Wall clock time and date at job start Thu Apr 9 2020 12:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46722 * 2 1 4 4 C 1.52994 * 109.47499 * 120.00656 * 2 1 3 5 5 C 1.50695 * 109.47201 * 184.99719 * 4 2 1 6 6 H 1.07997 * 120.00106 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99724 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00473 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99743 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47234 * 89.99843 * 9 7 5 11 11 H 1.48494 * 109.47263 * 210.00279 * 9 7 5 12 12 H 1.48504 * 109.47156 * 330.00373 * 9 7 5 13 13 N 1.46900 * 109.46672 * 240.00811 * 2 1 3 14 14 C 1.46896 * 111.00065 * 84.99589 * 13 2 1 15 15 H 1.08992 * 109.47739 * 324.99842 * 14 13 2 16 16 C 1.53005 * 109.46979 * 85.00226 * 14 13 2 17 17 C 1.52996 * 109.47245 * 59.99554 * 16 14 13 18 18 C 1.52997 * 109.46975 * 60.00405 * 17 16 14 19 19 H 1.09001 * 109.46922 * 59.99912 * 18 17 16 20 20 C 1.53006 * 109.47164 * 179.97438 * 18 17 16 21 21 C 1.52997 * 109.47232 * 299.99763 * 18 17 16 22 22 C 1.52996 * 109.47131 * 59.99874 * 21 18 17 23 23 H 1.09001 * 109.46997 * 60.00426 * 22 21 18 24 24 C 1.52997 * 109.47131 * 180.02562 * 22 21 18 25 25 H 1.09007 * 109.47126 * 299.99069 * 1 2 3 26 26 H 1.08993 * 109.47446 * 59.99527 * 1 2 3 27 27 H 1.09006 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46929 * 305.00213 * 4 2 1 29 29 H 1.09003 * 109.47334 * 64.99405 * 4 2 1 30 30 H 0.97001 * 120.00271 * 179.97438 * 8 7 5 31 31 H 1.00902 * 111.00136 * 321.04152 * 13 2 1 32 32 H 1.09004 * 109.46832 * 299.99674 * 16 14 13 33 33 H 1.09001 * 109.47420 * 180.02562 * 16 14 13 34 34 H 1.09001 * 109.47372 * 300.00032 * 17 16 14 35 35 H 1.09000 * 109.46870 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.47002 * 59.99738 * 20 18 17 37 37 H 1.08993 * 109.46955 * 180.02562 * 20 18 17 38 38 H 1.09000 * 109.47050 * 300.00004 * 20 18 17 39 39 H 1.08996 * 109.46952 * 180.02562 * 21 18 17 40 40 H 1.09001 * 109.46832 * 300.00199 * 21 18 17 41 41 H 1.09002 * 109.47153 * 180.02562 * 24 22 21 42 42 H 1.09001 * 109.47502 * 299.99847 * 24 22 21 43 43 H 1.08998 * 109.47076 * 60.00779 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6150 1.3125 6 1 4.0790 -0.0855 0.5394 7 6 4.2304 -1.1929 2.3580 8 7 3.5766 -1.8373 3.2997 9 14 6.0921 -1.0605 2.4370 10 1 6.4699 0.1622 3.1903 11 1 6.6447 -2.2556 3.1237 12 1 6.6417 -0.9828 1.0596 13 7 2.0196 -0.6923 -1.1996 14 6 2.0823 0.2228 -2.3469 15 1 1.2575 0.9331 -2.2906 16 6 3.4110 0.9811 -2.3224 17 6 4.5687 -0.0159 -2.4014 18 6 4.4632 -0.8180 -3.7000 19 1 4.5098 -0.1389 -4.5513 20 6 5.6214 -1.8147 -3.7794 21 6 3.1346 -1.5764 -3.7246 22 6 1.9768 -0.5793 -3.6455 23 1 2.0233 0.0997 -4.4968 24 6 0.6482 -1.3377 -3.6694 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6055 -0.2620 2.1368 29 1 1.7517 -1.7716 1.2054 30 1 4.0610 -2.2441 4.0350 31 1 1.4495 -1.4978 -1.4102 32 1 3.4861 1.5526 -1.3972 33 1 3.4574 1.6606 -3.1735 34 1 4.5222 -0.6950 -1.5501 35 1 5.5153 0.5243 -2.3835 36 1 5.5753 -2.4939 -2.9280 37 1 5.5465 -2.3858 -4.7047 38 1 6.5678 -1.2742 -3.7621 39 1 3.0597 -2.1481 -4.6495 40 1 3.0881 -2.2554 -2.8732 41 1 -0.1766 -0.6273 -3.6135 42 1 0.5728 -1.9094 -4.5943 43 1 0.6019 -2.0164 -2.8178 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411549408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:13 Heat of formation + Delta-G solvation = -39.562933 kcal Electronic energy + Delta-G solvation = -18740.341424 eV Core-core repulsion = 16204.663594 eV Total energy + Delta-G solvation = -2535.677830 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.29605 -35.75272 -33.31561 -32.21518 -31.20346 -28.46241 -27.14159 -26.38414 -25.03516 -22.98849 -21.58520 -20.14601 -19.63853 -18.54789 -16.18229 -15.22007 -15.03517 -14.68413 -14.33140 -13.78864 -13.59356 -13.06902 -12.97835 -12.55877 -12.40874 -12.18755 -11.94910 -11.72726 -11.49344 -11.43133 -11.38004 -11.15384 -10.78352 -10.74554 -10.58862 -10.47215 -10.22114 -10.02124 -9.96328 -9.70302 -9.45937 -9.13681 -8.87159 -8.19214 -7.38452 -5.81599 -3.78104 3.42044 3.48515 3.52975 4.61583 4.83222 4.97639 5.03387 5.16056 5.37629 5.53634 5.55674 5.57355 5.66227 5.78853 5.85683 5.88695 5.92586 5.98392 5.99697 6.06774 6.11730 6.15188 6.18570 6.19590 6.32242 6.33652 6.47459 6.55526 6.67106 6.70816 6.73901 6.77600 6.83409 7.14490 7.22856 7.69308 7.79782 8.15111 8.16452 8.31380 8.69005 9.27817 9.82620 11.30749 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.009401 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.493579 B = 2977.591887 C = 3958.312900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.089 3.911 3 H 0.062 0.938 4 C 0.034 3.966 5 C -0.481 4.481 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.884 3.116 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.273 1.273 13 N -0.654 5.654 14 C 0.093 3.907 15 H 0.030 0.970 16 C -0.102 4.102 17 C -0.109 4.109 18 C -0.085 4.085 19 H 0.054 0.946 20 C -0.146 4.146 21 C -0.101 4.101 22 C -0.091 4.091 23 H 0.064 0.936 24 C -0.151 4.151 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.014 0.986 29 H 0.015 0.985 30 H 0.255 0.745 31 H 0.330 0.670 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 2.349 -14.470 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 H 0.081 0.919 4 C -0.003 4.003 5 C -0.520 4.520 6 H 0.080 0.920 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.713 3.287 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.198 1.198 13 N -0.287 5.287 14 C -0.017 4.017 15 H 0.048 0.952 16 C -0.140 4.140 17 C -0.147 4.147 18 C -0.104 4.104 19 H 0.072 0.928 20 C -0.203 4.203 21 C -0.139 4.139 22 C -0.110 4.110 23 H 0.083 0.917 24 C -0.208 4.208 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.150 0.850 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.090 2.325 -14.151 14.492 hybrid contribution 0.049 0.160 -0.046 0.174 sum -2.040 2.485 -14.197 14.557 Atomic orbital electron populations 1.22563 0.99926 1.00957 1.00386 1.21805 0.89533 0.98167 0.92543 0.91938 1.19092 0.96249 0.95259 0.89742 1.21182 0.91866 1.32378 1.06589 0.92017 1.24996 0.97679 0.96127 0.96190 1.69963 1.35028 1.37262 1.12437 0.86714 0.86886 0.77095 0.78015 1.21205 1.21700 1.19802 1.60617 1.57528 1.08321 1.02186 1.21447 0.96193 0.93837 0.90270 0.95175 1.21460 0.94934 0.97121 1.00468 1.21511 0.96300 0.98453 0.98406 1.21052 0.94476 0.96702 0.98146 0.92762 1.21814 0.97943 0.99299 1.01263 1.21536 0.93301 0.97635 1.01397 1.21262 0.94855 0.97363 0.97517 0.91742 1.21889 0.96942 1.00282 1.01699 0.92742 0.94536 0.93239 0.96798 0.96686 0.93493 0.84993 0.91878 0.93611 0.88582 0.93797 0.92244 0.93584 0.93280 0.93402 0.90453 0.93201 0.92905 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 9.15 37.16 0.34 -2.70 16 2 C 0.09 1.78 2.34 -67.71 -0.16 1.62 16 3 H 0.06 1.30 7.11 -51.93 -0.37 0.93 16 4 C 0.03 0.86 4.65 -27.89 -0.13 0.73 16 5 C -0.48 -13.33 8.84 -34.44 -0.30 -13.63 16 6 H 0.06 1.68 7.07 -52.49 -0.37 1.31 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 8 N -0.91 -27.55 13.29 55.43 0.74 -26.81 16 9 Si 0.88 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.65 -11.73 4.29 -99.74 -0.43 -12.15 16 14 C 0.09 1.42 2.11 -67.71 -0.14 1.28 16 15 H 0.03 0.47 7.11 -51.93 -0.37 0.10 16 16 C -0.10 -1.61 5.52 -26.73 -0.15 -1.76 16 17 C -0.11 -1.80 5.05 -26.73 -0.13 -1.94 16 18 C -0.09 -1.19 2.72 -90.62 -0.25 -1.44 16 19 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 20 C -0.15 -1.94 9.20 37.16 0.34 -1.60 16 21 C -0.10 -1.37 4.33 -26.73 -0.12 -1.49 16 22 C -0.09 -1.19 2.49 -90.62 -0.23 -1.41 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 C -0.15 -1.78 8.96 37.16 0.33 -1.44 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.55 7.43 -51.93 -0.39 0.16 16 27 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.33 5.67 5.74 -39.29 -0.23 5.44 16 32 H 0.06 1.12 7.43 -51.93 -0.39 0.73 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 1.94 6.93 -51.93 -0.36 1.58 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.20 7.48 -51.93 -0.39 0.81 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.75 6.21 -51.93 -0.32 0.43 16 LS Contribution 324.03 15.07 4.88 4.88 Total: -1.00 -28.81 324.03 -8.75 -37.56 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.23 Total: 1.86 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -0.69 Total: -22.48 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.31 Total: -38.96 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.81 -8.75 -37.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411549408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.000 kcal (2) G-P(sol) polarization free energy of solvation -28.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds