299.99403 * 21 19 16 42 42 H 1.09000 * 109.45911 * 305.84676 * 22 13 2 43 43 H 1.08998 * 109.46747 * 65.82017 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5450 -0.6542 -1.2888 6 1 4.0800 -0.0847 -0.5432 7 6 4.2390 -1.3197 -2.2770 8 7 5.5524 -1.2616 -2.3112 9 14 3.3138 -2.3052 -3.5663 10 1 2.9961 -1.4308 -4.7237 11 1 2.0535 -2.8275 -2.9797 12 1 4.1563 -3.4407 -4.0202 13 7 2.0197 -0.6925 1.1994 14 6 1.5227 -2.0734 1.2496 15 6 2.1666 -2.8062 2.4288 16 6 1.8229 -2.0727 3.7282 17 1 0.7435 -2.0859 3.8795 18 6 2.5126 -2.7665 4.9047 19 6 2.3083 -0.6238 3.6310 20 6 1.9157 0.1328 4.9015 21 6 3.8301 -0.6043 3.4745 22 6 1.6603 0.0457 2.4169 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.6314 -0.2410 -2.1383 27 1 1.7235 -1.7639 -1.2216 28 1 6.0406 -1.7301 -3.0062 29 1 0.4400 -2.0654 1.3744 30 1 1.7775 -2.5851 0.3215 31 1 1.7856 -3.8264 2.4752 32 1 3.2484 -2.8272 2.2973 33 1 3.5919 -2.7508 4.7537 34 1 2.2670 -2.2440 5.8292 35 1 2.1696 -3.7990 4.9693 36 1 2.3747 -0.3465 5.7663 37 1 2.2619 1.1641 4.8320 38 1 0.8315 0.1198 5.0118 39 1 4.1091 -1.1422 2.5684 40 1 4.1751 0.4274 3.4048 41 1 4.2904 -1.0841 4.3382 42 1 2.0149 1.0733 2.3365 43 1 0.5769 0.0438 2.5363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411526046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:08 Heat of formation + Delta-G solvation = -34.342748 kcal Electronic energy + Delta-G solvation = -18898.531988 eV Core-core repulsion = 16363.080522 eV Total energy + Delta-G solvation = -2535.451466 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04282 -37.74830 -34.72088 -33.46551 -32.41236 -29.84926 -28.62600 -28.04537 -26.83652 -24.76304 -23.26784 -22.92505 -20.22437 -18.93316 -18.75882 -16.93413 -16.44058 -16.10054 -15.76383 -15.40565 -14.98310 -14.72229 -14.49208 -14.12111 -13.97067 -13.70281 -13.59784 -13.21415 -12.83392 -12.72995 -12.66611 -12.56215 -12.48960 -12.24114 -12.15057 -11.90503 -11.76330 -11.62494 -11.31051 -11.20584 -11.15442 -10.83781 -10.69576 -10.65116 -8.76494 -8.15909 -6.14109 1.35869 1.37639 1.48004 2.42039 3.11663 3.27073 3.78684 3.90807 3.94369 4.14890 4.30765 4.39124 4.43302 4.51362 4.55487 4.61478 4.67426 4.72716 4.81568 4.85584 4.92519 4.95466 4.99477 5.03147 5.11953 5.12919 5.15738 5.19787 5.23871 5.24887 5.30840 5.34448 5.45885 5.54039 5.56324 5.64970 5.76912 5.79802 6.42591 6.54536 6.61945 6.93614 7.45916 9.01615 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.028042 B = 0.007568 C = 0.007098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.253288 B = 3699.079617 C = 3944.081537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 H 0.057 0.943 4 C -0.006 4.006 5 C -0.483 4.483 6 H 0.034 0.966 7 C -0.002 4.002 8 N -0.958 5.958 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.249 1.249 12 H -0.290 1.290 13 N -0.529 5.529 14 C 0.059 3.941 15 C -0.111 4.111 16 C -0.074 4.074 17 H 0.072 0.928 18 C -0.144 4.144 19 C -0.054 4.054 20 C -0.134 4.134 21 C -0.129 4.129 22 C 0.067 3.933 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.016 0.984 27 H 0.021 0.979 28 H 0.260 0.740 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.040 0.960 40 H 0.037 0.963 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.881 -1.191 13.951 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.011 4.011 3 H 0.075 0.925 4 C -0.044 4.044 5 C -0.522 4.522 6 H 0.052 0.948 7 C -0.197 4.197 8 N -0.601 5.601 9 Si 0.766 3.234 10 H -0.196 1.196 11 H -0.173 1.173 12 H -0.216 1.216 13 N -0.253 5.253 14 C -0.069 4.069 15 C -0.149 4.149 16 C -0.093 4.093 17 H 0.090 0.910 18 C -0.201 4.201 19 C -0.054 4.054 20 C -0.192 4.192 21 C -0.186 4.186 22 C -0.061 4.061 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.231 -1.266 13.830 17.861 hybrid contribution -0.410 -0.257 -1.130 1.229 sum -11.641 -1.523 12.700 17.295 Atomic orbital electron populations 1.22398 0.96718 1.01931 1.02288 1.21466 0.92201 0.96990 0.90432 0.92501 1.19678 0.94732 0.96068 0.93907 1.21238 0.91604 1.28885 1.10439 0.94791 1.25904 0.95439 0.98098 1.00223 1.70084 1.08088 1.46117 1.35798 0.85806 0.79358 0.78670 0.79615 1.19598 1.17311 1.21611 1.61840 1.60169 1.01909 1.01378 1.22013 0.96397 0.89731 0.98721 1.21671 1.00614 0.98513 0.94080 1.21127 0.99841 0.93772 0.94512 0.90957 1.21882 1.00411 1.00279 0.97522 1.20556 0.95294 0.95195 0.94355 1.21828 1.01550 0.99684 0.96116 1.21757 0.95247 1.00570 1.01029 1.22152 0.97330 0.96892 0.89697 0.91843 0.92588 0.91778 0.96598 0.96047 0.93159 0.94483 0.92980 0.90876 0.93153 0.93139 0.91164 0.92276 0.91152 0.92859 0.91970 0.94080 0.94378 0.92029 0.92437 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.34 8.50 71.98 0.61 -4.73 16 2 C 0.10 3.85 2.31 44.92 0.10 3.95 16 3 H 0.06 2.39 8.07 -2.38 -0.02 2.37 16 4 C -0.01 -0.30 3.34 29.85 0.10 -0.20 16 5 C -0.48 -28.28 9.34 25.60 0.24 -28.04 16 6 H 0.03 2.24 7.99 -2.91 -0.02 2.21 16 7 C 0.00 -0.12 5.47 84.65 0.46 0.34 16 8 N -0.96 -62.02 13.96 21.45 0.30 -61.72 16 9 Si 0.94 45.67 27.56 68.60 1.89 47.56 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.25 -11.23 6.41 99.48 0.64 -10.59 16 12 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 13 N -0.53 -19.91 3.59 -871.09 -3.13 -23.03 16 14 C 0.06 2.05 4.63 86.33 0.40 2.45 16 15 C -0.11 -3.34 5.02 30.65 0.15 -3.18 16 16 C -0.07 -1.80 2.06 -10.71 -0.02 -1.82 16 17 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 18 C -0.14 -2.91 8.50 71.98 0.61 -2.30 16 19 C -0.05 -1.41 0.55 -52.13 -0.03 -1.43 16 20 C -0.13 -2.69 8.19 71.98 0.59 -2.10 16 21 C -0.13 -3.98 7.62 71.98 0.55 -3.43 16 22 C 0.07 2.04 3.76 86.33 0.32 2.37 16 23 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.06 1.67 6.51 -2.38 -0.02 1.65 16 25 H 0.06 1.71 6.67 -2.39 -0.02 1.70 16 26 H 0.02 0.73 7.80 -2.39 -0.02 0.72 16 27 H 0.02 1.01 4.88 -2.39 -0.01 1.00 16 28 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 29 H 0.04 1.14 6.61 -2.39 -0.02 1.13 16 30 H 0.05 2.11 5.99 -2.39 -0.01 2.10 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.05 1.78 6.59 -2.39 -0.02 1.77 16 33 H 0.05 1.12 6.38 -2.39 -0.02 1.11 16 34 H 0.07 1.18 6.52 -2.39 -0.02 1.17 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.23 6.51 -2.38 -0.02 1.21 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.04 1.59 6.02 -2.39 -0.01 1.58 16 40 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.63 6.39 -2.39 -0.02 1.62 16 42 H 0.06 1.83 8.07 -2.39 -0.02 1.81 16 43 H 0.04 1.03 6.74 -2.39 -0.02 1.01 16 Total: -1.00 -66.32 308.06 4.04 -62.28 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.88 Total: 13.04 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 4.09 Total: -38.12 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -2.83 Total: -84.76 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.89 Total: 47.56 kcal Total: -66.32 4.04 -62.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411526046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.937 kcal (2) G-P(sol) polarization free energy of solvation -66.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds