Wall clock time and date at job start Thu Apr 9 2020 12:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52990 * 109.47571 * 2 1 4 4 C 1.53007 * 109.47109 * 120.00483 * 2 1 3 5 5 H 1.09000 * 109.49682 * 299.91632 * 4 2 1 6 6 C 1.53117 * 109.53243 * 179.82352 * 4 2 1 7 7 C 1.53120 * 109.15980 * 182.38288 * 6 4 2 8 8 C 1.53040 * 109.27861 * 57.64959 * 7 6 4 9 9 N 1.46846 * 109.52204 * 300.82328 * 8 7 6 10 10 C 1.46904 * 111.00122 * 185.84066 * 9 8 7 11 11 H 1.08999 * 109.46863 * 54.21670 * 10 9 8 12 12 C 1.53004 * 109.46627 * 294.22125 * 10 9 8 13 13 C 1.52993 * 109.47538 * 174.21884 * 10 9 8 14 14 C 1.50703 * 109.47290 * 295.54908 * 13 10 9 15 15 H 1.08007 * 119.99535 * 5.02209 * 14 13 10 16 16 C 1.37869 * 120.00294 * 185.01945 * 14 13 10 17 17 N 1.31514 * 120.00479 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99970 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47309 * 89.99562 * 18 16 14 20 20 H 1.48500 * 109.47162 * 209.99813 * 18 16 14 21 21 H 1.48501 * 109.46825 * 329.99719 * 18 16 14 22 22 C 1.46840 * 111.19972 * 61.74427 * 9 8 7 23 23 H 1.09001 * 109.47061 * 59.99815 * 1 2 3 24 24 H 1.09002 * 109.47290 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47298 * 300.00027 * 1 2 3 26 26 H 1.08998 * 109.46899 * 239.99776 * 2 1 3 27 27 H 1.08995 * 109.47962 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47079 * 300.00174 * 3 2 1 29 29 H 1.09006 * 109.47482 * 60.00037 * 3 2 1 30 30 H 1.09003 * 109.52604 * 302.27993 * 6 4 2 31 31 H 1.08999 * 109.52890 * 62.41279 * 6 4 2 32 32 H 1.08998 * 109.50619 * 177.59038 * 7 6 4 33 33 H 1.09004 * 109.50301 * 297.66969 * 7 6 4 34 34 H 1.09001 * 109.46246 * 180.80788 * 8 7 6 35 35 H 1.09000 * 109.46361 * 60.84076 * 8 7 6 36 36 H 1.08999 * 109.47127 * 299.99383 * 12 10 9 37 37 H 1.08997 * 109.47490 * 60.00086 * 12 10 9 38 38 H 1.09007 * 109.46865 * 179.97438 * 12 10 9 39 39 H 1.09007 * 109.47158 * 55.54637 * 13 10 9 40 40 H 1.09003 * 109.47577 * 175.54562 * 13 10 9 41 41 H 0.96991 * 120.00424 * 180.02562 * 17 16 14 42 42 H 1.08996 * 109.46584 * 58.27229 * 22 9 8 43 43 H 1.09002 * 109.46749 * 178.25269 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6781 -0.2071 2.1395 6 6 3.5711 -0.7261 1.2484 7 6 4.0720 -1.5011 2.4704 8 6 3.5033 -2.9215 2.4357 9 7 2.0360 -2.8628 2.4385 10 6 1.4555 -4.2080 2.5453 11 1 1.8681 -4.7134 3.4185 12 6 1.7911 -5.0097 1.2861 13 6 -0.0636 -4.0980 2.6901 14 6 -0.3958 -3.4038 3.9858 15 1 0.3955 -3.0020 4.6015 16 6 -1.7096 -3.2816 4.3853 17 7 -1.9995 -2.6762 5.5163 18 14 -3.0781 -3.9770 3.3209 19 1 -3.3480 -5.3825 3.7173 20 1 -4.3085 -3.1660 3.5041 21 1 -2.6656 -3.9355 1.8949 22 6 1.5302 -2.1643 1.2500 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.9335 -1.2059 0.3393 31 1 3.9386 0.2992 1.2905 32 1 5.1609 -1.5446 2.4525 33 1 3.7427 -0.9987 3.3800 34 1 3.8464 -3.4715 3.3119 35 1 3.8448 -3.4275 1.5327 36 1 1.3785 -4.5043 0.4129 37 1 2.8734 -5.0881 1.1829 38 1 1.3608 -6.0080 1.3655 39 1 -0.4675 -3.5237 1.8563 40 1 -0.5019 -5.0961 2.6899 41 1 -2.9238 -2.5905 5.7975 42 1 1.8809 -2.6739 0.3525 43 1 0.4403 -2.1642 1.2650 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411604074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:27 Heat of formation + Delta-G solvation = -24.388723 kcal Electronic energy + Delta-G solvation = -18672.550409 eV Core-core repulsion = 16137.530582 eV Total energy + Delta-G solvation = -2535.019827 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.34479 -36.26549 -33.81848 -32.22254 -29.80053 -29.35195 -27.72857 -27.05399 -23.91452 -23.13376 -22.35310 -20.12564 -19.43029 -18.59371 -16.52796 -15.88346 -14.85499 -14.32167 -14.06075 -13.90623 -13.82718 -13.49957 -13.34664 -12.89857 -12.44825 -12.37860 -12.12945 -12.03210 -11.81241 -11.55254 -11.37528 -11.12619 -10.87971 -10.81540 -10.64399 -10.46996 -10.27296 -10.16190 -9.87325 -9.66937 -9.53541 -9.41435 -8.96512 -8.39991 -7.41540 -5.88601 -3.82459 3.36101 3.44219 3.46647 4.50804 4.55942 4.95553 5.07350 5.11243 5.30477 5.40061 5.45032 5.50284 5.63370 5.77964 5.79249 5.80951 5.85394 5.88434 5.91321 5.93125 6.02966 6.06762 6.14184 6.14587 6.27229 6.30789 6.33927 6.37873 6.47619 6.49329 6.57007 6.60634 6.76340 6.81738 6.89306 7.14943 7.41232 7.87162 7.93581 8.02918 8.75869 9.26129 9.74775 11.25415 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.020359 B = 0.008483 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.952207 B = 3300.099944 C = 3891.939103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.080 4.080 5 H 0.081 0.919 6 C -0.113 4.113 7 C -0.116 4.116 8 C 0.054 3.946 9 N -0.509 5.509 10 C 0.096 3.904 11 H 0.075 0.925 12 C -0.187 4.187 13 C -0.007 4.007 14 C -0.490 4.490 15 H 0.081 0.919 16 C 0.062 3.938 17 N -0.907 5.907 18 Si 0.871 3.129 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.269 1.269 22 C 0.061 3.939 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.022 0.978 36 H 0.051 0.949 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.015 0.985 40 H 0.013 0.987 41 H 0.259 0.741 42 H 0.019 0.981 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.878 3.313 -11.483 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.099 4.099 5 H 0.100 0.900 6 C -0.150 4.150 7 C -0.154 4.154 8 C -0.074 4.074 9 N -0.232 5.232 10 C -0.012 4.012 11 H 0.093 0.907 12 C -0.246 4.246 13 C -0.044 4.044 14 C -0.528 4.528 15 H 0.099 0.901 16 C -0.138 4.138 17 N -0.548 5.548 18 Si 0.699 3.301 19 H -0.206 1.206 20 H -0.216 1.216 21 H -0.194 1.194 22 C -0.066 4.066 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.037 0.963 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.580 3.629 -10.947 14.993 hybrid contribution -0.623 -0.873 -1.215 1.620 sum 8.958 2.755 -12.161 15.353 Atomic orbital electron populations 1.21895 0.95139 1.02307 1.01419 1.21089 0.95924 0.95777 0.97973 1.21868 1.00757 0.96267 1.01421 1.21243 0.94467 0.96160 0.98041 0.90012 1.21650 0.95959 0.99673 0.97747 1.21568 0.98610 0.96089 0.99096 1.22059 0.89496 0.96286 0.99588 1.61951 1.04264 1.17987 1.38998 1.21677 0.97960 0.86545 0.95051 0.90714 1.22563 1.00183 1.01166 1.00697 1.19702 0.90146 0.96243 0.98339 1.21079 0.93294 1.34731 1.03715 0.90113 1.25010 0.98475 0.95434 0.94834 1.69907 1.18538 1.44416 1.21927 0.86934 0.82310 0.79143 0.81746 1.20611 1.21635 1.19388 1.22174 1.01374 0.92738 0.90359 0.93434 0.92170 0.92222 0.91986 0.92751 0.93294 0.92594 0.93019 0.92201 0.92516 0.91034 0.91461 0.95966 0.93024 0.93740 0.92655 0.96667 0.96890 0.93112 0.96251 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.84 37.16 0.33 -1.76 16 2 C -0.09 -1.16 2.51 -90.62 -0.23 -1.39 16 3 C -0.15 -1.65 8.85 37.15 0.33 -1.32 16 4 C -0.08 -1.22 1.93 -90.54 -0.18 -1.39 16 5 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 6 C -0.11 -1.49 4.86 -26.61 -0.13 -1.62 16 7 C -0.12 -1.62 6.09 -26.65 -0.16 -1.78 16 8 C 0.05 0.86 5.04 -3.83 -0.02 0.84 16 9 N -0.51 -9.68 4.32 -226.70 -0.98 -10.66 16 10 C 0.10 1.92 2.30 -67.71 -0.16 1.76 16 11 H 0.07 1.55 8.07 -51.93 -0.42 1.13 16 12 C -0.19 -3.11 8.50 37.16 0.32 -2.80 16 13 C -0.01 -0.17 3.34 -27.89 -0.09 -0.26 16 14 C -0.49 -13.93 9.38 -34.44 -0.32 -14.25 16 15 H 0.08 2.52 7.97 -52.48 -0.42 2.11 16 16 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 17 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 18 Si 0.87 22.00 27.37 -169.99 -4.65 17.34 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.27 -6.52 6.69 56.52 0.38 -6.15 16 22 C 0.06 1.07 3.53 -3.84 -0.01 1.06 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.91 6.45 -51.93 -0.33 0.57 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.57 6.50 -51.93 -0.34 0.23 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.71 6.58 -51.93 -0.34 0.37 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 35 H 0.02 0.34 6.75 -51.93 -0.35 -0.01 16 36 H 0.05 0.85 6.51 -51.93 -0.34 0.51 16 37 H 0.04 0.67 6.67 -51.93 -0.35 0.32 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.02 0.37 5.51 -51.92 -0.29 0.08 16 40 H 0.01 0.31 7.29 -51.93 -0.38 -0.07 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.02 0.32 6.61 -51.93 -0.34 -0.02 16 43 H 0.09 1.76 4.30 -51.93 -0.22 1.54 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -29.97 314.20 -8.47 -38.44 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.92 Total: -1.06 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -0.42 Total: -21.19 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.21 Total: -38.27 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.65 Total: 17.34 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.97 -8.47 -38.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411604074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.049 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds