Wall clock time and date at job start Thu Apr 9 2020 12:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46908 * 2 1 4 4 H 1.09005 * 109.47145 * 51.77194 * 3 2 1 5 5 N 1.46900 * 109.47513 * 291.77090 * 3 2 1 6 6 C 1.46898 * 111.00004 * 309.22561 * 5 3 2 7 7 C 1.52999 * 109.47149 * 172.83763 * 6 5 3 8 8 C 1.53000 * 109.47247 * 300.00044 * 7 6 5 9 9 C 1.53001 * 109.47067 * 60.00256 * 7 6 5 10 10 C 1.50696 * 109.47155 * 180.02562 * 7 6 5 11 11 H 1.07997 * 120.00075 * 0.02562 * 10 7 6 12 12 C 1.37881 * 120.00079 * 179.97438 * 10 7 6 13 13 N 1.31512 * 119.99911 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 119.99961 * 179.97438 * 12 10 7 15 15 H 1.48508 * 109.46928 * 90.00566 * 14 12 10 16 16 H 1.48504 * 109.47140 * 210.00035 * 14 12 10 17 17 H 1.48497 * 109.47628 * 330.00404 * 14 12 10 18 18 C 1.53006 * 109.47327 * 171.77130 * 3 2 1 19 19 H 1.09004 * 115.54913 * 90.31134 * 18 3 2 20 20 C 1.53000 * 117.49616 * 304.65137 * 18 3 2 21 21 C 1.52998 * 117.50055 * 235.98837 * 18 3 2 22 22 H 1.09002 * 117.49779 * 214.97679 * 21 18 3 23 23 C 1.52998 * 117.49972 * 359.97438 * 21 18 3 24 24 H 1.08995 * 109.47078 * 307.00587 * 1 2 3 25 25 H 1.09006 * 109.46777 * 67.00591 * 1 2 3 26 26 H 1.08999 * 109.46783 * 186.99714 * 1 2 3 27 27 H 1.09003 * 109.47043 * 240.00484 * 2 1 3 28 28 H 1.08992 * 109.47366 * 119.99924 * 2 1 3 29 29 H 1.00901 * 110.99552 * 73.18077 * 5 3 2 30 30 H 1.08993 * 109.47063 * 292.83907 * 6 5 3 31 31 H 1.09001 * 109.46915 * 52.84010 * 6 5 3 32 32 H 1.09009 * 109.46940 * 60.00170 * 8 7 6 33 33 H 1.09003 * 109.47407 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.47328 * 300.00067 * 8 7 6 35 35 H 1.08993 * 109.47271 * 59.99780 * 9 7 6 36 36 H 1.09003 * 109.47147 * 180.02562 * 9 7 6 37 37 H 1.09001 * 109.47000 * 300.00098 * 9 7 6 38 38 H 0.97003 * 120.00247 * 179.97438 * 13 12 10 39 39 H 1.09005 * 117.50133 * 359.97438 * 20 18 3 40 40 H 1.08998 * 117.50007 * 144.99374 * 20 18 3 41 41 H 1.08999 * 109.47377 * 49.36967 * 23 21 18 42 42 H 1.09000 * 109.47201 * 169.37336 * 23 21 18 43 43 H 1.08994 * 109.47069 * 289.37301 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5615 1.9970 0.8073 5 7 1.7189 2.0755 -1.2862 6 6 2.1604 1.2383 -2.4096 7 6 1.6539 1.8384 -3.7227 8 6 0.1252 1.8972 -3.7004 9 6 2.2163 3.2517 -3.8880 10 6 2.1063 0.9793 -4.8752 11 1 2.6957 0.0936 -4.6896 12 6 1.7668 1.3234 -6.1665 13 7 1.0486 2.4017 -6.3924 14 14 2.3282 0.2589 -7.5951 15 1 1.3053 -0.7827 -7.8681 16 1 2.5075 1.1049 -8.8023 17 1 3.6177 -0.3920 -7.2507 18 6 3.5560 1.4476 0.2065 19 1 4.1545 1.4075 -0.7037 20 6 4.1028 0.7324 1.4435 21 6 4.1066 2.2618 1.3789 22 1 5.0676 2.7572 1.2403 23 6 3.0992 3.0092 2.2549 24 1 -0.3633 0.6185 0.8206 25 1 -0.3633 0.4015 -0.9461 26 1 -0.3633 -1.0200 0.1252 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 0.7329 2.2793 -1.3526 30 1 3.2494 1.1964 -2.4255 31 1 1.7597 0.2315 -2.2919 32 1 -0.2024 2.5185 -2.8668 33 1 -0.2357 2.3252 -4.6357 34 1 -0.2755 0.8904 -3.5827 35 1 3.3053 3.2098 -3.9038 36 1 1.8551 3.6794 -4.8233 37 1 1.8887 3.8729 -3.0543 38 1 0.8100 2.6441 -7.3009 39 1 3.3825 0.2586 2.1106 40 1 5.0611 0.2219 1.3474 41 1 2.2978 2.3305 2.5469 42 1 3.6010 3.3840 3.1469 43 1 2.6809 3.8455 1.6949 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414163959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:47 Heat of formation + Delta-G solvation = -5.269352 kcal Electronic energy + Delta-G solvation = -18377.070714 eV Core-core repulsion = 15842.879965 eV Total energy + Delta-G solvation = -2534.190749 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.23386 -38.11198 -35.89978 -33.47478 -31.56238 -29.40488 -27.52275 -27.35229 -27.18110 -25.35041 -23.25151 -21.52480 -20.71864 -19.13368 -18.19051 -17.28835 -16.54422 -16.19463 -15.80206 -15.22135 -14.90720 -14.53469 -14.27721 -13.98369 -13.81937 -13.51175 -13.24900 -13.05876 -12.96334 -12.83908 -12.59917 -12.50906 -12.32418 -12.23730 -12.14059 -12.08152 -11.61958 -11.35870 -11.23074 -10.91114 -10.79987 -10.54803 -10.49021 -10.33069 -8.99139 -7.96149 -6.12660 1.41030 1.43281 1.51675 2.46433 2.91079 3.25730 3.52446 3.83240 3.95291 4.17505 4.26877 4.32813 4.41590 4.52783 4.57385 4.65902 4.68272 4.87313 4.89512 4.94388 4.96076 5.03862 5.06778 5.09117 5.14208 5.17991 5.22407 5.27339 5.35540 5.40297 5.42596 5.48629 5.54728 5.60550 5.70788 5.78032 6.21250 6.32553 6.40137 6.53350 6.75636 6.97366 7.54731 9.01942 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.031066 B = 0.006026 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.099126 B = 4645.409642 C = 4744.939846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.158 4.158 3 C 0.118 3.882 4 H 0.092 0.908 5 N -0.680 5.680 6 C 0.091 3.909 7 C 0.057 3.943 8 C -0.119 4.119 9 C -0.105 4.105 10 C -0.524 4.524 11 H 0.041 0.959 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.942 3.058 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.152 4.152 19 H 0.078 0.922 20 C -0.166 4.166 21 C -0.149 4.149 22 H 0.098 0.902 23 C -0.118 4.118 24 H 0.067 0.933 25 H 0.037 0.963 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.338 0.662 30 H 0.039 0.961 31 H 0.020 0.980 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.016 0.984 35 H 0.007 0.993 36 H 0.048 0.952 37 H 0.033 0.967 38 H 0.257 0.743 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 -1.978 15.881 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.197 4.197 3 C 0.008 3.992 4 H 0.110 0.890 5 N -0.311 5.311 6 C -0.038 4.038 7 C 0.057 3.943 8 C -0.177 4.177 9 C -0.163 4.163 10 C -0.563 4.563 11 H 0.060 0.940 12 C -0.176 4.176 13 N -0.543 5.543 14 Si 0.769 3.231 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.200 1.200 18 C -0.171 4.171 19 H 0.096 0.904 20 C -0.203 4.203 21 C -0.167 4.167 22 H 0.116 0.884 23 C -0.175 4.175 24 H 0.086 0.914 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.158 0.842 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.026 0.974 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.769 -1.469 15.720 15.887 hybrid contribution -0.203 -1.261 -1.392 1.889 sum 1.566 -2.730 14.328 14.670 Atomic orbital electron populations 1.21754 0.95400 1.02140 1.01421 1.22238 0.96454 0.98731 1.02291 1.21223 0.93085 0.92780 0.92132 0.89033 1.60637 1.22777 1.46417 1.01315 1.21828 0.97881 0.93663 0.90450 1.18178 0.92324 0.92949 0.90882 1.21654 0.98163 0.97626 1.00219 1.21474 0.96870 0.98208 0.99750 1.21418 1.33040 1.09507 0.92310 0.94026 1.25521 0.95318 0.96154 1.00653 1.69963 1.38560 1.25320 1.20408 0.85806 0.78601 0.79028 0.79637 1.20427 1.21050 1.19959 1.22256 0.95754 1.06272 0.92802 0.90389 1.23158 1.02681 0.94423 1.00025 1.22420 1.00833 0.93377 1.00104 0.88409 1.21318 0.97775 0.99719 0.98648 0.91416 0.94364 0.92114 0.93071 0.90399 0.84178 0.94257 0.96167 0.94850 0.92639 0.96439 0.97398 0.93339 0.94789 0.93352 0.87733 0.88704 0.92028 0.91080 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.62 71.98 0.69 -3.00 16 2 C -0.16 -4.19 4.95 30.59 0.15 -4.04 16 3 C 0.12 3.28 2.61 44.92 0.12 3.40 16 4 H 0.09 2.29 5.71 -2.38 -0.01 2.27 16 5 N -0.68 -23.66 5.61 -491.57 -2.76 -26.42 16 6 C 0.09 3.78 3.92 86.30 0.34 4.12 16 7 C 0.06 2.79 0.57 -52.93 -0.03 2.76 16 8 C -0.12 -5.60 7.94 71.98 0.57 -5.03 16 9 C -0.11 -5.23 8.09 71.98 0.58 -4.65 16 10 C -0.52 -28.73 8.01 25.60 0.21 -28.53 16 11 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 12 C 0.02 1.23 5.15 84.66 0.44 1.67 16 13 N -0.90 -50.94 9.35 21.45 0.20 -50.74 16 14 Si 0.94 43.91 29.54 68.60 2.03 45.93 16 15 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 18 C -0.15 -4.20 5.22 -10.79 -0.06 -4.26 16 19 H 0.08 2.61 6.67 -2.38 -0.02 2.60 16 20 C -0.17 -3.54 9.26 30.62 0.28 -3.26 16 21 C -0.15 -3.38 6.41 -10.77 -0.07 -3.45 16 22 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 23 C -0.12 -2.26 8.86 71.98 0.64 -1.62 16 24 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 25 H 0.04 1.09 7.54 -2.38 -0.02 1.07 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 1.62 5.67 -2.39 -0.01 1.61 16 28 H 0.08 1.76 6.73 -2.39 -0.02 1.74 16 29 H 0.34 11.66 5.80 -89.69 -0.52 11.14 16 30 H 0.04 1.74 6.74 -2.39 -0.02 1.73 16 31 H 0.02 0.86 5.58 -2.39 -0.01 0.85 16 32 H 0.03 1.37 6.41 -2.38 -0.02 1.35 16 33 H 0.05 2.94 6.07 -2.39 -0.01 2.92 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.05 2.65 6.07 -2.39 -0.01 2.63 16 37 H 0.03 1.54 7.60 -2.39 -0.02 1.52 16 38 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 39 H 0.10 1.95 7.26 -2.38 -0.02 1.93 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.06 1.09 7.02 -2.39 -0.02 1.07 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -57.14 318.45 3.78 -53.36 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.45 Total: 23.75 kcal Atomic # 6 Polarization: -49.75 SS G_CDS: 3.86 Total: -45.89 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -2.56 Total: -77.15 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -57.14 3.78 -53.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414163959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.092 kcal (2) G-P(sol) polarization free energy of solvation -57.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds