Wall clock time and date at job start Thu Apr 9 2020 12:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47447 * 2 1 4 4 H 1.08995 * 109.47369 * 305.79949 * 3 2 1 5 5 N 1.46895 * 109.47418 * 185.78881 * 3 2 1 6 6 C 1.46906 * 110.99468 * 85.34915 * 5 3 2 7 7 C 1.53003 * 109.47028 * 175.62041 * 6 5 3 8 8 C 1.53007 * 109.47102 * 60.00092 * 7 6 5 9 9 C 1.52995 * 109.47007 * 300.00420 * 7 6 5 10 10 C 1.50699 * 109.47253 * 179.97438 * 7 6 5 11 11 H 1.07999 * 120.00058 * 0.02562 * 10 7 6 12 12 C 1.37874 * 120.00115 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99982 * 0.02562 * 12 10 7 14 14 Si 1.86801 * 120.00067 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.46880 * 180.02562 * 14 12 10 16 16 H 1.48495 * 109.46797 * 300.00095 * 14 12 10 17 17 H 1.48495 * 109.47175 * 60.00052 * 14 12 10 18 18 C 1.53003 * 109.46507 * 65.79321 * 3 2 1 19 19 H 1.08994 * 115.55478 * 330.58145 * 18 3 2 20 20 C 1.53002 * 117.49640 * 116.25667 * 18 3 2 21 21 C 1.53003 * 117.49377 * 184.91263 * 18 3 2 22 22 H 1.09006 * 117.49799 * 145.02139 * 21 18 3 23 23 C 1.52995 * 117.50083 * 0.02562 * 21 18 3 24 24 H 1.08993 * 109.47261 * 174.16501 * 1 2 3 25 25 H 1.09002 * 109.46702 * 294.16535 * 1 2 3 26 26 H 1.08999 * 109.47008 * 54.16221 * 1 2 3 27 27 H 1.09003 * 109.46846 * 240.00710 * 2 1 3 28 28 H 1.08996 * 109.47255 * 120.00659 * 2 1 3 29 29 H 1.00901 * 111.00350 * 321.40266 * 5 3 2 30 30 H 1.08997 * 109.46939 * 55.62632 * 6 5 3 31 31 H 1.08999 * 109.47402 * 295.61737 * 6 5 3 32 32 H 1.08994 * 109.47212 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.46850 * 300.00351 * 8 7 6 34 34 H 1.09002 * 109.47166 * 59.99796 * 8 7 6 35 35 H 1.09004 * 109.47054 * 299.99477 * 9 7 6 36 36 H 1.09002 * 109.47622 * 60.00123 * 9 7 6 37 37 H 1.09006 * 109.47437 * 179.97438 * 9 7 6 38 38 H 0.96999 * 120.00243 * 179.97438 * 13 12 10 39 39 H 1.09003 * 117.49822 * 214.97651 * 20 18 3 40 40 H 1.09001 * 117.50256 * 359.97438 * 20 18 3 41 41 H 1.08999 * 109.47096 * 60.00013 * 23 21 18 42 42 H 1.09006 * 109.47205 * 179.97438 * 23 21 18 43 43 H 1.09004 * 109.47098 * 299.99456 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5945 1.9855 -0.8335 5 7 3.5024 1.4448 -0.1397 6 6 3.8962 1.3805 -1.5535 7 6 5.4178 1.4948 -1.6648 8 6 6.0731 0.3430 -0.8999 9 6 5.8741 2.8278 -1.0684 10 6 5.8219 1.4282 -3.1151 11 1 5.0687 1.3160 -3.8809 12 6 7.1530 1.5116 -3.4644 13 7 8.0703 1.6487 -2.5319 14 14 7.6538 1.4297 -5.2622 15 1 9.1308 1.5406 -5.3701 16 1 7.2114 0.1356 -5.8407 17 1 7.0175 2.5472 -6.0047 18 6 1.6524 2.1204 1.3157 19 1 0.7384 1.7532 1.7823 20 6 2.7861 2.5696 2.2398 21 6 1.9727 3.6091 1.4645 22 1 1.2696 4.2212 2.0294 23 6 2.6556 4.3060 0.2861 24 1 -0.3633 -1.0223 -0.1045 25 1 -0.3633 0.4207 0.9376 26 1 -0.3633 0.6017 -0.8331 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.9171 0.6899 0.3858 30 1 3.4294 2.2011 -2.0983 31 1 3.5712 0.4308 -1.9784 32 1 7.1571 0.4242 -0.9796 33 1 5.7809 0.3907 0.1490 34 1 5.7481 -0.6067 -1.3248 35 1 5.4073 3.6484 -1.6133 36 1 5.5819 2.8756 -0.0193 37 1 6.9582 2.9092 -1.1472 38 1 9.0068 1.7070 -2.7776 39 1 2.6177 2.4983 3.3144 40 1 3.8081 2.3819 1.9106 41 1 2.0195 4.2351 -0.5962 42 1 2.8211 5.3553 0.5307 43 1 3.6124 3.8244 0.0839 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414163961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:51 Heat of formation + Delta-G solvation = -6.463140 kcal Electronic energy + Delta-G solvation = -18516.076517 eV Core-core repulsion = 15981.834001 eV Total energy + Delta-G solvation = -2534.242515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.07724 -37.87755 -35.62941 -33.82295 -31.87000 -29.21213 -27.44948 -27.26910 -27.00883 -24.79784 -23.40406 -21.50274 -20.36204 -20.01025 -17.82782 -16.84706 -16.78432 -16.08025 -15.67116 -15.43467 -14.58288 -14.42790 -14.24418 -13.97206 -13.74044 -13.29865 -13.14339 -13.03091 -12.89010 -12.82861 -12.60663 -12.42260 -12.32592 -12.17126 -12.06020 -11.99648 -11.85846 -11.41335 -11.25876 -10.82097 -10.60699 -10.56371 -10.40301 -10.31017 -8.97511 -7.95063 -6.11793 1.42584 1.43458 1.50084 2.46836 3.04360 3.26735 3.54273 3.89130 4.05864 4.17637 4.28396 4.38657 4.52680 4.56002 4.68008 4.69797 4.78424 4.89359 4.92542 4.98476 5.08484 5.11383 5.15969 5.18652 5.21878 5.23392 5.32161 5.34774 5.37353 5.45110 5.48461 5.58363 5.61661 5.71926 5.80130 5.86662 6.25601 6.34247 6.41487 6.54362 6.74753 6.99098 7.55706 9.02450 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.029695 B = 0.006517 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.697525 B = 4295.675752 C = 4670.323914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.146 4.146 3 C 0.117 3.883 4 H 0.061 0.939 5 N -0.670 5.670 6 C 0.095 3.905 7 C 0.065 3.935 8 C -0.119 4.119 9 C -0.100 4.100 10 C -0.528 4.528 11 H 0.041 0.959 12 C 0.024 3.976 13 N -0.902 5.902 14 Si 0.940 3.060 15 H -0.285 1.285 16 H -0.276 1.276 17 H -0.277 1.277 18 C -0.141 4.141 19 H 0.116 0.884 20 C -0.166 4.166 21 C -0.147 4.147 22 H 0.106 0.894 23 C -0.123 4.123 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.337 0.663 30 H 0.042 0.958 31 H 0.004 0.996 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.013 0.987 35 H 0.008 0.992 36 H 0.037 0.963 37 H 0.044 0.956 38 H 0.257 0.743 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.040 0.960 42 H 0.049 0.951 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.763 -0.283 8.128 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.185 4.185 3 C 0.007 3.993 4 H 0.080 0.920 5 N -0.300 5.300 6 C -0.034 4.034 7 C 0.064 3.936 8 C -0.177 4.177 9 C -0.158 4.158 10 C -0.567 4.567 11 H 0.060 0.940 12 C -0.175 4.175 13 N -0.542 5.542 14 Si 0.767 3.233 15 H -0.211 1.211 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.159 4.159 19 H 0.134 0.866 20 C -0.203 4.203 21 C -0.165 4.165 22 H 0.124 0.876 23 C -0.181 4.181 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.156 0.844 30 H 0.061 0.939 31 H 0.022 0.978 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.032 0.968 35 H 0.027 0.973 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.495 0.427 8.165 14.932 hybrid contribution 0.410 -0.966 -1.521 1.847 sum -12.085 -0.539 6.645 13.802 Atomic orbital electron populations 1.21701 0.94215 1.01785 1.02236 1.22142 0.97765 0.97262 1.01336 1.21039 0.87726 0.94228 0.96307 0.92033 1.60673 1.07778 1.51252 1.10329 1.21755 0.96863 0.96842 0.87939 1.18082 0.89843 0.92663 0.93021 1.21643 1.02509 0.96966 0.96559 1.21446 1.00699 0.96648 0.97025 1.21452 0.92104 1.49817 0.93342 0.94025 1.25496 0.96806 0.95089 1.00111 1.69961 1.00576 1.50679 1.32942 0.85900 0.76942 0.78396 0.82047 1.21058 1.20193 1.20232 1.22461 0.99827 0.96327 0.97285 0.86578 1.23031 0.97455 1.03213 0.96626 1.22227 1.02822 0.91144 1.00339 0.87617 1.21354 1.01253 0.99228 0.96224 0.92369 0.91410 0.93128 0.93739 0.91469 0.84367 0.93912 0.97818 0.92821 0.94663 0.96782 0.97326 0.94385 0.93719 0.93379 0.88722 0.88811 0.94078 0.93166 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.64 71.98 0.69 -2.06 16 2 C -0.15 -3.54 5.38 30.60 0.16 -3.37 16 3 C 0.12 3.19 1.68 44.92 0.08 3.27 16 4 H 0.06 1.85 7.35 -2.39 -0.02 1.84 16 5 N -0.67 -21.92 2.13 -491.56 -1.05 -22.97 16 6 C 0.10 3.85 4.40 86.30 0.38 4.23 16 7 C 0.06 3.07 0.57 -52.93 -0.03 3.04 16 8 C -0.12 -5.56 7.91 71.98 0.57 -4.99 16 9 C -0.10 -4.83 7.55 71.98 0.54 -4.29 16 10 C -0.53 -28.69 8.01 25.60 0.21 -28.49 16 11 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 12 C 0.02 1.31 5.15 84.65 0.44 1.75 16 13 N -0.90 -50.65 9.35 21.45 0.20 -50.45 16 14 Si 0.94 43.69 29.54 68.60 2.03 45.72 16 15 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 C -0.14 -3.32 5.53 -10.79 -0.06 -3.38 16 19 H 0.12 2.31 6.51 -2.39 -0.02 2.29 16 20 C -0.17 -4.12 9.49 30.62 0.29 -3.83 16 21 C -0.15 -3.64 6.41 -10.77 -0.07 -3.71 16 22 H 0.11 2.24 8.14 -2.38 -0.02 2.23 16 23 C -0.12 -3.60 9.08 71.98 0.65 -2.95 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.14 6.64 -2.39 -0.02 1.12 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.04 1.23 7.43 -2.39 -0.02 1.21 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.34 11.04 6.65 -89.69 -0.60 10.44 16 30 H 0.04 1.81 7.95 -2.39 -0.02 1.79 16 31 H 0.00 0.15 7.47 -2.39 -0.02 0.13 16 32 H 0.05 2.82 6.07 -2.39 -0.01 2.81 16 33 H 0.03 1.43 6.68 -2.39 -0.02 1.42 16 34 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.04 1.66 6.97 -2.39 -0.02 1.64 16 37 H 0.04 2.39 6.07 -2.38 -0.01 2.38 16 38 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.09 2.77 6.78 -2.39 -0.02 2.76 16 41 H 0.04 1.21 7.84 -2.39 -0.02 1.19 16 42 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.07 2.32 5.40 -2.38 -0.01 2.31 16 Total: -1.00 -55.33 320.16 5.39 -49.93 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.36 Total: 22.54 kcal Atomic # 6 Polarization: -48.63 SS G_CDS: 3.85 Total: -44.77 kcal Atomic # 7 Polarization: -72.57 SS G_CDS: -0.85 Total: -73.42 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -55.33 5.39 -49.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414163961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.470 kcal (2) G-P(sol) polarization free energy of solvation -55.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds