Wall clock time and date at job start Thu Apr 9 2020 12:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46906 * 2 1 4 4 C 1.53003 * 109.47366 * 239.99817 * 2 1 3 5 5 C 1.50693 * 109.46918 * 174.99818 * 4 2 1 6 6 H 1.07998 * 120.00396 * 0.02562 * 5 4 2 7 7 C 1.37886 * 119.99710 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00126 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99683 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47253 * 60.00593 * 9 7 5 11 11 H 1.48510 * 109.46914 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47418 * 300.00200 * 9 7 5 13 13 N 1.46910 * 109.47011 * 120.00019 * 2 1 3 14 14 C 1.46896 * 110.99610 * 280.02624 * 13 2 1 15 15 H 1.08995 * 109.47440 * 346.33153 * 14 13 2 16 16 C 1.53004 * 109.46907 * 106.33056 * 14 13 2 17 17 C 1.52998 * 109.47058 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47313 * 300.00044 * 17 16 14 19 19 H 1.09000 * 109.46911 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.46918 * 300.00112 * 18 17 16 21 21 C 1.52998 * 109.47147 * 59.99666 * 18 17 16 22 22 C 1.52998 * 109.47286 * 300.00350 * 21 18 17 23 23 H 1.08995 * 109.47011 * 299.99529 * 22 21 18 24 24 C 1.53004 * 109.47058 * 179.97438 * 22 21 18 25 25 H 1.08997 * 109.46886 * 63.12052 * 1 2 3 26 26 H 1.09005 * 109.46788 * 183.11840 * 1 2 3 27 27 H 1.08997 * 109.46964 * 303.11711 * 1 2 3 28 28 H 1.09001 * 109.47290 * 295.00200 * 4 2 1 29 29 H 1.09005 * 109.46526 * 55.00078 * 4 2 1 30 30 H 0.96993 * 120.00303 * 180.02562 * 8 7 5 31 31 H 1.00898 * 110.99599 * 156.07450 * 13 2 1 32 32 H 1.08997 * 109.47239 * 299.99826 * 16 14 13 33 33 H 1.09004 * 109.47158 * 59.99670 * 16 14 13 34 34 H 1.09004 * 109.47051 * 60.00038 * 17 16 14 35 35 H 1.09002 * 109.47168 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.47509 * 59.99543 * 20 18 17 37 37 H 1.08996 * 109.47299 * 179.97438 * 20 18 17 38 38 H 1.09002 * 109.47038 * 299.99766 * 20 18 17 39 39 H 1.08997 * 109.47291 * 179.97438 * 21 18 17 40 40 H 1.09004 * 109.46877 * 60.00214 * 21 18 17 41 41 H 1.09004 * 109.47158 * 299.99896 * 24 22 21 42 42 H 1.09000 * 109.47084 * 180.02562 * 24 22 21 43 43 H 1.08996 * 109.46916 * 60.00179 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1926 -2.3583 8 7 3.5765 -1.8361 -3.3005 9 14 6.0922 -1.0613 -2.4365 10 1 6.6839 -1.6884 -1.2275 11 1 6.5872 -1.7603 -3.6497 12 1 6.4855 0.3694 -2.4949 13 7 2.0197 -0.6925 1.1995 14 6 1.9700 0.1891 2.3734 15 1 1.8138 1.2178 2.0489 16 6 0.8176 -0.2390 3.2843 17 6 0.7662 0.6788 4.5073 18 6 2.0863 0.5806 5.2746 19 1 2.0495 1.2341 6.1461 20 6 2.3054 -0.8637 5.7296 21 6 3.2387 1.0086 4.3638 22 6 3.2901 0.0907 3.1407 23 1 3.4462 -0.9381 3.4649 24 6 4.4422 0.5192 2.2296 25 1 -0.3633 0.4646 -0.9166 26 1 -0.3633 -1.0262 0.0559 27 1 -0.3633 0.5615 0.8607 28 1 1.7518 -1.7716 -1.2056 29 1 1.6055 -0.2617 -2.1370 30 1 4.0608 -2.2429 -4.0358 31 1 2.9520 -1.0503 1.0551 32 1 -0.1228 -0.1694 2.7376 33 1 0.9739 -1.2678 3.6088 34 1 0.6102 1.7078 4.1831 35 1 -0.0550 0.3742 5.1560 36 1 2.3419 -1.5176 4.8583 37 1 3.2460 -0.9339 6.2759 38 1 1.4844 -1.1686 6.3786 39 1 4.1791 0.9390 4.9105 40 1 3.0827 2.0375 4.0395 41 1 4.2857 1.5481 1.9054 42 1 4.4785 -0.1344 1.3581 43 1 5.3827 0.4494 2.7760 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411549410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:17 Heat of formation + Delta-G solvation = -42.098827 kcal Electronic energy + Delta-G solvation = -18496.515803 eV Core-core repulsion = 15960.728008 eV Total energy + Delta-G solvation = -2535.787795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.49792 -36.08555 -33.14049 -32.40705 -31.05857 -28.47119 -27.37038 -26.44853 -25.44505 -23.00079 -21.58162 -20.54030 -19.51787 -18.30094 -16.35869 -15.51354 -14.98025 -14.70113 -14.63302 -14.30054 -13.79916 -13.16067 -13.01691 -12.72229 -12.29893 -12.03566 -11.87932 -11.70358 -11.57075 -11.43238 -11.25314 -11.17168 -11.02252 -10.83791 -10.65721 -10.58028 -10.49507 -10.29211 -10.02385 -9.83576 -9.67883 -9.03443 -8.99167 -8.36506 -7.53553 -5.99980 -4.02559 3.31456 3.36693 3.38181 4.44626 4.69308 4.83353 4.89645 5.15036 5.25731 5.38314 5.39127 5.47765 5.58032 5.69418 5.75267 5.80580 5.89190 5.95915 5.98859 6.02335 6.06571 6.13653 6.19537 6.25560 6.27144 6.32609 6.41751 6.44894 6.51744 6.54413 6.64064 6.70391 6.82579 6.98953 7.04010 7.62509 7.70389 8.01258 8.16532 8.38609 8.43958 9.03783 9.61040 11.11076 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.027971 B = 0.006867 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.811948 B = 4076.360928 C = 4789.307611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.090 3.910 3 H 0.025 0.975 4 C 0.021 3.979 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.681 5.681 14 C 0.094 3.906 15 H 0.045 0.955 16 C -0.107 4.107 17 C -0.114 4.114 18 C -0.090 4.090 19 H 0.062 0.938 20 C -0.151 4.151 21 C -0.105 4.105 22 C -0.102 4.102 23 H 0.076 0.924 24 C -0.159 4.159 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.025 0.975 29 H 0.019 0.981 30 H 0.261 0.739 31 H 0.355 0.645 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.850 4.517 15.351 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.019 4.019 3 H 0.043 0.957 4 C -0.016 4.016 5 C -0.561 4.561 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.714 3.286 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.316 5.316 14 C -0.016 4.016 15 H 0.063 0.937 16 C -0.145 4.145 17 C -0.153 4.153 18 C -0.109 4.109 19 H 0.080 0.920 20 C -0.208 4.208 21 C -0.143 4.143 22 C -0.121 4.121 23 H 0.094 0.906 24 C -0.217 4.217 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.178 0.822 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.415 4.105 15.283 16.189 hybrid contribution 1.820 0.702 -0.351 1.982 sum -1.594 4.806 14.932 15.767 Atomic orbital electron populations 1.21858 0.96980 1.01191 0.99430 1.21665 0.93184 0.95454 0.91628 0.95672 1.19253 0.95381 0.96190 0.90771 1.21205 0.92263 1.34392 1.08227 0.92718 1.24980 0.98031 0.95290 0.95770 1.69947 1.35504 1.35661 1.11934 0.86755 0.86190 0.78154 0.77496 1.20170 1.21305 1.20379 1.60585 1.31776 1.36440 1.02753 1.21550 0.93288 0.95305 0.91491 0.93691 1.21641 0.98792 0.99340 0.94750 1.21586 0.96492 0.99988 0.97188 1.21080 0.95383 0.96929 0.97481 0.92001 1.21943 1.00717 0.96746 1.01389 1.21583 0.97699 0.99150 0.95881 1.21502 0.95388 1.00027 0.95168 0.90582 1.22010 0.97335 1.01970 1.00338 0.93510 0.92682 0.94444 0.95667 0.96265 0.92957 0.82198 0.92056 0.91573 0.92530 0.92486 0.91435 0.93259 0.93221 0.92384 0.92338 0.93083 0.90758 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.10 37.16 0.34 -2.17 16 2 C 0.09 1.89 2.49 -67.70 -0.17 1.72 16 3 H 0.03 0.55 7.53 -51.93 -0.39 0.16 16 4 C 0.02 0.55 4.60 -27.88 -0.13 0.42 16 5 C -0.52 -14.21 8.15 -34.44 -0.28 -14.49 16 6 H 0.05 1.42 5.75 -52.49 -0.30 1.12 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 N -0.68 -13.02 6.12 -99.73 -0.61 -13.63 16 14 C 0.09 1.49 1.73 -67.71 -0.12 1.37 16 15 H 0.05 0.76 7.25 -51.93 -0.38 0.39 16 16 C -0.11 -1.49 5.21 -26.73 -0.14 -1.63 16 17 C -0.11 -1.33 5.45 -26.73 -0.15 -1.48 16 18 C -0.09 -0.99 3.20 -90.62 -0.29 -1.28 16 19 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 20 C -0.15 -1.61 8.50 37.16 0.32 -1.29 16 21 C -0.11 -1.26 4.73 -26.73 -0.13 -1.39 16 22 C -0.10 -1.45 1.95 -90.62 -0.18 -1.63 16 23 H 0.08 1.11 6.43 -51.93 -0.33 0.77 16 24 C -0.16 -2.48 9.00 37.16 0.33 -2.15 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.04 0.61 6.64 -51.93 -0.34 0.27 16 28 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.35 7.36 4.88 -39.29 -0.19 7.16 16 32 H 0.06 0.90 6.60 -51.93 -0.34 0.56 16 33 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.80 4.81 -51.93 -0.25 0.55 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.36 4.76 -51.93 -0.25 1.11 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 315.07 15.07 4.75 4.75 Total: -1.00 -27.98 315.07 -8.57 -36.56 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.74 Total: 4.17 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: -0.68 Total: -22.38 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.13 Total: -39.44 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.98 -8.57 -36.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411549410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.544 kcal (2) G-P(sol) polarization free energy of solvation -27.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds