Wall clock time and date at job start Thu Apr 9 2020 12:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47447 * 2 1 4 4 H 1.08995 * 109.47369 * 305.79949 * 3 2 1 5 5 N 1.46895 * 109.47418 * 185.78881 * 3 2 1 6 6 C 1.46906 * 110.99468 * 85.34915 * 5 3 2 7 7 C 1.53003 * 109.47028 * 175.62041 * 6 5 3 8 8 C 1.53007 * 109.47102 * 60.00092 * 7 6 5 9 9 C 1.52995 * 109.47007 * 300.00420 * 7 6 5 10 10 C 1.50699 * 109.47253 * 179.97438 * 7 6 5 11 11 H 1.07999 * 120.00058 * 0.02562 * 10 7 6 12 12 C 1.37874 * 120.00115 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99982 * 0.02562 * 12 10 7 14 14 Si 1.86801 * 120.00067 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.46880 * 180.02562 * 14 12 10 16 16 H 1.48495 * 109.46797 * 300.00095 * 14 12 10 17 17 H 1.48495 * 109.47175 * 60.00052 * 14 12 10 18 18 C 1.53003 * 109.46507 * 65.79321 * 3 2 1 19 19 H 1.08994 * 115.55478 * 330.58145 * 18 3 2 20 20 C 1.53002 * 117.49640 * 116.25667 * 18 3 2 21 21 C 1.53003 * 117.49377 * 184.91263 * 18 3 2 22 22 H 1.09006 * 117.49799 * 145.02139 * 21 18 3 23 23 C 1.52995 * 117.50083 * 0.02562 * 21 18 3 24 24 H 1.08993 * 109.47261 * 174.16501 * 1 2 3 25 25 H 1.09002 * 109.46702 * 294.16535 * 1 2 3 26 26 H 1.08999 * 109.47008 * 54.16221 * 1 2 3 27 27 H 1.09003 * 109.46846 * 240.00710 * 2 1 3 28 28 H 1.08996 * 109.47255 * 120.00659 * 2 1 3 29 29 H 1.00901 * 111.00350 * 321.40266 * 5 3 2 30 30 H 1.08997 * 109.46939 * 55.62632 * 6 5 3 31 31 H 1.08999 * 109.47402 * 295.61737 * 6 5 3 32 32 H 1.08994 * 109.47212 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.46850 * 300.00351 * 8 7 6 34 34 H 1.09002 * 109.47166 * 59.99796 * 8 7 6 35 35 H 1.09004 * 109.47054 * 299.99477 * 9 7 6 36 36 H 1.09002 * 109.47622 * 60.00123 * 9 7 6 37 37 H 1.09006 * 109.47437 * 179.97438 * 9 7 6 38 38 H 0.96999 * 120.00243 * 179.97438 * 13 12 10 39 39 H 1.09003 * 117.49822 * 214.97651 * 20 18 3 40 40 H 1.09001 * 117.50256 * 359.97438 * 20 18 3 41 41 H 1.08999 * 109.47096 * 60.00013 * 23 21 18 42 42 H 1.09006 * 109.47205 * 179.97438 * 23 21 18 43 43 H 1.09004 * 109.47098 * 299.99456 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5945 1.9855 -0.8335 5 7 3.5024 1.4448 -0.1397 6 6 3.8962 1.3805 -1.5535 7 6 5.4178 1.4948 -1.6648 8 6 6.0731 0.3430 -0.8999 9 6 5.8741 2.8278 -1.0684 10 6 5.8219 1.4282 -3.1151 11 1 5.0687 1.3160 -3.8809 12 6 7.1530 1.5116 -3.4644 13 7 8.0703 1.6487 -2.5319 14 14 7.6538 1.4297 -5.2622 15 1 9.1308 1.5406 -5.3701 16 1 7.2114 0.1356 -5.8407 17 1 7.0175 2.5472 -6.0047 18 6 1.6524 2.1204 1.3157 19 1 0.7384 1.7532 1.7823 20 6 2.7861 2.5696 2.2398 21 6 1.9727 3.6091 1.4645 22 1 1.2696 4.2212 2.0294 23 6 2.6556 4.3060 0.2861 24 1 -0.3633 -1.0223 -0.1045 25 1 -0.3633 0.4207 0.9376 26 1 -0.3633 0.6017 -0.8331 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.9171 0.6899 0.3858 30 1 3.4294 2.2011 -2.0983 31 1 3.5712 0.4308 -1.9784 32 1 7.1571 0.4242 -0.9796 33 1 5.7809 0.3907 0.1490 34 1 5.7481 -0.6067 -1.3248 35 1 5.4073 3.6484 -1.6133 36 1 5.5819 2.8756 -0.0193 37 1 6.9582 2.9092 -1.1472 38 1 9.0068 1.7070 -2.7776 39 1 2.6177 2.4983 3.3144 40 1 3.8081 2.3819 1.9106 41 1 2.0195 4.2351 -0.5962 42 1 2.8211 5.3553 0.5307 43 1 3.6124 3.8244 0.0839 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414163961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:52 Heat of formation + Delta-G solvation = 4.643074 kcal Electronic energy + Delta-G solvation = -18515.594915 eV Core-core repulsion = 15981.834001 eV Total energy + Delta-G solvation = -2533.760914 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.84718 -36.20885 -34.31694 -32.18457 -30.24855 -28.02709 -25.77189 -25.51376 -25.15811 -23.25431 -22.38540 -20.38128 -18.95093 -18.38845 -15.89434 -15.69240 -15.11661 -14.57645 -14.26991 -14.03314 -13.22531 -12.85004 -12.76175 -12.59132 -12.26949 -11.95294 -11.87682 -11.53235 -11.41972 -11.22618 -11.03043 -10.92083 -10.85980 -10.64135 -10.48127 -10.31691 -10.13682 -9.99088 -9.50735 -9.36759 -9.29151 -9.01562 -8.59510 -8.25348 -7.57098 -5.88596 -3.98903 3.33825 3.38669 3.41373 4.12785 4.45930 4.86769 4.96609 5.11276 5.26279 5.32860 5.36755 5.40413 5.54061 5.72257 5.77564 5.97166 6.00538 6.08352 6.19580 6.24977 6.29268 6.35654 6.42757 6.43360 6.47772 6.57978 6.73174 6.77783 6.94145 7.02240 7.12888 7.21269 7.42939 7.52336 7.79178 7.80648 7.88726 8.05040 8.25863 8.39090 8.59532 9.02740 9.66038 11.11662 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.029695 B = 0.006517 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.697525 B = 4295.675752 C = 4670.323914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.151 4.151 3 C 0.117 3.883 4 H 0.074 0.926 5 N -0.675 5.675 6 C 0.076 3.924 7 C 0.072 3.928 8 C -0.131 4.131 9 C -0.118 4.118 10 C -0.507 4.507 11 H 0.050 0.950 12 C 0.066 3.934 13 N -0.885 5.885 14 Si 0.887 3.113 15 H -0.288 1.288 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.148 4.148 19 H 0.094 0.906 20 C -0.166 4.166 21 C -0.145 4.145 22 H 0.086 0.914 23 C -0.125 4.125 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.337 0.663 30 H 0.054 0.946 31 H 0.011 0.989 32 H 0.081 0.919 33 H 0.011 0.989 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.021 0.979 37 H 0.072 0.928 38 H 0.258 0.742 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 -0.084 7.174 13.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.190 4.190 3 C 0.006 3.994 4 H 0.092 0.908 5 N -0.306 5.306 6 C -0.053 4.053 7 C 0.071 3.929 8 C -0.189 4.189 9 C -0.176 4.176 10 C -0.546 4.546 11 H 0.068 0.932 12 C -0.135 4.135 13 N -0.524 5.524 14 Si 0.715 3.285 15 H -0.214 1.214 16 H -0.205 1.205 17 H -0.204 1.204 18 C -0.167 4.167 19 H 0.112 0.888 20 C -0.203 4.203 21 C -0.163 4.163 22 H 0.104 0.896 23 C -0.182 4.182 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.100 0.900 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.040 0.960 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.912 0.627 7.207 13.092 hybrid contribution -0.071 -1.048 -1.238 1.624 sum -10.983 -0.421 5.969 12.507 Atomic orbital electron populations 1.21736 0.96073 1.00986 1.01589 1.22221 0.96162 0.98716 1.01900 1.21014 0.89581 0.93098 0.95716 0.90837 1.60741 1.05826 1.51263 1.12733 1.22160 0.99385 0.97784 0.85923 1.18049 0.87553 0.92776 0.94506 1.21820 1.04558 0.97352 0.95160 1.21654 1.02896 0.96819 0.96185 1.21097 0.91999 1.49740 0.91774 0.93185 1.24869 0.96678 0.95165 0.96771 1.69825 1.00589 1.50331 1.31611 0.86753 0.77287 0.78449 0.86009 1.21380 1.20529 1.20438 1.22463 0.99210 0.96748 0.98270 0.88760 1.23069 0.98512 1.03182 0.95514 1.22182 1.02503 0.90812 1.00795 0.89589 1.21427 1.02560 0.98720 0.95513 0.93366 0.92780 0.92891 0.92001 0.92080 0.84424 0.92780 0.97040 0.90001 0.97001 0.96399 0.96387 0.95987 0.90903 0.93186 0.90662 0.86699 0.93523 0.93946 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.64 37.16 0.36 -1.26 16 2 C -0.15 -1.97 5.38 -26.73 -0.14 -2.11 16 3 C 0.12 1.68 1.68 -67.71 -0.11 1.56 16 4 H 0.07 1.14 7.35 -51.93 -0.38 0.76 16 5 N -0.68 -11.29 2.13 -106.72 -0.23 -11.52 16 6 C 0.08 1.53 4.40 -3.82 -0.02 1.51 16 7 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 8 C -0.13 -3.06 7.91 37.16 0.29 -2.76 16 9 C -0.12 -2.80 7.55 37.15 0.28 -2.52 16 10 C -0.51 -13.59 8.01 -34.44 -0.28 -13.86 16 11 H 0.05 1.34 7.74 -52.49 -0.41 0.94 16 12 C 0.07 1.79 5.15 -17.82 -0.09 1.69 16 13 N -0.88 -24.46 9.35 55.43 0.52 -23.94 16 14 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.15 -1.96 5.53 -90.62 -0.50 -2.46 16 19 H 0.09 1.13 6.51 -51.93 -0.34 0.79 16 20 C -0.17 -2.26 9.49 -26.69 -0.25 -2.51 16 21 C -0.14 -1.97 6.41 -90.58 -0.58 -2.55 16 22 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 23 C -0.13 -1.89 9.08 37.15 0.34 -1.55 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.55 6.64 -51.93 -0.34 0.21 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.89 7.43 -51.93 -0.39 0.50 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.34 5.71 6.65 -39.29 -0.26 5.45 16 30 H 0.05 1.13 7.95 -51.93 -0.41 0.72 16 31 H 0.01 0.24 7.47 -51.93 -0.39 -0.15 16 32 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 33 H 0.01 0.23 6.68 -51.93 -0.35 -0.11 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.02 0.47 6.97 -51.93 -0.36 0.11 16 37 H 0.07 1.92 6.07 -51.93 -0.32 1.61 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.11 1.79 6.78 -51.93 -0.35 1.43 16 41 H 0.05 0.70 7.84 -51.93 -0.41 0.30 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.63 5.40 -51.93 -0.28 1.35 16 LS Contribution 320.16 15.07 4.82 4.82 Total: -1.00 -25.96 320.16 -8.52 -34.48 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.82 Total: 5.22 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -0.80 Total: -25.21 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.29 Total: -35.46 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -25.96 -8.52 -34.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414163961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.119 kcal (2) G-P(sol) polarization free energy of solvation -25.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds