Wall clock time and date at job start Thu Apr 9 2020 12:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46908 * 2 1 4 4 H 1.09005 * 109.47145 * 51.77194 * 3 2 1 5 5 N 1.46900 * 109.47513 * 291.77090 * 3 2 1 6 6 C 1.46898 * 111.00004 * 309.22561 * 5 3 2 7 7 C 1.52999 * 109.47149 * 172.83763 * 6 5 3 8 8 C 1.53000 * 109.47247 * 300.00044 * 7 6 5 9 9 C 1.53001 * 109.47067 * 60.00256 * 7 6 5 10 10 C 1.50696 * 109.47155 * 180.02562 * 7 6 5 11 11 H 1.07997 * 120.00075 * 0.02562 * 10 7 6 12 12 C 1.37881 * 120.00079 * 179.97438 * 10 7 6 13 13 N 1.31512 * 119.99911 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 119.99961 * 179.97438 * 12 10 7 15 15 H 1.48508 * 109.46928 * 90.00566 * 14 12 10 16 16 H 1.48504 * 109.47140 * 210.00035 * 14 12 10 17 17 H 1.48497 * 109.47628 * 330.00404 * 14 12 10 18 18 C 1.53006 * 109.47327 * 171.77130 * 3 2 1 19 19 H 1.09004 * 115.54913 * 90.31134 * 18 3 2 20 20 C 1.53000 * 117.49616 * 304.65137 * 18 3 2 21 21 C 1.52998 * 117.50055 * 235.98837 * 18 3 2 22 22 H 1.09002 * 117.49779 * 214.97679 * 21 18 3 23 23 C 1.52998 * 117.49972 * 359.97438 * 21 18 3 24 24 H 1.08995 * 109.47078 * 307.00587 * 1 2 3 25 25 H 1.09006 * 109.46777 * 67.00591 * 1 2 3 26 26 H 1.08999 * 109.46783 * 186.99714 * 1 2 3 27 27 H 1.09003 * 109.47043 * 240.00484 * 2 1 3 28 28 H 1.08992 * 109.47366 * 119.99924 * 2 1 3 29 29 H 1.00901 * 110.99552 * 73.18077 * 5 3 2 30 30 H 1.08993 * 109.47063 * 292.83907 * 6 5 3 31 31 H 1.09001 * 109.46915 * 52.84010 * 6 5 3 32 32 H 1.09009 * 109.46940 * 60.00170 * 8 7 6 33 33 H 1.09003 * 109.47407 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.47328 * 300.00067 * 8 7 6 35 35 H 1.08993 * 109.47271 * 59.99780 * 9 7 6 36 36 H 1.09003 * 109.47147 * 180.02562 * 9 7 6 37 37 H 1.09001 * 109.47000 * 300.00098 * 9 7 6 38 38 H 0.97003 * 120.00247 * 179.97438 * 13 12 10 39 39 H 1.09005 * 117.50133 * 359.97438 * 20 18 3 40 40 H 1.08998 * 117.50007 * 144.99374 * 20 18 3 41 41 H 1.08999 * 109.47377 * 49.36967 * 23 21 18 42 42 H 1.09000 * 109.47201 * 169.37336 * 23 21 18 43 43 H 1.08994 * 109.47069 * 289.37301 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5615 1.9970 0.8073 5 7 1.7189 2.0755 -1.2862 6 6 2.1604 1.2383 -2.4096 7 6 1.6539 1.8384 -3.7227 8 6 0.1252 1.8972 -3.7004 9 6 2.2163 3.2517 -3.8880 10 6 2.1063 0.9793 -4.8752 11 1 2.6957 0.0936 -4.6896 12 6 1.7668 1.3234 -6.1665 13 7 1.0486 2.4017 -6.3924 14 14 2.3282 0.2589 -7.5951 15 1 1.3053 -0.7827 -7.8681 16 1 2.5075 1.1049 -8.8023 17 1 3.6177 -0.3920 -7.2507 18 6 3.5560 1.4476 0.2065 19 1 4.1545 1.4075 -0.7037 20 6 4.1028 0.7324 1.4435 21 6 4.1066 2.2618 1.3789 22 1 5.0676 2.7572 1.2403 23 6 3.0992 3.0092 2.2549 24 1 -0.3633 0.6185 0.8206 25 1 -0.3633 0.4015 -0.9461 26 1 -0.3633 -1.0200 0.1252 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 0.7329 2.2793 -1.3526 30 1 3.2494 1.1964 -2.4255 31 1 1.7597 0.2315 -2.2919 32 1 -0.2024 2.5185 -2.8668 33 1 -0.2357 2.3252 -4.6357 34 1 -0.2755 0.8904 -3.5827 35 1 3.3053 3.2098 -3.9038 36 1 1.8551 3.6794 -4.8233 37 1 1.8887 3.8729 -3.0543 38 1 0.8100 2.6441 -7.3009 39 1 3.3825 0.2586 2.1106 40 1 5.0611 0.2219 1.3474 41 1 2.2978 2.3305 2.5469 42 1 3.6010 3.3840 3.1469 43 1 2.6809 3.8455 1.6949 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414163959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:48 Heat of formation + Delta-G solvation = 8.081746 kcal Electronic energy + Delta-G solvation = -18376.491767 eV Core-core repulsion = 15842.879965 eV Total energy + Delta-G solvation = -2533.611802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.01598 -36.56078 -34.40349 -31.71267 -30.03292 -28.48919 -25.94582 -25.55726 -25.19998 -23.79149 -22.17685 -20.44925 -19.14942 -17.69397 -16.54226 -15.55573 -15.10067 -14.74387 -14.32015 -13.88214 -13.61473 -13.01219 -12.86501 -12.65718 -12.29222 -12.16658 -11.97581 -11.76210 -11.43044 -11.26212 -11.07077 -11.02651 -10.74503 -10.61232 -10.48722 -10.19460 -10.13173 -9.93260 -9.82152 -9.49897 -9.29540 -8.98255 -8.57255 -8.26282 -7.53588 -5.88447 -3.98457 3.32596 3.39726 3.42905 3.93121 4.46581 4.72148 4.92809 4.96701 5.27109 5.34952 5.37009 5.42917 5.45829 5.51250 5.75448 5.83570 5.87272 5.90679 6.02120 6.08033 6.15270 6.18369 6.24776 6.37897 6.40281 6.49179 6.60028 6.69809 6.78419 6.97216 7.10921 7.22211 7.41602 7.52496 7.78361 7.81505 7.90411 8.09917 8.25330 8.39095 8.59827 9.03195 9.66395 11.12046 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.031066 B = 0.006026 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.099126 B = 4645.409642 C = 4744.939846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.163 4.163 3 C 0.114 3.886 4 H 0.075 0.925 5 N -0.678 5.678 6 C 0.069 3.931 7 C 0.066 3.934 8 C -0.132 4.132 9 C -0.119 4.119 10 C -0.504 4.504 11 H 0.051 0.949 12 C 0.065 3.935 13 N -0.885 5.885 14 Si 0.887 3.113 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.125 4.125 19 H 0.107 0.893 20 C -0.184 4.184 21 C -0.153 4.153 22 H 0.098 0.902 23 C -0.120 4.120 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.338 0.662 30 H 0.054 0.946 31 H 0.024 0.976 32 H 0.009 0.991 33 H 0.083 0.917 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.019 0.981 38 H 0.257 0.743 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.352 -1.499 14.011 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.202 4.202 3 C 0.003 3.997 4 H 0.093 0.907 5 N -0.309 5.309 6 C -0.059 4.059 7 C 0.066 3.934 8 C -0.190 4.190 9 C -0.177 4.177 10 C -0.543 4.543 11 H 0.069 0.931 12 C -0.136 4.136 13 N -0.524 5.524 14 Si 0.715 3.285 15 H -0.209 1.209 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.144 4.144 19 H 0.125 0.875 20 C -0.221 4.221 21 C -0.171 4.171 22 H 0.116 0.884 23 C -0.177 4.177 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.028 0.972 33 H 0.101 0.899 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.092 0.908 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.830 -0.988 13.838 13.994 hybrid contribution -0.251 -1.428 -0.851 1.681 sum 1.580 -2.416 12.987 13.304 Atomic orbital electron populations 1.21771 0.96126 1.01204 1.01853 1.22303 0.95883 0.99428 1.02623 1.21156 0.92574 0.92347 0.93599 0.90672 1.60716 1.22891 1.46498 1.00786 1.22244 0.99064 0.93694 0.90866 1.18118 0.91891 0.93551 0.89850 1.21845 0.98724 0.97597 1.00796 1.21642 0.97774 0.97672 1.00598 1.21109 1.32942 1.09307 0.90919 0.93088 1.24883 0.95118 0.95059 0.98531 1.69833 1.38067 1.24396 1.20118 0.86682 0.79021 0.80423 0.82341 1.20905 1.21324 1.20097 1.22373 0.96361 1.02917 0.92753 0.87496 1.23099 1.02350 0.94575 1.02118 1.22303 1.00628 0.92743 1.01435 0.88416 1.21312 0.97855 1.00057 0.98432 0.93246 0.92284 0.93122 0.90569 0.92368 0.84190 0.92760 0.95843 0.97209 0.89862 0.96213 0.96326 0.90835 0.96216 0.93249 0.89184 0.89375 0.92756 0.92834 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.62 37.16 0.36 -1.68 16 2 C -0.16 -2.31 4.95 -26.73 -0.13 -2.44 16 3 C 0.11 1.68 2.61 -67.71 -0.18 1.50 16 4 H 0.08 1.05 5.71 -51.93 -0.30 0.75 16 5 N -0.68 -12.04 5.61 -106.73 -0.60 -12.64 16 6 C 0.07 1.44 3.92 -3.83 -0.02 1.42 16 7 C 0.07 1.60 0.57 -155.66 -0.09 1.51 16 8 C -0.13 -3.10 7.94 37.16 0.29 -2.81 16 9 C -0.12 -2.93 8.09 37.16 0.30 -2.63 16 10 C -0.50 -13.60 8.01 -34.44 -0.28 -13.88 16 11 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 12 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 13 N -0.89 -24.62 9.35 55.43 0.52 -24.10 16 14 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C -0.13 -1.80 5.22 -90.62 -0.47 -2.28 16 19 H 0.11 1.76 6.67 -51.93 -0.35 1.42 16 20 C -0.18 -2.20 9.26 -26.69 -0.25 -2.44 16 21 C -0.15 -1.90 6.41 -90.58 -0.58 -2.48 16 22 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 23 C -0.12 -1.32 8.86 37.16 0.33 -0.99 16 24 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 25 H 0.06 0.89 7.54 -51.93 -0.39 0.50 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.23 5.67 -51.93 -0.29 0.94 16 28 H 0.06 0.74 6.73 -51.93 -0.35 0.39 16 29 H 0.34 6.04 5.80 -39.29 -0.23 5.81 16 30 H 0.05 1.17 6.74 -51.93 -0.35 0.82 16 31 H 0.02 0.49 5.58 -51.93 -0.29 0.20 16 32 H 0.01 0.19 6.41 -51.92 -0.33 -0.14 16 33 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 1.98 6.07 -51.93 -0.32 1.66 16 37 H 0.02 0.44 7.60 -51.93 -0.39 0.04 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.09 1.01 7.26 -51.93 -0.38 0.63 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.58 7.02 -51.93 -0.36 0.21 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 318.45 15.07 4.80 4.80 Total: -1.00 -26.76 318.45 -8.67 -35.43 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.57 Total: 5.80 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -0.80 Total: -25.51 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.08 Total: -36.74 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.76 -8.67 -35.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414163959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.507 kcal (2) G-P(sol) polarization free energy of solvation -26.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds