Wall clock time and date at job start Thu Apr 9 2020 12:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46900 * 2 1 4 4 C 1.53003 * 109.46612 * 119.99380 * 2 1 3 5 5 H 1.08992 * 109.50533 * 300.08140 * 4 2 1 6 6 C 1.53124 * 109.50206 * 60.20070 * 4 2 1 7 7 C 1.53123 * 109.15980 * 177.59165 * 6 4 2 8 8 C 1.53036 * 109.27788 * 302.34618 * 7 6 4 9 9 N 1.46846 * 109.52384 * 59.18000 * 8 7 6 10 10 C 1.46903 * 110.99717 * 174.15896 * 9 8 7 11 11 H 1.09003 * 109.46433 * 178.95382 * 10 9 8 12 12 C 1.52995 * 109.47003 * 58.95672 * 10 9 8 13 13 C 1.52994 * 109.47294 * 298.94915 * 10 9 8 14 14 C 1.50696 * 109.47510 * 295.00432 * 13 10 9 15 15 H 1.07998 * 120.00057 * 0.02562 * 14 13 10 16 16 C 1.37884 * 120.00314 * 179.97438 * 14 13 10 17 17 N 1.31513 * 119.99378 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99919 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47391 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47063 * 119.99974 * 18 16 14 21 21 H 1.48501 * 109.46829 * 239.99662 * 18 16 14 22 22 C 1.46842 * 111.19700 * 298.25435 * 9 8 7 23 23 H 1.09000 * 109.47437 * 300.00542 * 1 2 3 24 24 H 1.09009 * 109.46639 * 60.00426 * 1 2 3 25 25 H 1.08998 * 109.46869 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47437 * 239.99458 * 2 1 3 27 27 H 1.09005 * 109.46408 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47030 * 299.99414 * 3 2 1 29 29 H 1.08991 * 109.47234 * 59.99509 * 3 2 1 30 30 H 1.09000 * 109.52368 * 57.68801 * 6 4 2 31 31 H 1.08997 * 109.52219 * 297.49677 * 6 4 2 32 32 H 1.09000 * 109.50367 * 182.40163 * 7 6 4 33 33 H 1.09006 * 109.50264 * 62.28502 * 7 6 4 34 34 H 1.08999 * 109.46075 * 179.19317 * 8 7 6 35 35 H 1.08998 * 109.46309 * 299.16289 * 8 7 6 36 36 H 1.09006 * 109.47002 * 299.99620 * 12 10 9 37 37 H 1.09001 * 109.47446 * 59.99753 * 12 10 9 38 38 H 1.09003 * 109.46869 * 180.02562 * 12 10 9 39 39 H 1.09006 * 109.46862 * 55.00557 * 13 10 9 40 40 H 1.08994 * 109.47152 * 174.99880 * 13 10 9 41 41 H 0.97006 * 119.99343 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.46447 * 181.75636 * 22 9 8 43 43 H 1.08994 * 109.46873 * 301.72670 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6757 -0.2085 2.1396 6 6 1.5340 -2.1664 1.2477 7 6 2.0977 -2.8976 2.4693 8 6 3.6264 -2.8349 2.4347 9 7 4.0602 -1.4320 2.4384 10 6 5.5220 -1.3334 2.5453 11 1 5.8176 -0.2843 2.5271 12 6 6.1700 -2.0663 1.3691 13 6 5.9814 -1.9699 3.8586 14 6 5.4422 -1.1734 5.0186 15 1 4.8323 -0.3007 4.8374 16 6 5.7264 -1.5594 6.3114 17 7 6.4678 -2.6230 6.5321 18 14 5.0573 -0.5724 7.7493 19 1 4.2576 0.5692 7.2368 20 1 4.1961 -1.4431 8.5892 21 1 6.1867 -0.0584 8.5650 22 6 3.5704 -0.7217 1.2502 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8935 -0.5139 -0.8899 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.8656 -2.6674 0.3382 31 1 0.4449 -2.1711 1.2908 32 1 1.7756 -3.9388 2.4508 33 1 1.7344 -2.4198 3.3791 34 1 4.0305 -3.3423 3.3107 35 1 3.9896 -3.3250 1.5314 36 1 5.8744 -3.1154 1.3873 37 1 5.8427 -1.6128 0.4335 38 1 7.2547 -1.9935 1.4487 39 1 5.6095 -2.9929 3.9161 40 1 7.0707 -1.9766 3.8975 41 1 6.6681 -2.8943 7.4416 42 1 3.9338 0.3059 1.2658 43 1 3.9339 -1.2216 0.3525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411604075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:29 Heat of formation + Delta-G solvation = -28.551386 kcal Electronic energy + Delta-G solvation = -18441.519858 eV Core-core repulsion = 15906.319524 eV Total energy + Delta-G solvation = -2535.200334 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.30403 -36.35967 -33.56569 -32.31728 -30.05840 -28.88552 -27.30844 -27.14855 -23.88470 -23.28235 -22.32088 -20.57486 -19.37767 -18.41914 -16.11679 -15.72730 -14.91510 -14.38207 -14.24745 -13.90942 -13.81951 -13.68045 -13.25500 -12.86954 -12.33237 -12.22983 -12.14420 -11.81350 -11.72348 -11.48407 -11.33867 -11.06714 -10.92916 -10.80536 -10.59128 -10.48094 -10.26866 -10.26131 -10.01912 -9.77680 -9.59892 -9.06732 -8.90138 -8.22641 -7.35276 -5.85968 -3.83249 3.39948 3.47384 3.53344 4.54101 4.59616 4.87335 4.98709 5.03378 5.30344 5.44227 5.47716 5.51756 5.64313 5.67771 5.71818 5.83223 5.86359 5.90831 5.92637 5.95220 6.03141 6.06898 6.11772 6.14607 6.24230 6.24781 6.28759 6.35725 6.46583 6.56932 6.60396 6.70651 6.81345 6.86851 7.04828 7.61327 7.76687 8.02158 8.11171 8.17566 8.62365 9.23326 9.78364 11.26129 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.024906 B = 0.006661 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.939371 B = 4202.500211 C = 4495.918834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.079 4.079 5 H 0.078 0.922 6 C -0.113 4.113 7 C -0.116 4.116 8 C 0.055 3.945 9 N -0.510 5.510 10 C 0.087 3.913 11 H 0.068 0.932 12 C -0.184 4.184 13 C 0.028 3.972 14 C -0.487 4.487 15 H 0.061 0.939 16 C 0.050 3.950 17 N -0.905 5.905 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.288 1.288 22 C 0.058 3.942 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.020 0.980 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.020 0.980 40 H 0.017 0.983 41 H 0.256 0.744 42 H 0.068 0.932 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.287 2.722 -13.259 16.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.098 4.098 5 H 0.096 0.904 6 C -0.150 4.150 7 C -0.154 4.154 8 C -0.073 4.073 9 N -0.233 5.233 10 C -0.021 4.021 11 H 0.086 0.914 12 C -0.243 4.243 13 C -0.009 4.009 14 C -0.526 4.526 15 H 0.079 0.921 16 C -0.149 4.149 17 N -0.546 5.546 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.214 1.214 21 H -0.214 1.214 22 C -0.070 4.070 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.419 2.857 -12.695 16.064 hybrid contribution 0.081 0.042 0.143 0.170 sum -9.338 2.899 -12.552 15.911 Atomic orbital electron populations 1.21872 0.95565 1.01626 1.01310 1.21121 0.95439 0.96148 0.98239 1.21884 1.01381 0.95999 1.01306 1.21227 0.95361 0.95579 0.97605 0.90408 1.21656 0.99634 0.95533 0.98204 1.21585 0.96025 0.99277 0.98545 1.22090 0.94451 0.90034 1.00681 1.61999 1.11813 1.12665 1.36871 1.21893 0.84900 0.99389 0.95924 0.91388 1.22521 1.01371 1.01094 0.99284 1.19242 0.95881 0.96096 0.89721 1.21221 1.29810 1.11389 0.90150 0.92071 1.25008 0.95698 0.95323 0.98920 1.69980 1.39136 1.25268 1.20190 0.86589 0.78609 0.80284 0.82823 1.19780 1.21358 1.21444 1.22149 0.94223 0.98777 0.91832 0.92717 0.93264 0.92549 0.91785 0.92338 0.93313 0.92584 0.92971 0.92318 0.92464 0.91061 0.89266 0.96237 0.93016 0.94175 0.92683 0.96167 0.96443 0.93434 0.91346 0.95998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.85 37.16 0.33 -1.14 16 2 C -0.09 -1.03 2.51 -90.61 -0.23 -1.25 16 3 C -0.15 -1.62 8.84 37.16 0.33 -1.29 16 4 C -0.08 -1.09 1.94 -90.53 -0.18 -1.27 16 5 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 6 C -0.11 -1.50 4.86 -26.60 -0.13 -1.63 16 7 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 8 C 0.06 1.01 4.64 -3.83 -0.02 1.00 16 9 N -0.51 -9.85 4.36 -226.70 -0.99 -10.84 16 10 C 0.09 1.81 2.29 -67.72 -0.16 1.65 16 11 H 0.07 1.45 8.08 -51.93 -0.42 1.03 16 12 C -0.18 -3.26 8.50 37.15 0.32 -2.95 16 13 C 0.03 0.71 4.27 -27.89 -0.12 0.59 16 14 C -0.49 -13.75 8.84 -34.44 -0.30 -14.06 16 15 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 16 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 17 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 18 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 19 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 C 0.06 0.93 3.94 -3.83 -0.02 0.91 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 25 H 0.06 0.55 6.49 -51.93 -0.34 0.21 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.66 6.45 -51.93 -0.33 0.33 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.70 6.58 -51.93 -0.34 0.36 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.90 5.94 -51.93 -0.31 1.60 16 35 H 0.02 0.34 6.62 -51.93 -0.34 0.00 16 36 H 0.05 0.92 6.52 -51.93 -0.34 0.58 16 37 H 0.04 0.64 6.66 -51.93 -0.35 0.29 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.55 6.06 -51.93 -0.31 0.23 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.07 1.09 6.41 -51.93 -0.33 0.75 16 43 H 0.02 0.34 6.73 -51.93 -0.35 -0.01 16 LS Contribution 317.67 15.07 4.79 4.79 Total: -1.00 -29.37 317.67 -8.87 -38.25 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -7.96 Total: -2.65 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -0.43 Total: -20.08 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.25 Total: -37.54 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.37 -8.87 -38.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411604075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.694 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds