Wall clock time and date at job start Thu Apr 9 2020 12:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46853 * 2 1 4 4 C 1.53001 * 109.47477 * 239.99733 * 2 1 3 5 5 C 1.50697 * 109.46995 * 174.99956 * 4 2 1 6 6 H 1.07991 * 120.00449 * 359.72153 * 5 4 2 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 4 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 N 1.46900 * 109.47233 * 119.99061 * 2 1 3 14 14 C 1.46893 * 111.00307 * 275.00478 * 13 2 1 15 15 H 1.08992 * 109.47321 * 34.99911 * 14 13 2 16 16 C 1.52999 * 109.46990 * 274.99540 * 14 13 2 17 17 C 1.53001 * 109.47044 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47056 * 60.00476 * 17 16 14 19 19 C 1.53003 * 109.47109 * 299.99853 * 18 17 16 20 20 H 1.09001 * 109.47116 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.46915 * 299.99942 * 19 18 17 22 22 C 1.52999 * 109.46912 * 59.99768 * 19 18 17 23 23 H 1.09002 * 109.47239 * 180.02562 * 22 19 18 24 24 C 1.53006 * 109.46915 * 60.00145 * 22 19 18 25 25 H 1.09009 * 109.46668 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47358 * 300.00203 * 1 2 3 27 27 H 1.08995 * 109.47224 * 60.00941 * 1 2 3 28 28 H 1.08998 * 109.47065 * 54.99382 * 4 2 1 29 29 H 1.09001 * 109.46892 * 294.99646 * 4 2 1 30 30 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 31 31 H 1.00911 * 110.99767 * 38.96092 * 13 2 1 32 32 H 1.08997 * 109.47808 * 300.00113 * 16 14 13 33 33 H 1.09001 * 109.46813 * 60.00290 * 16 14 13 34 34 H 1.09002 * 109.47368 * 180.02562 * 17 16 14 35 35 H 1.09004 * 109.47686 * 300.00249 * 17 16 14 36 36 H 1.08998 * 109.47425 * 59.99599 * 18 17 16 37 37 H 1.09001 * 109.46995 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.47246 * 60.00057 * 21 19 18 39 39 H 1.09002 * 109.46771 * 179.97438 * 21 19 18 40 40 H 1.09001 * 109.47460 * 300.00014 * 21 19 18 41 41 H 1.08993 * 109.46972 * 299.99768 * 24 22 19 42 42 H 1.09000 * 109.46977 * 60.00271 * 24 22 19 43 43 H 1.09006 * 109.46825 * 179.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0786 -0.0819 -0.5417 7 6 4.2305 -1.1936 -2.3576 8 7 3.5771 -1.8431 -3.2961 9 14 6.0916 -1.0551 -2.4403 10 1 6.6884 -1.6754 -1.2302 11 1 6.5867 -1.7564 -3.6521 12 1 6.4789 0.3770 -2.5048 13 7 2.0197 -0.6923 1.1995 14 6 2.0824 0.2229 2.3469 15 1 1.2576 0.9331 2.2906 16 6 3.4110 0.9811 2.3223 17 6 3.4761 1.9348 3.5170 18 6 3.3704 1.1331 4.8158 19 6 2.0418 0.3747 4.8404 20 1 1.9667 -0.1968 5.7656 21 6 0.8840 1.3718 4.7609 22 6 1.9767 -0.5788 3.6457 23 1 1.0300 -1.1188 3.6629 24 6 3.1346 -1.5759 3.7254 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6054 -0.2619 -2.1369 29 1 1.7518 -1.7716 -1.2054 30 1 4.0616 -2.2505 -4.0311 31 1 1.4496 -1.4978 1.4102 32 1 4.2359 0.2709 2.3786 33 1 3.4861 1.5526 1.3972 34 1 4.4225 2.4754 3.4993 35 1 2.6512 2.6451 3.4603 36 1 4.1952 0.4228 4.8726 37 1 3.4163 1.8125 5.6669 38 1 0.9593 1.9429 3.8355 39 1 -0.0625 0.8314 4.7779 40 1 0.9303 2.0512 5.6119 41 1 4.0810 -1.0356 3.7078 42 1 3.0592 -2.1470 4.6506 43 1 3.0880 -2.2555 2.8744 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411550315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:20 Heat of formation + Delta-G solvation = -51.992725 kcal Electronic energy + Delta-G solvation = -18560.714137 eV Core-core repulsion = 16024.497310 eV Total energy + Delta-G solvation = -2536.216826 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.84800 -37.59233 -34.75593 -32.97650 -32.79039 -30.32682 -29.09972 -28.07046 -25.46364 -24.92137 -23.19703 -22.25478 -21.11498 -18.72490 -18.34830 -17.12087 -16.54714 -16.14184 -15.77482 -15.40720 -14.89501 -14.56264 -14.33743 -14.13116 -13.85456 -13.57004 -13.39090 -13.20144 -13.03800 -12.87252 -12.57251 -12.47434 -12.43423 -12.36872 -12.05470 -12.03590 -11.84136 -11.66430 -11.19514 -11.09430 -10.97140 -10.74956 -10.63346 -10.45385 -8.88478 -8.07695 -6.11554 1.40244 1.43213 1.50530 2.47953 3.24002 3.42802 3.80439 3.82800 4.10320 4.26168 4.33659 4.38420 4.47499 4.50105 4.52542 4.56338 4.60289 4.66426 4.82389 4.85013 4.94717 5.01950 5.06991 5.12282 5.14925 5.18829 5.21370 5.25071 5.31938 5.37325 5.46267 5.48704 5.54420 5.56045 5.61326 5.73402 5.80115 5.92743 6.39771 6.60399 6.83776 7.02395 7.53390 9.04489 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.007017 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.144383 B = 3989.529660 C = 4517.756055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 H 0.053 0.947 4 C 0.039 3.961 5 C -0.492 4.492 6 H 0.056 0.944 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.675 5.675 14 C 0.099 3.901 15 H 0.040 0.960 16 C -0.106 4.106 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.079 4.079 20 H 0.081 0.919 21 C -0.149 4.149 22 C -0.081 4.081 23 H 0.067 0.933 24 C -0.140 4.140 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.053 0.947 28 H -0.012 1.012 29 H -0.011 1.011 30 H 0.257 0.743 31 H 0.333 0.667 32 H 0.053 0.947 33 H 0.033 0.967 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 5.899 18.309 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.008 4.008 3 H 0.071 0.929 4 C 0.002 3.998 5 C -0.531 4.531 6 H 0.075 0.925 7 C -0.203 4.203 8 N -0.585 5.585 9 Si 0.780 3.220 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.305 5.305 14 C -0.011 4.011 15 H 0.058 0.942 16 C -0.145 4.145 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.098 4.098 20 H 0.099 0.901 21 C -0.206 4.206 22 C -0.099 4.099 23 H 0.086 0.914 24 C -0.197 4.197 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.066 0.934 31 H 0.152 0.848 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.394 5.889 17.988 19.229 hybrid contribution 0.018 -0.159 -0.716 0.734 sum -3.376 5.730 17.272 18.508 Atomic orbital electron populations 1.22411 0.97100 1.01621 1.01643 1.21424 0.91690 0.96621 0.91082 0.92887 1.18979 0.95148 0.94063 0.91652 1.21446 0.93345 1.31853 1.06437 0.92531 1.25851 1.02712 0.95862 0.95877 1.70093 1.37041 1.38062 1.13270 0.85675 0.80886 0.78279 0.77189 1.19780 1.21256 1.19631 1.60411 1.57863 1.09231 1.03013 1.21505 0.96305 0.93618 0.89654 0.94205 1.21520 0.97868 0.97776 0.97290 1.21545 1.01753 0.97648 0.94312 1.21587 0.97331 0.98911 0.97074 1.21084 0.95354 0.96013 0.97368 0.90101 1.21926 0.97588 0.99149 1.01968 1.21240 0.98883 0.96021 0.93790 0.91446 1.21793 0.98306 0.98617 1.00984 0.92901 0.91883 0.92804 0.99404 0.99250 0.93382 0.84833 0.92876 0.94819 0.92014 0.91564 0.92033 0.90696 0.93038 0.92740 0.91645 0.92829 0.92107 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.66 9.15 71.98 0.66 -5.00 16 2 C 0.10 4.18 2.34 44.92 0.11 4.29 16 3 H 0.05 2.27 7.11 -2.39 -0.02 2.25 16 4 C 0.04 2.09 4.65 29.85 0.14 2.23 16 5 C -0.49 -28.61 8.84 25.60 0.23 -28.39 16 6 H 0.06 3.25 7.74 -2.92 -0.02 3.22 16 7 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 8 N -0.94 -59.22 13.29 21.45 0.28 -58.93 16 9 Si 0.95 46.58 29.54 68.60 2.03 48.60 16 10 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.67 -24.95 5.05 -469.49 -2.37 -27.32 16 14 C 0.10 2.92 1.72 44.92 0.08 3.00 16 15 H 0.04 1.16 5.40 -2.39 -0.01 1.15 16 16 C -0.11 -3.32 5.13 30.59 0.16 -3.17 16 17 C -0.11 -2.68 5.65 30.60 0.17 -2.51 16 18 C -0.11 -2.18 5.18 30.60 0.16 -2.03 16 19 C -0.08 -1.52 2.72 -10.79 -0.03 -1.55 16 20 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 21 C -0.15 -2.63 8.50 71.98 0.61 -2.02 16 22 C -0.08 -1.93 2.10 -10.79 -0.02 -1.96 16 23 H 0.07 1.56 8.12 -2.39 -0.02 1.54 16 24 C -0.14 -3.61 8.34 71.98 0.60 -3.01 16 25 H 0.05 1.74 8.13 -2.38 -0.02 1.72 16 26 H 0.06 1.78 7.43 -2.39 -0.02 1.77 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 29 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 30 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.33 11.68 7.93 -89.69 -0.71 10.97 16 32 H 0.05 1.84 6.43 -2.39 -0.02 1.82 16 33 H 0.03 1.22 7.43 -2.39 -0.02 1.20 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.46 6.43 -2.38 -0.02 1.45 16 36 H 0.06 1.27 6.43 -2.39 -0.02 1.25 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.03 4.81 -2.39 -0.01 1.02 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 1.45 4.81 -2.39 -0.01 1.44 16 42 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.04 1.36 7.49 -2.38 -0.02 1.34 16 Total: -1.00 -64.43 316.25 3.51 -60.93 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.25 Total: 16.83 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 3.32 Total: -40.10 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -2.09 Total: -86.26 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -64.43 3.51 -60.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411550315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.933 kcal (2) G-P(sol) polarization free energy of solvation -64.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds