Wall clock time and date at job start Thu Apr 9 2020 12:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53002 * 109.46886 * 119.99346 * 2 1 3 5 5 C 1.50706 * 109.47153 * 184.99546 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 N 1.46894 * 109.47018 * 239.99269 * 2 1 3 14 14 C 1.46897 * 111.00472 * 306.04930 * 13 2 1 15 15 C 1.46900 * 111.00031 * 70.00259 * 13 2 1 16 16 C 1.52997 * 109.47346 * 169.99593 * 15 13 2 17 17 C 1.52999 * 109.47314 * 294.99929 * 16 15 13 18 18 C 1.53000 * 109.46849 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47121 * 60.00573 * 18 17 16 20 20 C 1.53000 * 109.47163 * 299.99461 * 19 18 17 21 21 C 1.53005 * 109.46999 * 60.00234 * 20 19 18 22 22 H 1.09007 * 109.46878 * 300.00364 * 1 2 3 23 23 H 1.09001 * 109.46923 * 60.00438 * 1 2 3 24 24 H 1.08995 * 109.47190 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47178 * 65.00336 * 4 2 1 26 26 H 1.08993 * 109.47411 * 305.00018 * 4 2 1 27 27 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 28 28 H 1.09004 * 109.46822 * 59.99631 * 14 13 2 29 29 H 1.08997 * 109.47606 * 180.02562 * 14 13 2 30 30 H 1.09007 * 109.46996 * 299.99993 * 14 13 2 31 31 H 1.09001 * 109.46982 * 290.00138 * 15 13 2 32 32 H 1.09005 * 109.47100 * 49.99755 * 15 13 2 33 33 H 1.08997 * 109.46776 * 55.00498 * 16 15 13 34 34 H 1.08994 * 109.47172 * 300.00092 * 17 16 15 35 35 H 1.08997 * 109.47043 * 60.00405 * 17 16 15 36 36 H 1.08994 * 109.47493 * 300.00121 * 18 17 16 37 37 H 1.09003 * 109.46720 * 180.02562 * 18 17 16 38 38 H 1.09007 * 109.47484 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.47768 * 59.99547 * 19 18 17 40 40 H 1.09001 * 109.47341 * 300.00716 * 20 19 18 41 41 H 1.08997 * 109.47446 * 180.02562 * 20 19 18 42 42 H 1.09003 * 109.47058 * 180.02562 * 21 20 19 43 43 H 1.08994 * 109.47305 * 60.00129 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0856 0.5396 7 6 4.2304 -1.1934 2.3579 8 7 3.5760 -1.8334 3.3023 9 14 6.0921 -1.0611 2.4369 10 1 6.5866 -1.7559 3.6526 11 1 6.6848 -1.6922 1.2304 12 1 6.4847 0.3700 2.4905 13 7 2.0196 -0.6926 -1.1993 14 6 1.4342 -2.0356 -1.3076 15 6 1.7529 0.0970 -2.4090 16 6 2.4885 -0.5260 -3.5972 17 6 3.9984 -0.4244 -3.3723 18 6 4.7339 -1.0480 -4.5603 19 6 4.3579 -0.3015 -5.8417 20 6 2.8479 -0.4030 -6.0666 21 6 2.1123 0.2205 -4.8787 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.7516 -1.7714 1.2058 26 1 1.6053 -0.2616 2.1370 27 1 2.6093 -1.9019 3.2614 28 1 0.3489 -1.9549 -1.3692 29 1 1.8139 -2.5263 -2.2038 30 1 1.7058 -2.6222 -0.4299 31 1 0.6814 0.1051 -2.6087 32 1 2.1025 1.1187 -2.2604 33 1 2.2047 -1.5741 -3.6911 34 1 4.2821 0.6237 -3.2784 35 1 4.2665 -0.9566 -2.4597 36 1 4.4502 -2.0962 -4.6538 37 1 5.8097 -0.9760 -4.3999 38 1 4.8822 -0.7455 -6.6881 39 1 4.6416 0.7467 -5.7483 40 1 2.5640 -1.4513 -6.1600 41 1 2.5800 0.1284 -6.9798 42 1 1.0365 0.1478 -5.0387 43 1 2.3960 1.2687 -4.7852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429717240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:58 Heat of formation + Delta-G solvation = -34.510871 kcal Electronic energy + Delta-G solvation = -18282.766062 eV Core-core repulsion = 15747.307306 eV Total energy + Delta-G solvation = -2535.458756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.01569 -37.22305 -33.37171 -31.85769 -30.59310 -29.55338 -27.03366 -26.40297 -24.03682 -22.70254 -22.36682 -20.65435 -19.45737 -18.84299 -16.57783 -15.69528 -15.15681 -14.70116 -14.12558 -13.96260 -13.74322 -13.61574 -13.33670 -12.89517 -12.85135 -12.13318 -11.98842 -11.87958 -11.52150 -11.38410 -11.16059 -11.02126 -10.97139 -10.85669 -10.65915 -10.63042 -10.31024 -10.04781 -9.99517 -9.83957 -9.82024 -9.33217 -8.40766 -8.17562 -7.42130 -6.17784 -3.82701 3.53376 3.56013 3.74118 4.51456 4.68449 4.79119 4.89975 4.97064 5.26090 5.41156 5.52568 5.58303 5.61311 5.63729 5.68165 5.72675 5.73994 5.82008 5.84729 5.93255 5.96316 6.03830 6.08754 6.12486 6.14384 6.26047 6.31336 6.34705 6.41697 6.52310 6.57852 6.66817 6.74231 6.85935 6.90674 7.32573 7.51868 7.88619 7.97504 8.43892 8.70779 9.07981 9.85919 11.22445 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.007053 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.019177 B = 3968.744645 C = 4928.832840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.094 3.906 3 H 0.068 0.932 4 C 0.017 3.983 5 C -0.568 4.568 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.924 5.924 9 Si 1.066 2.934 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.291 1.291 13 N -0.509 5.509 14 C 0.024 3.976 15 C 0.058 3.942 16 C -0.081 4.081 17 C -0.107 4.107 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.114 4.114 22 H 0.054 0.946 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.009 0.991 26 H 0.006 0.994 27 H 0.265 0.735 28 H 0.015 0.985 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.021 0.979 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 2.843 -16.602 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.015 4.015 3 H 0.086 0.914 4 C -0.020 4.020 5 C -0.607 4.607 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.562 5.562 9 Si 0.896 3.104 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.217 1.217 13 N -0.232 5.232 14 C -0.124 4.124 15 C -0.070 4.070 16 C -0.100 4.100 17 C -0.144 4.144 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.152 4.152 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.028 0.972 26 H 0.024 0.976 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.110 2.374 -15.648 15.866 hybrid contribution -2.331 0.542 -1.027 2.604 sum -3.441 2.915 -16.676 17.275 Atomic orbital electron populations 1.22540 0.99961 1.01289 1.00627 1.21754 0.89768 0.98186 0.91749 0.91378 1.19306 0.97443 0.94734 0.90486 1.21947 0.91467 1.37069 1.10215 0.92810 1.25750 1.06541 0.94128 0.93011 1.70792 1.09974 1.41155 1.34296 0.83578 0.75003 0.76032 0.75820 1.21178 1.21569 1.21744 1.62058 1.58128 1.01964 1.01019 1.22410 0.95731 0.91949 1.02301 1.22153 0.96540 0.97626 0.90715 1.21160 0.96217 0.99567 0.93029 1.21472 0.93607 1.00992 0.98358 1.21564 0.99853 0.99462 0.94917 1.21538 0.95759 1.00589 0.97722 1.21496 0.95534 1.00751 0.97589 1.21568 0.99221 0.99729 0.94661 0.92740 0.94082 0.92811 0.97247 0.97552 0.92496 0.96648 0.92514 0.90691 0.96047 0.91568 0.91415 0.92663 0.89812 0.92417 0.92357 0.92715 0.92264 0.92300 0.92605 0.92639 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 8.44 37.16 0.31 -2.95 16 2 C 0.09 1.95 2.26 -67.72 -0.15 1.79 16 3 H 0.07 1.47 7.93 -51.93 -0.41 1.05 16 4 C 0.02 0.44 3.68 -27.88 -0.10 0.34 16 5 C -0.57 -16.19 8.84 -34.44 -0.30 -16.49 16 6 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.01 0.22 5.46 -17.82 -0.10 0.12 16 8 N -0.92 -28.81 13.65 55.43 0.76 -28.05 16 9 Si 1.07 26.14 29.90 -169.99 -5.08 21.06 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.51 -9.72 3.88 -234.89 -0.91 -10.63 16 14 C 0.02 0.44 8.59 60.06 0.52 0.95 16 15 C 0.06 0.92 3.92 -3.83 -0.01 0.90 16 16 C -0.08 -1.12 2.11 -90.62 -0.19 -1.31 16 17 C -0.11 -1.57 5.09 -26.73 -0.14 -1.71 16 18 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 19 C -0.12 -1.27 5.92 -26.73 -0.16 -1.42 16 20 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 21 C -0.11 -1.31 5.21 -26.73 -0.14 -1.45 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.04 0.64 6.91 -51.93 -0.36 0.29 16 24 H 0.05 0.94 6.33 -51.93 -0.33 0.61 16 25 H 0.01 0.25 6.21 -51.93 -0.32 -0.07 16 26 H 0.01 0.17 8.00 -51.93 -0.42 -0.24 16 27 H 0.26 8.23 7.22 -40.82 -0.29 7.93 16 28 H 0.02 0.25 6.21 -51.93 -0.32 -0.07 16 29 H 0.06 0.92 6.21 -51.93 -0.32 0.59 16 30 H 0.07 1.54 6.37 -51.93 -0.33 1.21 16 31 H 0.02 0.33 7.06 -51.93 -0.37 -0.04 16 32 H 0.07 1.06 7.93 -51.93 -0.41 0.65 16 33 H 0.07 0.97 6.26 -51.93 -0.33 0.64 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.50 7.75 -51.93 -0.40 1.10 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 319.68 15.07 4.82 4.82 Total: -1.00 -29.95 319.68 -9.25 -39.20 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -8.04 Total: -2.16 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -0.78 Total: -24.24 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.15 Total: -38.68 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.08 Total: 21.06 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.95 -9.25 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429717240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.689 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds