Wall clock time and date at job start Thu Apr 9 2020 12:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47105 * 2 1 4 4 C 1.53002 * 109.46991 * 240.00352 * 2 1 3 5 5 H 1.09007 * 109.50091 * 60.07266 * 4 2 1 6 6 C 1.53120 * 109.50697 * 180.19443 * 4 2 1 7 7 C 1.53113 * 109.16282 * 177.59418 * 6 4 2 8 8 C 1.53040 * 109.27774 * 302.34727 * 7 6 4 9 9 N 1.46849 * 109.52281 * 59.18121 * 8 7 6 10 10 C 1.46900 * 110.99825 * 174.15766 * 9 8 7 11 11 H 1.09000 * 109.46930 * 66.27565 * 10 9 8 12 12 C 1.53000 * 109.46933 * 186.27621 * 10 9 8 13 13 C 1.53000 * 109.47315 * 306.27978 * 10 9 8 14 14 C 1.50700 * 109.46944 * 302.82986 * 13 10 9 15 15 H 1.08002 * 119.99801 * 5.13005 * 14 13 10 16 16 C 1.37876 * 120.00105 * 185.12870 * 14 13 10 17 17 N 1.31516 * 119.99844 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00254 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46897 * 59.99380 * 18 16 14 20 20 H 1.48494 * 109.46987 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46774 * 299.99935 * 18 16 14 22 22 C 1.46846 * 111.19382 * 298.25448 * 9 8 7 23 23 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47041 * 299.99582 * 1 2 3 25 25 H 1.08997 * 109.47242 * 59.99477 * 1 2 3 26 26 H 1.08996 * 109.47695 * 120.00241 * 2 1 3 27 27 H 1.08997 * 109.47237 * 299.99883 * 3 2 1 28 28 H 1.09000 * 109.47301 * 60.00536 * 3 2 1 29 29 H 1.09002 * 109.47189 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.52005 * 297.50185 * 6 4 2 31 31 H 1.08997 * 109.52051 * 57.68811 * 6 4 2 32 32 H 1.09000 * 109.50319 * 182.40539 * 7 6 4 33 33 H 1.09008 * 109.53594 * 62.30547 * 7 6 4 34 34 H 1.08996 * 109.46214 * 299.15818 * 8 7 6 35 35 H 1.09006 * 109.46039 * 179.19291 * 8 7 6 36 36 H 1.08990 * 109.46995 * 60.00665 * 12 10 9 37 37 H 1.09005 * 109.46788 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.47521 * 299.99886 * 12 10 9 39 39 H 1.08993 * 109.47149 * 62.83128 * 13 10 9 40 40 H 1.09003 * 109.47169 * 182.83535 * 13 10 9 41 41 H 0.96996 * 120.00296 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.46402 * 301.72498 * 22 9 8 43 43 H 1.09006 * 109.45723 * 181.76289 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6779 -0.2069 -2.1396 6 6 3.5711 -0.7259 -1.2477 7 6 4.0726 -1.5011 -2.4692 8 6 3.5039 -2.9215 -2.4346 9 7 2.0366 -2.8629 -2.4383 10 6 1.4563 -4.2082 -2.5452 11 1 1.6874 -4.7762 -1.6441 12 6 -0.0615 -4.0977 -2.7033 13 6 2.0454 -4.9224 -3.7633 14 6 1.7862 -4.1021 -5.0006 15 1 1.3287 -3.1274 -4.9162 16 6 2.1332 -4.5958 -6.2403 17 7 2.6908 -5.7825 -6.3429 18 14 1.8126 -3.5787 -7.7739 19 1 2.5518 -2.2942 -7.6795 20 1 2.2738 -4.3280 -8.9701 21 1 0.3577 -3.3050 -7.8911 22 6 1.5302 -2.1642 -1.2501 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 3.9386 0.2994 -1.2909 31 1 3.9329 -1.2055 -0.3382 32 1 5.1616 -1.5445 -2.4507 33 1 3.7437 -0.9995 -3.3794 34 1 3.8450 -3.4273 -1.5314 35 1 3.8476 -3.4717 -3.3106 36 1 -0.2925 -3.5298 -3.6045 37 1 -0.4920 -5.0960 -2.7831 38 1 -0.4812 -3.5889 -1.8355 39 1 3.1198 -5.0459 -3.6276 40 1 1.5780 -5.9012 -3.8718 41 1 2.9346 -6.1300 -7.2150 42 1 1.8805 -2.6736 -0.3524 43 1 0.4403 -2.1644 -1.2657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411604078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:32 Heat of formation + Delta-G solvation = -42.522542 kcal Electronic energy + Delta-G solvation = -18509.728085 eV Core-core repulsion = 15973.921917 eV Total energy + Delta-G solvation = -2535.806168 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53811 -37.60574 -35.21220 -34.14994 -31.55692 -30.47900 -28.69347 -28.08101 -25.74308 -24.60619 -23.63919 -21.50637 -20.59390 -20.31813 -18.34606 -17.09998 -16.52466 -16.00967 -15.55333 -15.18949 -14.88555 -14.71568 -14.55406 -14.21391 -14.17283 -13.76940 -13.30639 -13.13026 -12.86225 -12.74508 -12.69251 -12.59675 -12.43814 -12.18950 -12.11767 -11.89335 -11.66932 -11.64533 -11.37218 -11.27328 -11.02566 -10.74987 -10.68855 -10.42837 -8.91420 -8.07339 -6.10725 1.42501 1.44727 1.52177 2.48837 3.11492 3.29217 3.83498 3.92911 4.00307 4.19804 4.29916 4.37436 4.41144 4.47152 4.55111 4.63169 4.68179 4.72453 4.74999 4.86829 4.91483 4.98937 5.05563 5.08895 5.12482 5.15507 5.19594 5.25395 5.27780 5.31988 5.38280 5.45023 5.51266 5.53389 5.61075 5.68770 5.70832 5.91455 6.33548 6.51521 6.62010 7.03666 7.54841 9.05128 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.027695 B = 0.006606 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.754955 B = 4237.387620 C = 4385.290972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.074 4.074 5 H 0.063 0.937 6 C -0.107 4.107 7 C -0.111 4.111 8 C 0.060 3.940 9 N -0.527 5.527 10 C 0.094 3.906 11 H 0.013 0.987 12 C -0.122 4.122 13 C 0.030 3.970 14 C -0.482 4.482 15 H 0.065 0.935 16 C -0.006 4.006 17 N -0.943 5.943 18 Si 0.953 3.047 19 H -0.272 1.272 20 H -0.290 1.290 21 H -0.270 1.270 22 C 0.057 3.943 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.017 0.983 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.062 0.938 39 H -0.010 1.010 40 H -0.007 1.007 41 H 0.257 0.743 42 H 0.021 0.979 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.677 12.767 13.522 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.201 4.201 4 C -0.093 4.093 5 H 0.081 0.919 6 C -0.144 4.144 7 C -0.149 4.149 8 C -0.068 4.068 9 N -0.251 5.251 10 C -0.014 4.014 11 H 0.031 0.969 12 C -0.180 4.180 13 C -0.007 4.007 14 C -0.521 4.521 15 H 0.083 0.917 16 C -0.202 4.202 17 N -0.585 5.585 18 Si 0.779 3.221 19 H -0.198 1.198 20 H -0.216 1.216 21 H -0.196 1.196 22 C -0.070 4.070 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.008 0.992 40 H 0.011 0.989 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.767 12.914 12.983 18.397 hybrid contribution 0.347 -0.775 -0.541 1.007 sum -1.420 12.139 12.443 17.441 Atomic orbital electron populations 1.21878 0.95046 1.01673 1.01922 1.21073 0.95960 0.96557 0.96807 1.21848 1.01328 0.95050 1.01895 1.21188 0.95384 0.94241 0.98447 0.91892 1.21632 0.95150 1.00509 0.97102 1.21539 0.99727 0.94500 0.99116 1.21989 0.88112 0.97676 0.99004 1.61778 1.06351 1.17729 1.39287 1.21533 0.95775 0.88376 0.95748 0.96895 1.21661 0.93816 1.01016 1.01470 1.19134 0.94052 0.94274 0.93242 1.21358 1.37209 1.02625 0.90896 0.91658 1.25846 0.95997 0.96059 1.02294 1.70097 1.44799 1.19159 1.24495 0.85677 0.78689 0.78765 0.78920 1.19775 1.21574 1.19554 1.22302 1.00267 0.94541 0.89914 0.93031 0.91678 0.93026 0.91252 0.93017 0.91829 0.92143 0.90203 0.92104 0.90976 0.92721 0.96477 0.92706 0.92875 0.93291 0.91896 0.99181 0.98907 0.93430 0.96126 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.84 71.98 0.64 -2.15 16 2 C -0.09 -1.67 2.51 -10.79 -0.03 -1.70 16 3 C -0.14 -2.39 8.85 71.98 0.64 -1.76 16 4 C -0.07 -1.88 1.94 -10.74 -0.02 -1.90 16 5 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 6 C -0.11 -2.63 4.86 30.67 0.15 -2.48 16 7 C -0.11 -3.44 6.09 30.65 0.19 -3.26 16 8 C 0.06 2.31 5.03 86.33 0.43 2.74 16 9 N -0.53 -20.40 3.85 -871.10 -3.35 -23.75 16 10 C 0.09 3.98 2.34 44.92 0.11 4.09 16 11 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 12 C -0.12 -4.66 8.82 71.98 0.63 -4.03 16 13 C 0.03 1.60 4.19 29.85 0.13 1.72 16 14 C -0.48 -27.18 7.63 25.60 0.20 -26.99 16 15 H 0.07 3.65 6.86 -2.91 -0.02 3.63 16 16 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 17 N -0.94 -58.34 13.29 21.45 0.28 -58.05 16 18 Si 0.95 45.78 29.54 68.60 2.03 47.81 16 19 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 22 C 0.06 1.74 4.16 86.33 0.36 2.10 16 23 H 0.05 1.03 6.45 -2.39 -0.02 1.01 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.96 6.49 -2.39 -0.02 0.94 16 30 H 0.08 1.67 6.58 -2.39 -0.02 1.65 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 2.55 5.74 -2.38 -0.01 2.53 16 36 H 0.05 2.22 6.91 -2.39 -0.02 2.21 16 37 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.06 1.98 6.33 -2.39 -0.02 1.96 16 39 H -0.01 -0.57 6.37 -2.39 -0.02 -0.59 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.08 2.32 4.41 -2.38 -0.01 2.31 16 Total: -1.00 -62.95 317.14 3.77 -59.17 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.94 Total: 8.33 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 3.88 Total: -33.50 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -3.07 Total: -81.80 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -62.95 3.77 -59.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411604078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.648 kcal (2) G-P(sol) polarization free energy of solvation -62.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds