Wall clock time and date at job start Thu Apr 9 2020 12:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53002 * 109.46886 * 119.99346 * 2 1 3 5 5 C 1.50706 * 109.47153 * 184.99546 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 N 1.46894 * 109.47018 * 239.99269 * 2 1 3 14 14 C 1.46897 * 111.00472 * 306.04930 * 13 2 1 15 15 C 1.46900 * 111.00031 * 70.00259 * 13 2 1 16 16 C 1.52997 * 109.47346 * 169.99593 * 15 13 2 17 17 C 1.52999 * 109.47314 * 294.99929 * 16 15 13 18 18 C 1.53000 * 109.46849 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47121 * 60.00573 * 18 17 16 20 20 C 1.53000 * 109.47163 * 299.99461 * 19 18 17 21 21 C 1.53005 * 109.46999 * 60.00234 * 20 19 18 22 22 H 1.09007 * 109.46878 * 300.00364 * 1 2 3 23 23 H 1.09001 * 109.46923 * 60.00438 * 1 2 3 24 24 H 1.08995 * 109.47190 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47178 * 65.00336 * 4 2 1 26 26 H 1.08993 * 109.47411 * 305.00018 * 4 2 1 27 27 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 28 28 H 1.09004 * 109.46822 * 59.99631 * 14 13 2 29 29 H 1.08997 * 109.47606 * 180.02562 * 14 13 2 30 30 H 1.09007 * 109.46996 * 299.99993 * 14 13 2 31 31 H 1.09001 * 109.46982 * 290.00138 * 15 13 2 32 32 H 1.09005 * 109.47100 * 49.99755 * 15 13 2 33 33 H 1.08997 * 109.46776 * 55.00498 * 16 15 13 34 34 H 1.08994 * 109.47172 * 300.00092 * 17 16 15 35 35 H 1.08997 * 109.47043 * 60.00405 * 17 16 15 36 36 H 1.08994 * 109.47493 * 300.00121 * 18 17 16 37 37 H 1.09003 * 109.46720 * 180.02562 * 18 17 16 38 38 H 1.09007 * 109.47484 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.47768 * 59.99547 * 19 18 17 40 40 H 1.09001 * 109.47341 * 300.00716 * 20 19 18 41 41 H 1.08997 * 109.47446 * 180.02562 * 20 19 18 42 42 H 1.09003 * 109.47058 * 180.02562 * 21 20 19 43 43 H 1.08994 * 109.47305 * 60.00129 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0856 0.5396 7 6 4.2304 -1.1934 2.3579 8 7 3.5760 -1.8334 3.3023 9 14 6.0921 -1.0611 2.4369 10 1 6.5866 -1.7559 3.6526 11 1 6.6848 -1.6922 1.2304 12 1 6.4847 0.3700 2.4905 13 7 2.0196 -0.6926 -1.1993 14 6 1.4342 -2.0356 -1.3076 15 6 1.7529 0.0970 -2.4090 16 6 2.4885 -0.5260 -3.5972 17 6 3.9984 -0.4244 -3.3723 18 6 4.7339 -1.0480 -4.5603 19 6 4.3579 -0.3015 -5.8417 20 6 2.8479 -0.4030 -6.0666 21 6 2.1123 0.2205 -4.8787 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.7516 -1.7714 1.2058 26 1 1.6053 -0.2616 2.1370 27 1 2.6093 -1.9019 3.2614 28 1 0.3489 -1.9549 -1.3692 29 1 1.8139 -2.5263 -2.2038 30 1 1.7058 -2.6222 -0.4299 31 1 0.6814 0.1051 -2.6087 32 1 2.1025 1.1187 -2.2604 33 1 2.2047 -1.5741 -3.6911 34 1 4.2821 0.6237 -3.2784 35 1 4.2665 -0.9566 -2.4597 36 1 4.4502 -2.0962 -4.6538 37 1 5.8097 -0.9760 -4.3999 38 1 4.8822 -0.7455 -6.6881 39 1 4.6416 0.7467 -5.7483 40 1 2.5640 -1.4513 -6.1600 41 1 2.5800 0.1284 -6.9798 42 1 1.0365 0.1478 -5.0387 43 1 2.3960 1.2687 -4.7852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429717240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:57 Heat of formation + Delta-G solvation = -50.803818 kcal Electronic energy + Delta-G solvation = -18283.472578 eV Core-core repulsion = 15747.307306 eV Total energy + Delta-G solvation = -2536.165272 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.25948 -38.55849 -35.37033 -33.35108 -31.58195 -30.97703 -28.91565 -27.78647 -25.55740 -24.63328 -23.35454 -21.82298 -20.50825 -20.45609 -18.77599 -17.13524 -16.28611 -15.99140 -15.63210 -15.37356 -15.16062 -14.93757 -14.80226 -14.54666 -14.27449 -13.51387 -13.13437 -13.04688 -12.96733 -12.93198 -12.75667 -12.61184 -12.51221 -12.26626 -12.04898 -11.93460 -11.92251 -11.62488 -11.35500 -11.15924 -10.85724 -10.76582 -10.57968 -10.44919 -8.89463 -8.55047 -6.20085 1.52980 1.61915 1.80599 2.62218 3.09796 3.30732 3.77038 3.93515 3.97643 4.09720 4.22911 4.27846 4.39482 4.42961 4.47493 4.53747 4.58719 4.62623 4.71138 4.72411 4.81410 4.85458 4.86377 4.91827 5.00923 5.09112 5.11530 5.17446 5.23028 5.24770 5.31581 5.34937 5.38881 5.49135 5.52299 5.65156 5.67160 6.13946 6.34565 6.39719 6.46126 6.75432 7.56809 8.85711 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.007053 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.019177 B = 3968.744645 C = 4928.832840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.059 0.941 4 C 0.021 3.979 5 C -0.572 4.572 6 H 0.048 0.952 7 C -0.047 4.047 8 N -0.950 5.950 9 Si 1.112 2.888 10 H -0.287 1.287 11 H -0.274 1.274 12 H -0.272 1.272 13 N -0.530 5.530 14 C 0.032 3.968 15 C 0.062 3.938 16 C -0.075 4.075 17 C -0.104 4.104 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.109 4.109 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.053 0.947 25 H -0.008 1.008 26 H -0.016 1.016 27 H 0.251 0.749 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.991 3.551 -19.155 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.009 4.009 3 H 0.077 0.923 4 C -0.016 4.016 5 C -0.611 4.611 6 H 0.066 0.934 7 C -0.242 4.242 8 N -0.589 5.589 9 Si 0.935 3.065 10 H -0.212 1.212 11 H -0.199 1.199 12 H -0.197 1.197 13 N -0.253 5.253 14 C -0.116 4.116 15 C -0.066 4.066 16 C -0.094 4.094 17 C -0.142 4.142 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.147 4.147 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.002 0.998 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.157 3.093 -18.225 18.522 hybrid contribution -2.340 0.325 -0.239 2.374 sum -3.496 3.418 -18.464 19.101 Atomic orbital electron populations 1.22392 0.97186 1.01732 1.01987 1.21477 0.91955 0.96840 0.90584 0.92319 1.19208 0.96060 0.94091 0.92267 1.22252 0.93095 1.36113 1.09618 0.93372 1.27209 1.10764 0.93495 0.92729 1.70926 1.09282 1.43125 1.35577 0.82986 0.70092 0.77172 0.76259 1.21249 1.19948 1.19718 1.61940 1.59024 1.02680 1.01701 1.22308 0.96784 0.91133 1.01415 1.22197 0.97686 0.96960 0.89760 1.21118 0.95082 0.99643 0.93530 1.21390 0.94877 1.00185 0.97737 1.21537 0.99504 0.99525 0.95010 1.21521 0.96389 1.00422 0.96946 1.21497 0.94858 1.01057 0.97721 1.21529 1.00134 0.99438 0.93555 0.92630 0.91446 0.92779 0.98960 0.99757 0.93935 0.94912 0.90761 0.94182 0.94548 0.92033 0.91687 0.93220 0.93719 0.92477 0.92470 0.91166 0.92145 0.92115 0.90707 0.91469 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.91 8.44 71.98 0.61 -5.30 16 2 C 0.10 4.17 2.26 44.92 0.10 4.27 16 3 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 4 C 0.02 1.10 3.68 29.85 0.11 1.21 16 5 C -0.57 -33.39 8.84 25.60 0.23 -33.17 16 6 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 7 C -0.05 -2.78 5.46 84.65 0.46 -2.32 16 8 N -0.95 -60.79 13.65 21.45 0.29 -60.50 16 9 Si 1.11 52.91 29.90 68.60 2.05 54.96 16 10 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 N -0.53 -20.10 3.88 -897.06 -3.48 -23.59 16 14 C 0.03 1.12 8.59 127.69 1.10 2.22 16 15 C 0.06 1.84 3.92 86.30 0.34 2.18 16 16 C -0.07 -1.94 2.11 -10.79 -0.02 -1.96 16 17 C -0.10 -3.00 5.09 30.59 0.16 -2.85 16 18 C -0.12 -2.77 5.92 30.59 0.18 -2.59 16 19 C -0.12 -2.14 5.92 30.59 0.18 -1.96 16 20 C -0.11 -1.96 5.92 30.60 0.18 -1.78 16 21 C -0.11 -2.16 5.21 30.60 0.16 -2.00 16 22 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 23 H 0.07 1.94 6.91 -2.39 -0.02 1.92 16 24 H 0.05 1.82 6.33 -2.39 -0.02 1.81 16 25 H -0.01 -0.44 6.21 -2.39 -0.01 -0.45 16 26 H -0.02 -0.89 8.00 -2.39 -0.02 -0.91 16 27 H 0.25 16.28 7.22 -92.71 -0.67 15.61 16 28 H 0.03 1.04 6.21 -2.39 -0.01 1.02 16 29 H 0.07 2.34 6.21 -2.39 -0.01 2.32 16 30 H 0.04 1.68 6.37 -2.38 -0.02 1.67 16 31 H 0.04 0.99 7.06 -2.39 -0.02 0.97 16 32 H 0.06 1.89 7.93 -2.38 -0.02 1.87 16 33 H 0.06 1.72 6.26 -2.39 -0.01 1.71 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.04 1.62 7.75 -2.39 -0.02 1.60 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -65.61 319.68 3.68 -61.94 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.04 Total: 11.22 kcal Atomic # 6 Polarization: -47.81 SS G_CDS: 3.78 Total: -44.03 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -3.19 Total: -84.08 kcal Atomic # 14 Polarization: 52.91 SS G_CDS: 2.05 Total: 54.96 kcal Total: -65.61 3.68 -61.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429717240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.132 kcal (2) G-P(sol) polarization free energy of solvation -65.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds