Wall clock time and date at job start Thu Apr 9 2020 12:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46759 * 2 1 4 4 C 1.52998 * 109.46975 * 120.00368 * 2 1 3 5 5 C 1.53009 * 109.46706 * 184.99775 * 4 2 1 6 6 C 1.50696 * 109.46614 * 179.97438 * 5 4 2 7 7 H 1.07994 * 120.00378 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99824 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00069 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00114 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46993 * 60.00829 * 10 8 6 12 12 H 1.48506 * 109.47005 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47404 * 300.00308 * 10 8 6 14 14 N 1.46902 * 109.46874 * 240.00776 * 2 1 3 15 15 C 1.46898 * 111.00250 * 101.17169 * 14 2 1 16 16 H 1.08997 * 109.47162 * 28.16161 * 15 14 2 17 17 C 1.52997 * 109.46792 * 148.15893 * 15 14 2 18 18 C 1.52999 * 109.47011 * 180.02562 * 17 15 14 19 19 C 1.53008 * 109.46987 * 299.99849 * 18 17 15 20 20 H 1.08995 * 109.47195 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.46671 * 300.00156 * 19 18 17 22 22 C 1.52999 * 109.46935 * 59.99878 * 19 18 17 23 23 C 1.52996 * 109.47175 * 268.15981 * 15 14 2 24 24 H 1.09006 * 109.46921 * 293.38250 * 1 2 3 25 25 H 1.09007 * 109.47108 * 53.37972 * 1 2 3 26 26 H 1.08999 * 109.47079 * 173.38393 * 1 2 3 27 27 H 1.08997 * 109.47062 * 304.99490 * 4 2 1 28 28 H 1.08998 * 109.46685 * 65.00459 * 4 2 1 29 29 H 1.09000 * 109.47175 * 300.00216 * 5 4 2 30 30 H 1.09000 * 109.46646 * 60.00179 * 5 4 2 31 31 H 0.96999 * 120.00267 * 179.97438 * 9 8 6 32 32 H 1.00903 * 110.99629 * 337.21395 * 14 2 1 33 33 H 1.09001 * 109.47527 * 60.00141 * 17 15 14 34 34 H 1.09002 * 109.47228 * 299.99701 * 17 15 14 35 35 H 1.09001 * 109.47818 * 59.99913 * 18 17 15 36 36 H 1.09005 * 109.47201 * 180.02562 * 18 17 15 37 37 H 1.08995 * 109.47411 * 60.00010 * 21 19 18 38 38 H 1.09006 * 109.46655 * 180.02562 * 21 19 18 39 39 H 1.08995 * 109.47403 * 299.99577 * 21 19 18 40 40 H 1.08997 * 109.46864 * 60.00163 * 22 19 18 41 41 H 1.09002 * 109.47041 * 180.02562 * 22 19 18 42 42 H 1.08995 * 109.47526 * 59.99809 * 23 15 14 43 43 H 1.09001 * 109.46937 * 299.99732 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 6 4.0671 -1.3233 2.5443 7 1 3.3687 -1.8038 3.2133 8 6 5.4184 -1.3603 2.8156 9 7 6.2691 -0.7756 2.0005 10 14 6.0410 -2.2397 4.3415 11 1 5.6476 -3.6705 4.2834 12 1 7.5211 -2.1351 4.4040 13 1 5.4494 -1.6123 5.5505 14 7 2.0196 -0.6924 -1.1996 15 6 2.4456 0.2690 -2.2253 16 1 2.7770 1.1897 -1.7452 17 6 3.5985 -0.3271 -3.0355 18 6 4.0426 0.6744 -4.1035 19 6 2.8685 0.9800 -5.0358 20 1 3.1850 1.6931 -5.7969 21 6 2.4033 -0.3122 -5.7103 22 6 1.7157 1.5760 -4.2256 23 6 1.2714 0.5741 -3.1575 24 1 -0.3633 0.4079 0.9433 25 1 -0.3634 0.6130 -0.8249 26 1 -0.3633 -1.0208 -0.1184 27 1 1.6054 -0.2618 2.1369 28 1 1.7517 -1.7716 1.2053 29 1 3.9995 -1.0728 0.4258 30 1 3.8532 0.4369 1.3573 31 1 7.2197 -0.8013 2.1916 32 1 1.3213 -1.3234 -1.5631 33 1 3.2672 -1.2478 -3.5157 34 1 4.4351 -0.5444 -2.3714 35 1 4.3741 1.5949 -3.6231 36 1 4.8637 0.2495 -4.6810 37 1 2.0869 -1.0256 -4.9494 38 1 1.5672 -0.0944 -6.3748 39 1 3.2246 -0.7368 -6.2875 40 1 2.0472 2.4965 -3.7451 41 1 0.8791 1.7933 -4.8897 42 1 0.4501 0.9987 -2.5803 43 1 0.9401 -0.3467 -3.6377 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:54 Heat of formation + Delta-G solvation = -60.045287 kcal Electronic energy + Delta-G solvation = -17971.327843 eV Core-core repulsion = 15434.761831 eV Total energy + Delta-G solvation = -2536.566012 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.41938 -37.86136 -35.27461 -33.47628 -31.71920 -31.16577 -29.35841 -27.06269 -26.73031 -23.45591 -23.23223 -22.39225 -21.44648 -19.36000 -18.34792 -17.05019 -16.51061 -16.40103 -15.71464 -15.51243 -14.86734 -14.61809 -14.47255 -14.18962 -13.91028 -13.61824 -13.40554 -13.22165 -12.93698 -12.89827 -12.81875 -12.65377 -12.56523 -12.31929 -12.05705 -11.91407 -11.66004 -11.52143 -11.23048 -11.14243 -11.05226 -10.96872 -10.74514 -10.48003 -9.02839 -8.13444 -6.24317 1.39002 1.42905 1.50519 2.43725 3.18357 3.28771 3.80883 3.85374 4.04261 4.09394 4.25900 4.30293 4.42550 4.44963 4.48980 4.57616 4.64715 4.74001 4.80864 4.82599 4.87127 5.01000 5.03511 5.08492 5.10982 5.15520 5.17430 5.22802 5.28190 5.31262 5.39699 5.45203 5.48606 5.57476 5.59376 5.66496 5.90142 6.03298 6.34873 6.38955 6.76658 6.95396 7.43747 8.97698 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.028972 B = 0.005422 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.222713 B = 5162.842367 C = 5869.700996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 H 0.049 0.951 4 C -0.089 4.089 5 C 0.041 3.959 6 C -0.544 4.544 7 H 0.055 0.945 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.267 1.267 14 N -0.689 5.689 15 C 0.096 3.904 16 H 0.047 0.953 17 C -0.104 4.104 18 C -0.112 4.112 19 C -0.087 4.087 20 H 0.078 0.922 21 C -0.148 4.148 22 C -0.109 4.109 23 C -0.136 4.136 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.002 0.998 30 H -0.028 1.028 31 H 0.261 0.739 32 H 0.344 0.656 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.550 3.268 -14.558 18.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 H 0.067 0.933 4 C -0.127 4.127 5 C 0.004 3.996 6 C -0.582 4.582 7 H 0.073 0.927 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.192 1.192 14 N -0.319 5.319 15 C -0.014 4.014 16 H 0.065 0.935 17 C -0.142 4.142 18 C -0.150 4.150 19 C -0.106 4.106 20 H 0.096 0.904 21 C -0.205 4.205 22 C -0.147 4.147 23 C -0.175 4.175 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.021 0.979 30 H -0.010 1.010 31 H 0.069 0.931 32 H 0.163 0.837 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.739 3.201 -14.313 18.178 hybrid contribution 0.123 0.009 0.724 0.734 sum -10.616 3.209 -13.589 17.540 Atomic orbital electron populations 1.22389 0.94701 1.02526 1.02550 1.21570 0.93827 0.95885 0.90503 0.93250 1.21497 0.96408 0.99146 0.95629 1.18795 0.92382 0.93448 0.95009 1.21791 0.92552 1.34452 1.09412 0.92688 1.25970 0.97345 0.96483 1.00056 1.70124 1.02541 1.45678 1.39079 0.85558 0.77010 0.79266 0.79531 1.19242 1.20817 1.19190 1.60396 1.45283 1.20154 1.06084 1.21581 0.95118 0.93515 0.91189 0.93471 1.21469 0.97216 0.99052 0.96494 1.21554 0.98210 0.98604 0.96636 1.21083 0.94691 0.97977 0.96807 0.90392 1.21911 1.01280 0.97081 1.00220 1.21517 0.98301 0.97713 0.97143 1.22268 0.97358 1.00537 0.97363 0.91929 0.91542 0.91651 0.93601 0.93504 0.97936 1.01008 0.93051 0.83678 0.91293 0.95189 0.93111 0.91683 0.92607 0.91786 0.92771 0.92697 0.90473 0.91891 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 9.17 71.98 0.66 -3.47 16 2 C 0.09 3.17 2.72 44.92 0.12 3.29 16 3 H 0.05 1.84 7.10 -2.39 -0.02 1.82 16 4 C -0.09 -3.85 4.83 30.60 0.15 -3.70 16 5 C 0.04 2.30 4.86 29.85 0.15 2.44 16 6 C -0.54 -32.80 9.11 25.60 0.23 -32.57 16 7 H 0.05 3.18 7.74 -2.91 -0.02 3.15 16 8 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 9 N -0.93 -59.65 13.29 21.45 0.28 -59.37 16 10 Si 0.96 46.19 29.54 68.60 2.03 48.22 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 14 N -0.69 -22.78 5.58 -469.48 -2.62 -25.40 16 15 C 0.10 2.83 2.50 44.91 0.11 2.95 16 16 H 0.05 1.62 7.18 -2.39 -0.02 1.60 16 17 C -0.10 -3.15 5.25 30.59 0.16 -2.99 16 18 C -0.11 -2.76 5.45 30.60 0.17 -2.59 16 19 C -0.09 -1.66 3.20 -10.79 -0.03 -1.70 16 20 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 21 C -0.15 -2.54 8.50 71.98 0.61 -1.93 16 22 C -0.11 -2.05 5.45 30.61 0.17 -1.88 16 23 C -0.14 -2.92 4.92 30.61 0.15 -2.77 16 24 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.07 1.42 6.53 -2.38 -0.02 1.41 16 26 H 0.06 1.53 8.00 -2.39 -0.02 1.51 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.00 0.14 7.75 -2.39 -0.02 0.12 16 30 H -0.03 -1.76 8.14 -2.39 -0.02 -1.78 16 31 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 32 H 0.34 9.70 7.78 -89.69 -0.70 9.01 16 33 H 0.07 1.93 6.43 -2.39 -0.02 1.92 16 34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.06 1.05 4.81 -2.39 -0.01 1.04 16 38 H 0.06 0.91 8.14 -2.38 -0.02 0.90 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.30 6.53 -2.39 -0.02 1.28 16 43 H 0.08 1.48 6.41 -2.39 -0.02 1.47 16 Total: -1.00 -67.68 323.43 3.05 -64.63 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.25 Total: 16.47 kcal Atomic # 6 Polarization: -47.65 SS G_CDS: 3.11 Total: -44.54 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -2.34 Total: -84.77 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -67.68 3.05 -64.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.585 kcal (2) G-P(sol) polarization free energy of solvation -67.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds