Wall clock time and date at job start Thu Apr 9 2020 12:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46853 * 2 1 4 4 C 1.53001 * 109.47477 * 239.99733 * 2 1 3 5 5 C 1.50697 * 109.46995 * 174.99956 * 4 2 1 6 6 H 1.07991 * 120.00449 * 359.72153 * 5 4 2 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 4 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 N 1.46900 * 109.47233 * 119.99061 * 2 1 3 14 14 C 1.46893 * 111.00307 * 275.00478 * 13 2 1 15 15 H 1.08992 * 109.47321 * 34.99911 * 14 13 2 16 16 C 1.52999 * 109.46990 * 274.99540 * 14 13 2 17 17 C 1.53001 * 109.47044 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47056 * 60.00476 * 17 16 14 19 19 C 1.53003 * 109.47109 * 299.99853 * 18 17 16 20 20 H 1.09001 * 109.47116 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.46915 * 299.99942 * 19 18 17 22 22 C 1.52999 * 109.46912 * 59.99768 * 19 18 17 23 23 H 1.09002 * 109.47239 * 180.02562 * 22 19 18 24 24 C 1.53006 * 109.46915 * 60.00145 * 22 19 18 25 25 H 1.09009 * 109.46668 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47358 * 300.00203 * 1 2 3 27 27 H 1.08995 * 109.47224 * 60.00941 * 1 2 3 28 28 H 1.08998 * 109.47065 * 54.99382 * 4 2 1 29 29 H 1.09001 * 109.46892 * 294.99646 * 4 2 1 30 30 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 31 31 H 1.00911 * 110.99767 * 38.96092 * 13 2 1 32 32 H 1.08997 * 109.47808 * 300.00113 * 16 14 13 33 33 H 1.09001 * 109.46813 * 60.00290 * 16 14 13 34 34 H 1.09002 * 109.47368 * 180.02562 * 17 16 14 35 35 H 1.09004 * 109.47686 * 300.00249 * 17 16 14 36 36 H 1.08998 * 109.47425 * 59.99599 * 18 17 16 37 37 H 1.09001 * 109.46995 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.47246 * 60.00057 * 21 19 18 39 39 H 1.09002 * 109.46771 * 179.97438 * 21 19 18 40 40 H 1.09001 * 109.47460 * 300.00014 * 21 19 18 41 41 H 1.08993 * 109.46972 * 299.99768 * 24 22 19 42 42 H 1.09000 * 109.46977 * 60.00271 * 24 22 19 43 43 H 1.09006 * 109.46825 * 179.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0786 -0.0819 -0.5417 7 6 4.2305 -1.1936 -2.3576 8 7 3.5771 -1.8431 -3.2961 9 14 6.0916 -1.0551 -2.4403 10 1 6.6884 -1.6754 -1.2302 11 1 6.5867 -1.7564 -3.6521 12 1 6.4789 0.3770 -2.5048 13 7 2.0197 -0.6923 1.1995 14 6 2.0824 0.2229 2.3469 15 1 1.2576 0.9331 2.2906 16 6 3.4110 0.9811 2.3223 17 6 3.4761 1.9348 3.5170 18 6 3.3704 1.1331 4.8158 19 6 2.0418 0.3747 4.8404 20 1 1.9667 -0.1968 5.7656 21 6 0.8840 1.3718 4.7609 22 6 1.9767 -0.5788 3.6457 23 1 1.0300 -1.1188 3.6629 24 6 3.1346 -1.5759 3.7254 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6054 -0.2619 -2.1369 29 1 1.7518 -1.7716 -1.2054 30 1 4.0616 -2.2505 -4.0311 31 1 1.4496 -1.4978 1.4102 32 1 4.2359 0.2709 2.3786 33 1 3.4861 1.5526 1.3972 34 1 4.4225 2.4754 3.4993 35 1 2.6512 2.6451 3.4603 36 1 4.1952 0.4228 4.8726 37 1 3.4163 1.8125 5.6669 38 1 0.9593 1.9429 3.8355 39 1 -0.0625 0.8314 4.7779 40 1 0.9303 2.0512 5.6119 41 1 4.0810 -1.0356 3.7078 42 1 3.0592 -2.1470 4.6506 43 1 3.0880 -2.2555 2.8744 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411550315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:21 Heat of formation + Delta-G solvation = -35.314518 kcal Electronic energy + Delta-G solvation = -18559.990915 eV Core-core repulsion = 16024.497310 eV Total energy + Delta-G solvation = -2535.493605 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.72944 -36.06626 -32.73978 -31.82632 -31.44531 -29.03105 -27.25121 -26.86329 -24.34667 -22.98250 -22.06087 -21.08353 -19.47315 -17.63563 -16.24371 -15.83841 -14.94584 -14.75012 -14.35038 -14.06321 -13.53788 -13.45526 -12.94233 -12.79706 -12.45353 -12.21621 -11.97632 -11.72029 -11.47920 -11.42402 -11.37415 -11.09393 -10.98800 -10.91569 -10.68543 -10.57069 -10.44488 -10.00682 -9.96157 -9.74613 -9.53156 -9.13015 -8.91253 -8.18746 -7.41528 -5.81429 -3.78173 3.44340 3.47948 3.51481 4.61792 4.68623 4.80324 4.83646 5.14715 5.33178 5.45408 5.48786 5.54166 5.58096 5.61581 5.63849 5.79709 5.82259 5.90057 5.94963 5.97215 5.99854 6.07110 6.12090 6.14681 6.23199 6.27058 6.33888 6.43348 6.53740 6.60190 6.67785 6.70935 6.72519 6.93529 7.14410 7.67900 7.79164 8.14474 8.15614 8.29667 8.68561 9.27121 9.82463 11.30885 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.007017 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.144383 B = 3989.529660 C = 4517.756055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.062 0.938 4 C 0.034 3.966 5 C -0.483 4.483 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.659 5.659 14 C 0.094 3.906 15 H 0.035 0.965 16 C -0.108 4.108 17 C -0.121 4.121 18 C -0.114 4.114 19 C -0.084 4.084 20 H 0.064 0.936 21 C -0.151 4.151 22 C -0.086 4.086 23 H 0.060 0.940 24 C -0.143 4.143 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.014 0.986 29 H 0.015 0.985 30 H 0.256 0.744 31 H 0.329 0.671 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.039 0.961 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 5.099 15.885 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.522 4.522 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.206 1.206 13 N -0.289 5.289 14 C -0.016 4.016 15 H 0.053 0.947 16 C -0.146 4.146 17 C -0.159 4.159 18 C -0.152 4.152 19 C -0.103 4.103 20 H 0.082 0.918 21 C -0.208 4.208 22 C -0.104 4.104 23 H 0.079 0.921 24 C -0.200 4.200 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.147 0.853 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.417 5.079 15.546 16.708 hybrid contribution 0.029 0.098 0.048 0.113 sum -3.388 5.178 15.594 16.776 Atomic orbital electron populations 1.22561 0.99855 1.01030 1.00403 1.21802 0.89571 0.98122 0.92480 0.91929 1.19094 0.96190 0.95315 0.89751 1.21122 0.91918 1.32440 1.06717 0.92318 1.25003 0.97796 0.96081 0.96136 1.69959 1.35164 1.37003 1.12588 0.86731 0.86693 0.77880 0.77045 1.20421 1.21721 1.20637 1.60568 1.57519 1.08367 1.02400 1.21478 0.96529 0.93852 0.89697 0.94714 1.21556 0.98225 0.97816 0.96990 1.21593 1.01125 0.98123 0.95021 1.21593 0.97380 0.98793 0.97408 1.21092 0.95080 0.96176 0.97903 0.91756 1.21948 0.97787 0.99200 1.01878 1.21265 0.98900 0.95972 0.94305 0.92110 1.21840 0.98335 0.98800 1.01050 0.93160 0.94551 0.92686 0.96750 0.96619 0.93400 0.85303 0.90976 0.91882 0.92466 0.92345 0.91648 0.92794 0.91898 0.93193 0.93202 0.92105 0.94144 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 9.15 37.16 0.34 -2.74 16 2 C 0.09 1.82 2.34 -67.71 -0.16 1.66 16 3 H 0.06 1.32 7.11 -51.93 -0.37 0.95 16 4 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16 5 C -0.48 -13.68 8.84 -34.44 -0.30 -13.99 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.80 13.29 55.43 0.74 -27.06 16 9 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 13 N -0.66 -12.12 5.05 -99.75 -0.50 -12.62 16 14 C 0.09 1.44 1.72 -67.72 -0.12 1.33 16 15 H 0.04 0.54 5.40 -51.93 -0.28 0.26 16 16 C -0.11 -1.70 5.13 -26.73 -0.14 -1.83 16 17 C -0.12 -1.52 5.65 -26.73 -0.15 -1.67 16 18 C -0.11 -1.29 5.18 -26.73 -0.14 -1.43 16 19 C -0.08 -0.94 2.72 -90.62 -0.25 -1.18 16 20 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 21 C -0.15 -1.60 8.50 37.16 0.32 -1.28 16 22 C -0.09 -1.11 2.10 -90.62 -0.19 -1.30 16 23 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 24 C -0.14 -1.94 8.34 37.16 0.31 -1.63 16 25 H 0.05 0.84 8.13 -51.92 -0.42 0.42 16 26 H 0.04 0.55 7.43 -51.93 -0.39 0.17 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.33 5.78 7.93 -39.29 -0.31 5.46 16 32 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 33 H 0.06 1.12 7.43 -51.93 -0.39 0.74 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 36 H 0.06 0.76 6.43 -51.93 -0.33 0.42 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.72 4.81 -51.93 -0.25 0.47 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.85 4.81 -51.93 -0.25 0.60 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 1.06 7.49 -51.93 -0.39 0.68 16 LS Contribution 316.25 15.07 4.77 4.77 Total: -1.00 -29.49 316.25 -8.54 -38.03 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.81 Total: 1.51 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -0.70 Total: -22.00 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.23 Total: -39.69 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.49 -8.54 -38.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411550315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.714 kcal (2) G-P(sol) polarization free energy of solvation -29.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds