Wall clock time and date at job start Thu Apr 9 2020 12:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47105 * 2 1 4 4 C 1.53002 * 109.46991 * 240.00352 * 2 1 3 5 5 H 1.09007 * 109.50091 * 60.07266 * 4 2 1 6 6 C 1.53120 * 109.50697 * 180.19443 * 4 2 1 7 7 C 1.53113 * 109.16282 * 177.59418 * 6 4 2 8 8 C 1.53040 * 109.27774 * 302.34727 * 7 6 4 9 9 N 1.46849 * 109.52281 * 59.18121 * 8 7 6 10 10 C 1.46900 * 110.99825 * 174.15766 * 9 8 7 11 11 H 1.09000 * 109.46930 * 66.27565 * 10 9 8 12 12 C 1.53000 * 109.46933 * 186.27621 * 10 9 8 13 13 C 1.53000 * 109.47315 * 306.27978 * 10 9 8 14 14 C 1.50700 * 109.46944 * 302.82986 * 13 10 9 15 15 H 1.08002 * 119.99801 * 5.13005 * 14 13 10 16 16 C 1.37876 * 120.00105 * 185.12870 * 14 13 10 17 17 N 1.31516 * 119.99844 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00254 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46897 * 59.99380 * 18 16 14 20 20 H 1.48494 * 109.46987 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46774 * 299.99935 * 18 16 14 22 22 C 1.46846 * 111.19382 * 298.25448 * 9 8 7 23 23 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47041 * 299.99582 * 1 2 3 25 25 H 1.08997 * 109.47242 * 59.99477 * 1 2 3 26 26 H 1.08996 * 109.47695 * 120.00241 * 2 1 3 27 27 H 1.08997 * 109.47237 * 299.99883 * 3 2 1 28 28 H 1.09000 * 109.47301 * 60.00536 * 3 2 1 29 29 H 1.09002 * 109.47189 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.52005 * 297.50185 * 6 4 2 31 31 H 1.08997 * 109.52051 * 57.68811 * 6 4 2 32 32 H 1.09000 * 109.50319 * 182.40539 * 7 6 4 33 33 H 1.09008 * 109.53594 * 62.30547 * 7 6 4 34 34 H 1.08996 * 109.46214 * 299.15818 * 8 7 6 35 35 H 1.09006 * 109.46039 * 179.19291 * 8 7 6 36 36 H 1.08990 * 109.46995 * 60.00665 * 12 10 9 37 37 H 1.09005 * 109.46788 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.47521 * 299.99886 * 12 10 9 39 39 H 1.08993 * 109.47149 * 62.83128 * 13 10 9 40 40 H 1.09003 * 109.47169 * 182.83535 * 13 10 9 41 41 H 0.96996 * 120.00296 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.46402 * 301.72498 * 22 9 8 43 43 H 1.09006 * 109.45723 * 181.76289 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6779 -0.2069 -2.1396 6 6 3.5711 -0.7259 -1.2477 7 6 4.0726 -1.5011 -2.4692 8 6 3.5039 -2.9215 -2.4346 9 7 2.0366 -2.8629 -2.4383 10 6 1.4563 -4.2082 -2.5452 11 1 1.6874 -4.7762 -1.6441 12 6 -0.0615 -4.0977 -2.7033 13 6 2.0454 -4.9224 -3.7633 14 6 1.7862 -4.1021 -5.0006 15 1 1.3287 -3.1274 -4.9162 16 6 2.1332 -4.5958 -6.2403 17 7 2.6908 -5.7825 -6.3429 18 14 1.8126 -3.5787 -7.7739 19 1 2.5518 -2.2942 -7.6795 20 1 2.2738 -4.3280 -8.9701 21 1 0.3577 -3.3050 -7.8911 22 6 1.5302 -2.1642 -1.2501 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 3.9386 0.2994 -1.2909 31 1 3.9329 -1.2055 -0.3382 32 1 5.1616 -1.5445 -2.4507 33 1 3.7437 -0.9995 -3.3794 34 1 3.8450 -3.4273 -1.5314 35 1 3.8476 -3.4717 -3.3106 36 1 -0.2925 -3.5298 -3.6045 37 1 -0.4920 -5.0960 -2.7831 38 1 -0.4812 -3.5889 -1.8355 39 1 3.1198 -5.0459 -3.6276 40 1 1.5780 -5.9012 -3.8718 41 1 2.9346 -6.1300 -7.2150 42 1 1.8805 -2.6736 -0.3524 43 1 0.4403 -2.1644 -1.2657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411604078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:32 Heat of formation + Delta-G solvation = -26.949842 kcal Electronic energy + Delta-G solvation = -18509.052803 eV Core-core repulsion = 15973.921917 eV Total energy + Delta-G solvation = -2535.130885 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.20190 -36.25977 -33.68687 -32.27055 -29.97977 -29.20588 -27.23720 -26.79511 -23.94272 -23.22176 -22.20007 -20.25445 -19.34995 -18.76672 -16.35047 -15.54902 -14.89185 -14.38626 -14.06991 -13.99426 -13.78655 -13.39972 -13.17715 -12.77808 -12.62556 -12.30183 -12.09047 -11.89014 -11.46711 -11.32210 -11.03386 -10.90372 -10.87181 -10.74717 -10.64538 -10.50125 -10.34848 -10.21522 -10.10827 -9.70523 -9.51179 -9.02714 -8.90117 -8.22112 -7.36110 -5.85800 -3.83042 3.42472 3.46311 3.50022 4.53742 4.60002 4.88179 4.98927 5.03477 5.31481 5.46879 5.49506 5.51097 5.64059 5.69551 5.76531 5.86771 5.87987 5.92444 5.99254 6.08124 6.10056 6.11189 6.19491 6.24338 6.26683 6.30854 6.35568 6.39036 6.55985 6.61653 6.65023 6.84056 6.90085 7.00724 7.21913 7.62782 7.73885 8.03562 8.09025 8.18247 8.63565 9.25074 9.78779 11.26351 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.027695 B = 0.006606 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.754955 B = 4237.387620 C = 4385.290972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.078 4.078 5 H 0.077 0.923 6 C -0.113 4.113 7 C -0.115 4.115 8 C 0.058 3.942 9 N -0.512 5.512 10 C 0.089 3.911 11 H 0.008 0.992 12 C -0.130 4.130 13 C 0.024 3.976 14 C -0.485 4.485 15 H 0.067 0.933 16 C 0.049 3.951 17 N -0.905 5.905 18 Si 0.888 3.112 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.056 3.944 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.013 0.987 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.030 0.970 39 H 0.013 0.987 40 H 0.022 0.978 41 H 0.257 0.743 42 H 0.016 0.984 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 10.486 12.230 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.097 4.097 5 H 0.096 0.904 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.070 4.070 9 N -0.237 5.237 10 C -0.019 4.019 11 H 0.026 0.974 12 C -0.188 4.188 13 C -0.013 4.013 14 C -0.523 4.523 15 H 0.085 0.915 16 C -0.150 4.150 17 N -0.546 5.546 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.205 1.205 22 C -0.073 4.073 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.031 0.969 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.031 0.969 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.034 0.966 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.205 10.616 11.677 15.827 hybrid contribution 0.157 -0.032 -0.181 0.241 sum -1.048 10.584 11.497 15.662 Atomic orbital electron populations 1.21880 0.95456 1.01904 1.01293 1.21121 0.95633 0.95940 0.98284 1.21869 1.01087 0.96117 1.01288 1.21217 0.95161 0.95768 0.97537 0.90449 1.21665 0.95444 0.99699 0.98285 1.21574 0.98883 0.96444 0.98417 1.22088 0.88046 0.96040 1.00823 1.61809 1.06151 1.18809 1.36901 1.21725 0.94793 0.87477 0.97879 0.97443 1.21757 0.95122 1.00880 1.01028 1.19280 0.95500 0.95252 0.91305 1.21159 1.38216 1.02816 0.90139 0.91498 1.25030 0.95987 0.94975 0.98991 1.69959 1.43397 1.17427 1.23860 0.86718 0.78461 0.80309 0.82806 1.20437 1.21774 1.20528 1.22218 1.00018 0.93577 0.91451 0.92375 0.93313 0.92596 0.91782 0.92732 0.93267 0.92538 0.92356 0.92991 0.92462 0.91078 0.96924 0.88480 0.90925 0.93328 0.95079 0.96851 0.95996 0.93344 0.96559 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.84 37.16 0.33 -1.28 16 2 C -0.09 -1.03 2.51 -90.62 -0.23 -1.26 16 3 C -0.15 -1.47 8.85 37.16 0.33 -1.14 16 4 C -0.08 -1.09 1.94 -90.54 -0.18 -1.26 16 5 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 6 C -0.11 -1.54 4.86 -26.61 -0.13 -1.67 16 7 C -0.12 -1.84 6.09 -26.65 -0.16 -2.01 16 8 C 0.06 1.10 5.03 -3.83 -0.02 1.08 16 9 N -0.51 -9.98 3.85 -226.69 -0.87 -10.86 16 10 C 0.09 1.87 2.34 -67.71 -0.16 1.72 16 11 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 12 C -0.13 -2.53 8.82 37.16 0.33 -2.20 16 13 C 0.02 0.60 4.19 -27.88 -0.12 0.49 16 14 C -0.48 -13.34 7.63 -34.44 -0.26 -13.60 16 15 H 0.07 1.85 6.86 -52.49 -0.36 1.49 16 16 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 17 N -0.91 -27.24 13.29 55.43 0.74 -26.50 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 22 C 0.06 0.89 4.16 -3.84 -0.02 0.88 16 23 H 0.06 0.66 6.45 -51.93 -0.34 0.32 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.55 6.49 -51.93 -0.34 0.22 16 30 H 0.06 0.71 6.58 -51.93 -0.34 0.37 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 34 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.10 2.15 5.74 -51.93 -0.30 1.85 16 36 H 0.07 1.54 6.91 -51.93 -0.36 1.18 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.52 6.33 -51.93 -0.33 0.19 16 39 H 0.01 0.36 6.37 -51.93 -0.33 0.03 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 1.17 4.41 -51.93 -0.23 0.95 16 LS Contribution 317.14 15.07 4.78 4.78 Total: -1.00 -28.85 317.14 -8.73 -37.58 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -7.97 Total: -3.10 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -0.38 Total: -18.95 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.14 Total: -37.36 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.85 -8.73 -37.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411604078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.632 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds