Wall clock time and date at job start Thu Apr 9 2020 12:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46853 * 2 1 4 4 C 1.53001 * 109.46908 * 240.00138 * 2 1 3 5 5 C 1.50701 * 109.47013 * 173.56166 * 4 2 1 6 6 H 1.07995 * 119.99874 * 3.84482 * 5 4 2 7 7 C 1.37872 * 120.00052 * 183.85547 * 5 4 2 8 8 N 1.31513 * 119.99965 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00290 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46840 * 89.99684 * 9 7 5 11 11 H 1.48498 * 109.47134 * 209.99945 * 9 7 5 12 12 H 1.48497 * 109.46688 * 329.99805 * 9 7 5 13 13 N 1.46893 * 109.47159 * 119.99981 * 2 1 3 14 14 C 1.47933 * 111.05862 * 347.74377 * 13 2 1 15 15 C 1.50446 * 112.87934 * 191.44131 * 14 13 2 16 16 C 1.54309 * 108.49872 * 93.64166 * 15 14 13 17 17 C 1.45884 * 112.18683 * 281.46375 * 16 15 14 18 18 C 1.54313 * 112.18543 * 61.12314 * 17 16 15 19 19 C 1.53000 * 109.63321 * 161.76583 * 18 17 16 20 20 C 1.53000 * 109.63586 * 41.16082 * 18 17 16 21 21 C 1.48001 * 111.00213 * 218.92073 * 13 2 1 22 22 H 1.09000 * 109.47044 * 305.51636 * 1 2 3 23 23 H 1.09002 * 109.47198 * 65.51346 * 1 2 3 24 24 H 1.08998 * 109.46982 * 185.51484 * 1 2 3 25 25 H 1.09006 * 109.46921 * 293.55513 * 4 2 1 26 26 H 1.08993 * 109.47641 * 53.55400 * 4 2 1 27 27 H 0.97006 * 120.00284 * 179.97438 * 8 7 5 28 28 H 1.08997 * 108.85333 * 70.51712 * 14 13 2 29 29 H 1.08998 * 108.71728 * 312.26951 * 14 13 2 30 30 H 1.09000 * 109.63089 * 333.93626 * 15 14 13 31 31 H 1.09005 * 109.63438 * 213.34720 * 15 14 13 32 32 H 1.09001 * 108.93838 * 160.76573 * 16 15 14 33 33 H 1.09001 * 108.93693 * 42.16053 * 16 15 14 34 34 H 1.08996 * 108.93584 * 300.42620 * 17 16 15 35 35 H 1.09003 * 108.93439 * 181.81980 * 17 16 15 36 36 H 1.08993 * 109.46948 * 178.99952 * 19 18 17 37 37 H 1.09001 * 109.46480 * 298.99735 * 19 18 17 38 38 H 1.08998 * 109.47379 * 58.99478 * 19 18 17 39 39 H 1.09003 * 109.47077 * 338.49368 * 20 18 17 40 40 H 1.09006 * 109.46561 * 98.48581 * 20 18 17 41 41 H 1.08996 * 109.47502 * 218.48916 * 20 18 17 42 42 H 1.09002 * 108.81066 * 323.97271 * 21 13 2 43 43 H 1.09000 * 108.81317 * 205.58827 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5386 -0.5848 -1.3315 6 1 4.0803 -0.0922 -0.5377 7 6 4.2179 -1.0885 -2.4204 8 7 3.5582 -1.6886 -3.3870 9 14 6.0754 -0.9187 -2.5228 10 1 6.7160 -2.0997 -1.8901 11 1 6.4872 -0.8360 -3.9471 12 1 6.4996 0.3144 -1.8125 13 7 2.0197 -0.6925 1.1994 14 6 0.9250 -0.9141 2.1694 15 6 1.4195 -1.3672 3.5160 16 6 1.5934 -0.1263 4.4167 17 6 2.8227 0.6012 4.1208 18 6 2.8533 1.1284 2.6709 19 6 3.9036 2.2341 2.5479 20 6 1.4759 1.6778 2.2944 21 6 3.2100 -0.0116 1.7562 22 1 -0.3633 0.5970 0.8365 23 1 -0.3634 0.4260 -0.9352 24 1 -0.3633 -1.0229 0.0988 25 1 1.7739 -1.7768 -1.1935 26 1 1.5856 -0.2784 -2.1355 27 1 4.0361 -2.0427 -4.1533 28 1 0.2488 -1.6703 1.7706 29 1 0.3732 0.0177 2.2929 30 1 2.3775 -1.8745 3.4026 31 1 0.6933 -2.0457 3.9636 32 1 1.6132 -0.4455 5.4587 33 1 0.7436 0.5401 4.2686 34 1 3.6727 -0.0637 4.2735 35 1 2.9081 1.4448 4.8059 36 1 3.9354 2.5922 1.5189 37 1 3.6426 3.0585 3.2116 38 1 4.8809 1.8395 2.8257 39 1 0.7202 1.2436 2.9491 40 1 1.4742 2.7621 2.4066 41 1 1.2519 1.4193 1.2595 42 1 3.8118 0.3735 0.9330 43 1 3.8016 -0.7377 2.3137 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411607248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:34 Heat of formation + Delta-G solvation = 30.468535 kcal Electronic energy + Delta-G solvation = -19230.355075 eV Core-core repulsion = 16697.714037 eV Total energy + Delta-G solvation = -2532.641038 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55134 -35.76897 -33.55586 -32.56697 -30.43219 -28.78270 -27.30117 -26.77507 -24.55256 -23.84589 -22.62087 -20.11368 -18.84273 -18.23467 -16.27838 -15.77072 -15.55372 -14.85109 -14.67454 -14.14043 -13.78052 -13.00080 -12.73514 -12.57780 -12.46717 -11.96775 -11.85967 -11.72313 -11.39980 -11.33544 -11.20142 -10.96086 -10.80500 -10.76955 -10.58655 -10.41409 -10.31804 -10.11010 -9.92723 -9.77207 -9.68243 -9.09227 -8.65624 -8.22064 -7.06840 -5.85794 -3.84313 3.39123 3.45267 3.47033 4.56569 4.58426 4.84049 4.89848 5.13018 5.19332 5.42439 5.51178 5.58560 5.70843 5.74930 5.81854 5.87060 5.93467 5.96731 5.97857 6.01037 6.12492 6.15618 6.23095 6.25005 6.28318 6.35051 6.38905 6.47527 6.49609 6.59617 6.68878 6.72970 6.82032 6.87697 7.22623 7.67845 7.84998 8.08955 8.17413 8.25937 8.61972 9.20723 9.77005 11.26155 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.025978 B = 0.008313 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.563387 B = 3367.562519 C = 3841.519325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.086 3.914 3 H 0.049 0.951 4 C 0.034 3.966 5 C -0.499 4.499 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.900 5.900 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.523 5.523 14 C 0.036 3.964 15 C -0.120 4.120 16 C -0.123 4.123 17 C -0.106 4.106 18 C -0.090 4.090 19 C -0.135 4.135 20 C -0.195 4.195 21 C 0.065 3.935 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.020 0.980 26 H 0.017 0.983 27 H 0.257 0.743 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.373 5.226 13.916 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 H 0.067 0.933 4 C -0.004 4.004 5 C -0.538 4.538 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.713 3.287 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.201 1.201 13 N -0.247 5.247 14 C -0.090 4.090 15 C -0.158 4.158 16 C -0.160 4.160 17 C -0.143 4.143 18 C -0.091 4.091 19 C -0.193 4.193 20 C -0.251 4.251 21 C -0.062 4.062 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.206 4.690 13.611 14.999 hybrid contribution 0.897 0.765 0.176 1.192 sum -3.309 5.455 13.787 15.192 Atomic orbital electron populations 1.22374 0.97682 1.01595 1.00651 1.21950 0.91659 0.96167 0.92298 0.93307 1.19166 0.95707 0.95825 0.89658 1.21328 0.92568 1.35813 1.04068 0.92175 1.24988 0.97700 0.95883 0.96084 1.69964 1.35132 1.39466 1.09501 0.86719 0.86761 0.78305 0.76928 1.20863 1.21535 1.20092 1.61786 1.06187 1.51161 1.05567 1.22358 0.94510 1.00561 0.91611 1.21429 1.02235 0.96915 0.95196 1.20678 0.98820 0.97507 0.99016 1.20606 0.98305 0.99159 0.96230 1.20951 0.95748 0.96719 0.95717 1.21896 0.98351 0.97414 1.01661 1.23201 0.96898 0.99844 1.05120 1.22206 0.93322 0.92904 0.97801 0.93581 0.92741 0.92242 0.96189 0.96522 0.93343 0.92091 0.92861 0.90916 0.92077 0.92900 0.91813 0.92318 0.93066 0.92350 0.93438 0.92870 0.90875 0.94022 0.88897 0.89169 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 7.67 37.16 0.29 -2.55 16 2 C 0.09 1.75 1.56 -67.71 -0.11 1.65 16 3 H 0.05 1.02 5.90 -51.93 -0.31 0.71 16 4 C 0.03 0.88 4.64 -27.88 -0.13 0.75 16 5 C -0.50 -13.89 8.75 -34.44 -0.30 -14.19 16 6 H 0.06 1.61 4.76 -52.49 -0.25 1.36 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 9 Si 0.88 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.52 -9.89 4.36 -227.97 -1.00 -10.89 16 14 C 0.04 0.57 3.80 -4.53 -0.02 0.55 16 15 C -0.12 -1.62 5.63 -27.32 -0.15 -1.78 16 16 C -0.12 -1.48 5.20 -29.41 -0.15 -1.63 16 17 C -0.11 -1.34 4.46 -29.41 -0.13 -1.47 16 18 C -0.09 -1.30 0.77 -155.09 -0.12 -1.42 16 19 C -0.14 -1.86 7.97 37.16 0.30 -1.56 16 20 C -0.19 -2.79 7.06 37.16 0.26 -2.53 16 21 C 0.07 1.17 4.19 -4.49 -0.02 1.15 16 22 H 0.05 0.68 5.47 -51.93 -0.28 0.40 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 1.02 6.85 -51.93 -0.36 0.66 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.06 0.98 6.87 -51.93 -0.36 0.62 16 29 H 0.05 0.78 2.49 -51.93 -0.13 0.65 16 30 H 0.07 1.09 7.08 -51.93 -0.37 0.72 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.75 5.57 -51.93 -0.29 0.46 16 34 H 0.06 0.76 7.52 -51.93 -0.39 0.37 16 35 H 0.05 0.60 8.00 -51.93 -0.42 0.18 16 36 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.05 0.58 8.13 -51.93 -0.42 0.15 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.97 3.15 -51.93 -0.16 0.81 16 40 H 0.04 0.56 7.74 -51.93 -0.40 0.15 16 41 H 0.09 1.49 1.97 -51.93 -0.10 1.39 16 42 H 0.09 1.85 4.49 -51.93 -0.23 1.62 16 43 H 0.06 1.07 6.58 -51.93 -0.34 0.73 16 LS Contribution 293.47 15.07 4.42 4.42 Total: -1.00 -29.34 293.47 -8.14 -37.48 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.90 Total: 0.32 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -0.38 Total: -21.60 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.26 Total: -37.56 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.34 -8.14 -37.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411607248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.946 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds