Wall clock time and date at job start Thu Apr 9 2020 12:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46900 * 2 1 4 4 C 1.53003 * 109.46612 * 119.99380 * 2 1 3 5 5 H 1.08992 * 109.50533 * 300.08140 * 4 2 1 6 6 C 1.53124 * 109.50206 * 60.20070 * 4 2 1 7 7 C 1.53123 * 109.15980 * 177.59165 * 6 4 2 8 8 C 1.53036 * 109.27788 * 302.34618 * 7 6 4 9 9 N 1.46846 * 109.52384 * 59.18000 * 8 7 6 10 10 C 1.46903 * 110.99717 * 174.15896 * 9 8 7 11 11 H 1.09003 * 109.46433 * 178.95382 * 10 9 8 12 12 C 1.52995 * 109.47003 * 58.95672 * 10 9 8 13 13 C 1.52994 * 109.47294 * 298.94915 * 10 9 8 14 14 C 1.50696 * 109.47510 * 295.00432 * 13 10 9 15 15 H 1.07998 * 120.00057 * 0.02562 * 14 13 10 16 16 C 1.37884 * 120.00314 * 179.97438 * 14 13 10 17 17 N 1.31513 * 119.99378 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99919 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47391 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47063 * 119.99974 * 18 16 14 21 21 H 1.48501 * 109.46829 * 239.99662 * 18 16 14 22 22 C 1.46842 * 111.19700 * 298.25435 * 9 8 7 23 23 H 1.09000 * 109.47437 * 300.00542 * 1 2 3 24 24 H 1.09009 * 109.46639 * 60.00426 * 1 2 3 25 25 H 1.08998 * 109.46869 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47437 * 239.99458 * 2 1 3 27 27 H 1.09005 * 109.46408 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47030 * 299.99414 * 3 2 1 29 29 H 1.08991 * 109.47234 * 59.99509 * 3 2 1 30 30 H 1.09000 * 109.52368 * 57.68801 * 6 4 2 31 31 H 1.08997 * 109.52219 * 297.49677 * 6 4 2 32 32 H 1.09000 * 109.50367 * 182.40163 * 7 6 4 33 33 H 1.09006 * 109.50264 * 62.28502 * 7 6 4 34 34 H 1.08999 * 109.46075 * 179.19317 * 8 7 6 35 35 H 1.08998 * 109.46309 * 299.16289 * 8 7 6 36 36 H 1.09006 * 109.47002 * 299.99620 * 12 10 9 37 37 H 1.09001 * 109.47446 * 59.99753 * 12 10 9 38 38 H 1.09003 * 109.46869 * 180.02562 * 12 10 9 39 39 H 1.09006 * 109.46862 * 55.00557 * 13 10 9 40 40 H 1.08994 * 109.47152 * 174.99880 * 13 10 9 41 41 H 0.97006 * 119.99343 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.46447 * 181.75636 * 22 9 8 43 43 H 1.08994 * 109.46873 * 301.72670 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6757 -0.2085 2.1396 6 6 1.5340 -2.1664 1.2477 7 6 2.0977 -2.8976 2.4693 8 6 3.6264 -2.8349 2.4347 9 7 4.0602 -1.4320 2.4384 10 6 5.5220 -1.3334 2.5453 11 1 5.8176 -0.2843 2.5271 12 6 6.1700 -2.0663 1.3691 13 6 5.9814 -1.9699 3.8586 14 6 5.4422 -1.1734 5.0186 15 1 4.8323 -0.3007 4.8374 16 6 5.7264 -1.5594 6.3114 17 7 6.4678 -2.6230 6.5321 18 14 5.0573 -0.5724 7.7493 19 1 4.2576 0.5692 7.2368 20 1 4.1961 -1.4431 8.5892 21 1 6.1867 -0.0584 8.5650 22 6 3.5704 -0.7217 1.2502 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8935 -0.5139 -0.8899 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.8656 -2.6674 0.3382 31 1 0.4449 -2.1711 1.2908 32 1 1.7756 -3.9388 2.4508 33 1 1.7344 -2.4198 3.3791 34 1 4.0305 -3.3423 3.3107 35 1 3.9896 -3.3250 1.5314 36 1 5.8744 -3.1154 1.3873 37 1 5.8427 -1.6128 0.4335 38 1 7.2547 -1.9935 1.4487 39 1 5.6095 -2.9929 3.9161 40 1 7.0707 -1.9766 3.8975 41 1 6.6681 -2.8943 7.4416 42 1 3.9338 0.3059 1.2658 43 1 3.9339 -1.2216 0.3525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411604075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:28 Heat of formation + Delta-G solvation = -44.988656 kcal Electronic energy + Delta-G solvation = -18442.232631 eV Core-core repulsion = 15906.319524 eV Total energy + Delta-G solvation = -2535.913107 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.62844 -37.64970 -35.15629 -34.13905 -31.55768 -30.15010 -29.15328 -28.07678 -25.48073 -24.81281 -23.79936 -21.85225 -20.46219 -19.95547 -18.34485 -17.12720 -16.54619 -16.02882 -15.57482 -15.05244 -15.01127 -14.91799 -14.65074 -14.28279 -13.88291 -13.63085 -13.44974 -13.16877 -13.10051 -12.85085 -12.79764 -12.62338 -12.41935 -12.34523 -12.00581 -11.80171 -11.75319 -11.63206 -11.31995 -11.27596 -11.06408 -10.83394 -10.69481 -10.46898 -8.84253 -8.10286 -6.14751 1.40046 1.40986 1.54358 2.47014 3.13244 3.27675 3.83080 3.93279 4.00669 4.19365 4.26000 4.30827 4.39417 4.46846 4.53733 4.57940 4.63528 4.71791 4.74530 4.85948 4.89454 4.96396 5.02593 5.05775 5.10152 5.14771 5.16141 5.21748 5.24216 5.27039 5.33063 5.37690 5.47752 5.52282 5.60429 5.68869 5.72405 5.90662 6.35349 6.52606 6.61029 6.99103 7.50973 9.02021 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.024906 B = 0.006661 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.939371 B = 4202.500211 C = 4495.918834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.148 4.148 4 C -0.075 4.075 5 H 0.058 0.942 6 C -0.105 4.105 7 C -0.113 4.113 8 C 0.059 3.941 9 N -0.531 5.531 10 C 0.094 3.906 11 H 0.061 0.939 12 C -0.172 4.172 13 C 0.034 3.966 14 C -0.497 4.497 15 H 0.055 0.945 16 C -0.005 4.005 17 N -0.940 5.940 18 Si 0.955 3.045 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.281 1.281 22 C 0.061 3.939 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.031 0.969 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.055 0.945 39 H -0.001 1.001 40 H -0.010 1.010 41 H 0.258 0.742 42 H 0.066 0.934 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.959 3.518 -14.815 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 C -0.206 4.206 4 C -0.094 4.094 5 H 0.077 0.923 6 C -0.143 4.143 7 C -0.151 4.151 8 C -0.069 4.069 9 N -0.255 5.255 10 C -0.015 4.015 11 H 0.079 0.921 12 C -0.231 4.231 13 C -0.003 4.003 14 C -0.535 4.535 15 H 0.074 0.926 16 C -0.201 4.201 17 N -0.583 5.583 18 Si 0.781 3.219 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.207 1.207 22 C -0.067 4.067 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.017 0.983 40 H 0.008 0.992 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.099 3.662 -14.265 18.442 hybrid contribution 0.623 -0.215 0.625 0.908 sum -10.476 3.447 -13.640 17.541 Atomic orbital electron populations 1.21852 0.94295 1.02164 1.01824 1.21073 0.96424 0.95935 0.96892 1.21883 1.00908 0.95973 1.01804 1.21196 0.93674 0.96230 0.98292 0.92348 1.21621 1.00726 0.94704 0.97221 1.21565 0.93881 1.00639 0.99039 1.21997 0.96310 0.89323 0.99234 1.61909 1.10660 1.13537 1.39404 1.21601 0.86606 0.98689 0.94581 0.92079 1.22372 1.01201 1.00641 0.98918 1.19093 0.93933 0.95146 0.92114 1.21492 1.29442 1.11268 0.91297 0.92638 1.25842 0.96028 0.96380 1.01819 1.70103 1.40421 1.26841 1.20888 0.85535 0.78102 0.78894 0.79321 1.19070 1.20869 1.20704 1.22207 0.95742 0.98154 0.90550 0.93209 0.91803 0.92003 0.90944 0.93085 0.91613 0.93320 0.91733 0.90302 0.90748 0.93068 0.93370 0.95080 0.93252 0.91598 0.92547 0.98286 0.99159 0.93285 0.91533 0.94940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.85 71.98 0.64 -1.78 16 2 C -0.08 -1.66 2.51 -10.79 -0.03 -1.69 16 3 C -0.15 -2.90 8.84 71.98 0.64 -2.26 16 4 C -0.08 -1.93 1.94 -10.74 -0.02 -1.95 16 5 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 6 C -0.11 -2.54 4.86 30.68 0.15 -2.39 16 7 C -0.11 -3.43 6.09 30.65 0.19 -3.25 16 8 C 0.06 2.18 4.64 86.33 0.40 2.58 16 9 N -0.53 -20.53 4.36 -871.14 -3.79 -24.33 16 10 C 0.09 3.94 2.29 44.91 0.10 4.05 16 11 H 0.06 2.63 8.08 -2.39 -0.02 2.61 16 12 C -0.17 -6.00 8.50 71.98 0.61 -5.39 16 13 C 0.03 1.83 4.27 29.84 0.13 1.95 16 14 C -0.50 -28.83 8.84 25.60 0.23 -28.60 16 15 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 16 C 0.00 -0.29 5.46 84.66 0.46 0.17 16 17 N -0.94 -58.51 13.29 21.45 0.28 -58.22 16 18 Si 0.96 46.30 29.54 68.60 2.03 48.33 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 22 C 0.06 1.85 3.94 86.33 0.34 2.19 16 23 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.06 0.97 6.49 -2.39 -0.02 0.96 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.06 6.45 -2.38 -0.02 1.05 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.62 6.58 -2.39 -0.02 1.61 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.05 2.15 5.94 -2.39 -0.01 2.14 16 35 H 0.03 1.06 6.62 -2.39 -0.02 1.04 16 36 H 0.05 1.72 6.52 -2.38 -0.02 1.71 16 37 H 0.07 1.95 6.66 -2.39 -0.02 1.93 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.00 -0.06 6.06 -2.38 -0.01 -0.08 16 40 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 41 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 42 H 0.07 2.04 6.41 -2.38 -0.02 2.02 16 43 H 0.03 0.93 6.73 -2.39 -0.02 0.91 16 Total: -1.00 -64.18 317.67 3.29 -60.89 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.94 Total: 9.69 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 3.83 Total: -36.36 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -3.51 Total: -82.55 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -64.18 3.29 -60.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411604075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.904 kcal (2) G-P(sol) polarization free energy of solvation -64.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds