Wall clock time and date at job start Thu Apr 9 2020 12:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.53006 * 109.46846 * 185.00166 * 4 2 1 6 6 C 1.50701 * 109.47024 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99939 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99968 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99808 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47564 * 0.02562 * 10 8 6 12 12 H 1.48510 * 109.47066 * 120.00211 * 10 8 6 13 13 H 1.48500 * 109.47281 * 239.99824 * 10 8 6 14 14 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 15 15 C 1.46901 * 110.99913 * 85.00348 * 14 2 1 16 16 H 1.08997 * 109.47020 * 324.99207 * 15 14 2 17 17 C 1.52995 * 109.47559 * 84.99842 * 15 14 2 18 18 C 1.53005 * 109.47226 * 204.99952 * 15 14 2 19 19 C 1.54271 * 110.02795 * 297.90836 * 18 15 14 20 20 C 1.54965 * 104.15530 * 217.13576 * 19 18 15 21 21 C 1.54891 * 102.78016 * 37.88607 * 20 19 18 22 22 C 1.53871 * 110.03571 * 180.68836 * 18 15 14 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.09002 * 109.47069 * 304.99600 * 4 2 1 27 27 H 1.08991 * 109.47625 * 64.99919 * 4 2 1 28 28 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 29 29 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 30 30 H 0.96998 * 120.00041 * 179.97438 * 9 8 6 31 31 H 1.00902 * 110.99924 * 208.95338 * 14 2 1 32 32 H 1.08997 * 109.47472 * 59.99642 * 17 15 14 33 33 H 1.09001 * 109.47409 * 180.02562 * 17 15 14 34 34 H 1.09007 * 109.46927 * 299.99830 * 17 15 14 35 35 H 1.09005 * 110.01582 * 59.29282 * 18 15 14 36 36 H 1.09001 * 110.48727 * 335.77756 * 19 18 15 37 37 H 1.09000 * 110.49068 * 98.42716 * 19 18 15 38 38 H 1.09005 * 110.72356 * 279.57151 * 20 19 18 39 39 H 1.08999 * 110.92313 * 156.29687 * 20 19 18 40 40 H 1.08999 * 110.48843 * 203.40507 * 21 20 19 41 41 H 1.08994 * 110.59970 * 80.81997 * 21 20 19 42 42 H 1.09003 * 110.03005 * 238.56959 * 22 18 15 43 43 H 1.09001 * 110.03013 * 359.94623 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0672 -1.3232 2.5444 7 1 3.3687 -1.8038 3.2135 8 6 5.4185 -1.3601 2.8157 9 7 6.2691 -0.7762 2.0001 10 14 6.0411 -2.2407 4.3409 11 1 4.8912 -2.8124 5.0866 12 1 6.9630 -3.3338 3.9397 13 1 6.7644 -1.2767 5.2085 14 7 2.0196 -0.6925 -1.1994 15 6 2.0824 0.2226 -2.3468 16 1 1.2575 0.9329 -2.2907 17 6 3.4110 0.9809 -2.3224 18 6 1.9769 -0.5796 -3.6454 19 6 3.1678 -1.5531 -3.7633 20 6 3.5138 -1.5475 -5.2738 21 6 3.2970 -0.0658 -5.6695 22 6 2.0586 0.3654 -4.8570 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.6054 -0.2618 2.1370 27 1 1.7516 -1.7715 1.2056 28 1 3.9994 -1.0728 0.4259 29 1 3.8532 0.4370 1.3573 30 1 7.2197 -0.8019 2.1912 31 1 2.9172 -1.1205 -1.0287 32 1 4.2359 0.2706 -2.3786 33 1 3.4574 1.6603 -3.1735 34 1 3.4861 1.5525 -1.3973 35 1 1.0383 -1.1335 -3.6666 36 1 4.0136 -1.1939 -3.1771 37 1 2.8766 -2.5530 -3.4415 38 1 2.8365 -2.1981 -5.8271 39 1 4.5502 -1.8433 -5.4368 40 1 3.1005 0.0189 -6.7383 41 1 4.1630 0.5356 -5.3931 42 1 1.1601 0.2695 -5.4666 43 1 2.1725 1.3957 -4.5199 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:17 Heat of formation + Delta-G solvation = -41.032258 kcal Electronic energy + Delta-G solvation = -17976.049709 eV Core-core repulsion = 15440.308164 eV Total energy + Delta-G solvation = -2535.741545 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.11288 -36.65721 -33.50156 -32.25732 -29.50737 -28.76274 -27.97849 -27.21065 -25.06605 -22.40300 -21.34166 -20.56935 -19.36140 -18.57743 -16.38062 -16.02602 -15.32851 -15.05282 -14.49688 -14.31147 -13.79519 -13.46533 -12.90526 -12.61535 -12.45060 -12.26312 -11.67347 -11.61809 -11.56432 -11.39441 -11.14421 -11.05013 -10.96133 -10.87380 -10.70053 -10.51593 -10.43022 -10.33439 -10.04542 -9.98911 -9.70711 -9.23825 -8.99009 -8.34673 -7.83814 -5.99849 -4.01565 3.31276 3.38919 3.43388 4.46740 4.50568 4.75297 4.81726 4.99787 5.32227 5.36626 5.41828 5.53568 5.59593 5.63270 5.75165 5.78164 5.80279 5.82311 5.85770 5.90375 5.99527 6.03246 6.10584 6.20797 6.27350 6.36231 6.38936 6.41952 6.43782 6.52826 6.59041 6.66061 6.74140 6.96828 7.12690 7.63832 7.65312 7.84207 7.98026 8.05457 8.44236 9.05487 9.62645 11.11371 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.025765 B = 0.005605 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.487952 B = 4994.549406 C = 5673.138322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.036 0.964 4 C -0.115 4.115 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 N -0.682 5.682 15 C 0.091 3.909 16 H 0.068 0.932 17 C -0.185 4.185 18 C -0.077 4.077 19 C -0.121 4.121 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.122 4.122 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.015 0.985 29 H 0.011 0.989 30 H 0.259 0.741 31 H 0.352 0.648 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.867 2.162 -13.176 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.054 0.946 4 C -0.153 4.153 5 C -0.015 4.015 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.315 5.315 15 C -0.019 4.019 16 H 0.087 0.913 17 C -0.244 4.244 18 C -0.096 4.096 19 C -0.158 4.158 20 C -0.163 4.163 21 C -0.161 4.161 22 C -0.160 4.160 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.174 0.826 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.307 1.937 -13.344 15.837 hybrid contribution 1.295 0.152 1.081 1.694 sum -7.012 2.090 -12.263 14.280 Atomic orbital electron populations 1.21794 0.95978 1.01582 0.99977 1.21581 0.94274 0.96168 0.90744 0.94550 1.21825 0.99647 0.99404 0.94389 1.19117 0.88809 0.96758 0.96846 1.21293 0.91938 1.34079 1.08292 0.92666 1.25015 0.97092 0.95633 0.96672 1.69970 1.02273 1.44309 1.36982 0.86563 0.78859 0.79487 0.83267 1.19735 1.21028 1.21089 1.60685 1.34710 1.32027 1.04122 1.21557 0.96289 0.93067 0.91029 0.91335 1.22601 0.99044 1.01116 1.01597 1.21715 0.99042 0.95755 0.93064 1.22487 0.98303 0.99609 0.95439 1.22510 1.00788 0.96210 0.96815 1.22337 0.98170 0.96627 0.98953 1.22248 0.97735 0.99623 0.96401 0.93891 0.92476 0.93228 0.92923 0.92561 0.96642 0.97053 0.93139 0.82615 0.91744 0.92641 0.92624 0.90907 0.90963 0.91570 0.92013 0.92016 0.92377 0.91821 0.92384 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.40 37.16 0.35 -1.68 16 2 C 0.08 1.44 2.46 -67.72 -0.17 1.27 16 3 H 0.04 0.67 7.11 -51.93 -0.37 0.30 16 4 C -0.11 -2.39 4.74 -26.73 -0.13 -2.52 16 5 C 0.02 0.56 4.80 -27.88 -0.13 0.42 16 6 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 7 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 10 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 N -0.68 -11.41 5.81 -99.74 -0.58 -11.99 16 15 C 0.09 1.30 2.11 -67.71 -0.14 1.16 16 16 H 0.07 0.97 7.11 -51.93 -0.37 0.60 16 17 C -0.19 -2.74 8.60 37.16 0.32 -2.42 16 18 C -0.08 -0.97 2.98 -89.50 -0.27 -1.24 16 19 C -0.12 -1.57 5.68 -25.03 -0.14 -1.72 16 20 C -0.13 -1.39 6.91 -24.70 -0.17 -1.56 16 21 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 22 C -0.12 -1.33 5.91 -25.62 -0.15 -1.48 16 23 H 0.04 0.59 7.43 -51.93 -0.39 0.21 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.02 0.41 6.43 -51.93 -0.33 0.08 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.35 6.62 5.95 -39.29 -0.23 6.39 16 32 H 0.06 1.02 5.97 -51.93 -0.31 0.71 16 33 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 34 H 0.05 0.92 7.43 -51.93 -0.39 0.53 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.04 5.61 -51.93 -0.29 0.75 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.70 6.28 -51.93 -0.33 0.37 16 LS Contribution 324.47 15.07 4.89 4.89 Total: -1.00 -28.64 324.47 -9.14 -37.79 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.95 Total: 3.34 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -1.21 Total: -24.70 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.16 Total: -38.07 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.64 -9.14 -37.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.245 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds